Wall clock time and date at job start Tue Mar 31 2020 19:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47186 * 272.90975 * 3 2 1 5 5 H 1.48497 * 109.47472 * 32.91401 * 3 2 1 6 6 H 1.48509 * 109.46834 * 152.91145 * 3 2 1 7 7 C 1.38816 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00295 * 339.36051 * 7 2 1 9 9 N 1.36940 * 119.99539 * 159.36234 * 7 2 1 10 10 C 1.46926 * 120.63032 * 332.62210 * 9 7 2 11 11 C 1.53185 * 108.77623 * 233.58886 * 10 9 7 12 12 C 1.53042 * 109.31429 * 305.36957 * 11 10 9 13 13 O 1.45199 * 109.46558 * 181.38607 * 12 11 10 14 14 C 1.34227 * 117.00633 * 149.96941 * 13 12 11 15 15 O 1.20828 * 119.99361 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00300 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47384 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47272 * 179.97438 * 17 16 14 19 19 H 1.08999 * 115.56223 * 330.68703 * 18 17 16 20 20 C 1.52998 * 117.49784 * 116.37621 * 18 17 16 21 21 C 1.52997 * 60.00036 * 107.49005 * 20 18 17 22 22 Cl 1.80295 * 117.50083 * 107.49237 * 21 20 18 23 23 Cl 1.80298 * 117.49531 * 252.51038 * 21 20 18 24 24 C 1.53041 * 109.52712 * 61.37081 * 12 11 10 25 25 C 1.46924 * 120.62771 * 152.60542 * 9 7 2 26 26 H 0.96996 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.57762 * 113.80093 * 10 9 7 28 28 H 1.08993 * 109.58994 * 353.37905 * 10 9 7 29 29 H 1.09003 * 109.50002 * 185.41934 * 11 10 9 30 30 H 1.09003 * 109.52805 * 65.33287 * 11 10 9 31 31 H 1.09005 * 109.45767 * 301.35906 * 12 11 10 32 32 H 1.08998 * 109.47567 * 59.99653 * 16 14 13 33 33 H 1.09009 * 109.46840 * 300.00086 * 16 14 13 34 34 H 1.08998 * 109.47353 * 59.99153 * 17 16 14 35 35 H 1.09003 * 109.46471 * 299.99691 * 17 16 14 36 36 H 1.09002 * 117.50324 * 359.97438 * 20 18 17 37 37 H 1.09010 * 117.49808 * 214.98010 * 20 18 17 38 38 H 1.08991 * 109.50039 * 58.58231 * 24 12 11 39 39 H 1.09006 * 109.49746 * 178.68065 * 24 12 11 40 40 H 1.09000 * 109.58619 * 246.20028 * 25 9 7 41 41 H 1.08998 * 109.58815 * 6.62540 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4361 2.0820 -1.3983 5 1 1.4798 2.6341 0.7607 6 1 3.5772 1.4231 0.6376 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3287 9 7 3.3137 -1.2400 -0.4186 10 6 3.8176 -0.2582 -1.3885 11 6 4.4628 -1.0073 -2.5586 12 6 5.5294 -1.9640 -2.0207 13 8 6.1659 -2.6519 -3.1297 14 6 7.4468 -3.0181 -2.9654 15 8 8.0171 -2.7722 -1.9290 16 6 8.1734 -3.7357 -4.0735 17 6 9.6070 -4.0368 -3.6321 18 6 10.3445 -4.7660 -4.7569 19 1 9.7212 -5.3784 -5.4084 20 6 11.5455 -4.0591 -5.3885 21 6 11.7629 -5.2609 -4.4669 22 17 12.2754 -6.8125 -5.2290 23 17 12.4374 -4.9402 -2.8259 24 6 4.8752 -2.9897 -1.0923 25 6 4.2350 -2.2630 0.0947 26 1 -0.4850 0.8400 0.0004 27 1 4.5599 0.3805 -0.9097 28 1 2.9911 0.3503 -1.7554 29 1 4.9255 -0.2916 -3.2381 30 1 3.7006 -1.5753 -3.0922 31 1 6.2783 -1.3982 -1.4664 32 1 8.1914 -3.1065 -4.9634 33 1 7.6594 -4.6700 -4.2996 34 1 9.5886 -4.6662 -2.7423 35 1 10.1212 -3.1027 -3.4057 36 1 11.8100 -3.0745 -5.0030 37 1 11.7122 -4.2065 -6.4557 38 1 4.1088 -3.5388 -1.6392 39 1 5.6315 -3.6851 -0.7279 40 1 5.0113 -1.7878 0.6944 41 1 3.6839 -2.9774 0.7063 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:44 Heat of formation + Delta-G solvation = -77.817728 kcal Electronic energy + Delta-G solvation = -24039.615286 eV Core-core repulsion = 20199.937592 eV Total energy + Delta-G solvation = -3839.677695 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67115 -39.54729 -39.06521 -37.40564 -37.00114 -36.63782 -34.64730 -33.37138 -32.33501 -32.05668 -27.52689 -26.25844 -24.59959 -23.66070 -23.22210 -21.91641 -21.39743 -21.20703 -18.94321 -18.73895 -17.55157 -17.47100 -17.23198 -16.93903 -16.03016 -15.93609 -15.54410 -15.33323 -15.04915 -14.60438 -14.54315 -14.22264 -14.08030 -13.86816 -13.58897 -13.55769 -13.10281 -12.95019 -12.74253 -12.58636 -12.48845 -12.39540 -12.21271 -12.18938 -12.15217 -12.04124 -11.88520 -11.64478 -11.55477 -11.41719 -11.19518 -11.09706 -10.75548 -10.68940 -9.02749 -8.17982 -5.51747 0.23284 1.19228 1.25050 1.28729 1.41834 1.50178 1.68645 2.24943 2.39912 3.01408 3.12620 3.26233 3.37470 3.56835 3.70113 3.78633 3.97054 4.06771 4.13161 4.19866 4.21573 4.38340 4.43814 4.55073 4.60547 4.68829 4.70889 4.77624 4.86966 4.88266 4.91750 4.96711 4.98761 5.11183 5.23050 5.29058 5.63357 5.83534 6.10667 6.78371 6.86324 7.57191 7.97128 9.01515 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.001966 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.260987 B =14237.437699 C =14274.866354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.310 1.310 6 H -0.264 1.264 7 C -0.252 4.252 8 H 0.054 0.946 9 N -0.620 5.620 10 C 0.122 3.878 11 C -0.120 4.120 12 C 0.104 3.896 13 O -0.354 6.354 14 C 0.452 3.548 15 O -0.542 6.542 16 C -0.101 4.101 17 C -0.082 4.082 18 C -0.103 4.103 19 H 0.155 0.845 20 C -0.124 4.124 21 C -0.020 4.020 22 Cl -0.105 7.105 23 Cl -0.112 7.112 24 C -0.136 4.136 25 C 0.148 3.852 26 H 0.263 0.737 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.641 -9.972 -16.110 32.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.229 4.229 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.239 1.239 6 H -0.188 1.188 7 C -0.381 4.381 8 H 0.072 0.928 9 N -0.345 5.345 10 C -0.003 4.003 11 C -0.159 4.159 12 C 0.049 3.951 13 O -0.271 6.271 14 C 0.298 3.702 15 O -0.432 6.432 16 C -0.138 4.138 17 C -0.119 4.119 18 C -0.122 4.122 19 H 0.172 0.828 20 C -0.162 4.162 21 C -0.071 4.071 22 Cl -0.078 7.078 23 Cl -0.085 7.085 24 C -0.175 4.175 25 C 0.023 3.977 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.749 -9.914 -15.690 32.557 hybrid contribution -0.021 0.655 0.856 1.078 sum 26.728 -9.259 -14.834 31.940 Atomic orbital electron populations 1.69961 1.07357 1.27332 1.55293 1.25915 0.95876 1.00961 1.00120 0.85956 0.78665 0.80216 0.77944 1.19399 1.23853 1.18810 1.18848 0.86490 0.93723 1.39046 0.92809 1.44541 1.07950 1.34472 1.47532 1.21419 0.97080 0.92046 0.89784 1.22030 0.97162 0.98180 0.98495 1.22547 0.93576 0.93071 0.85914 1.86556 1.26949 1.69026 1.44555 1.24607 0.80209 0.76104 0.89330 1.90671 1.68063 1.53424 1.31029 1.21476 0.93910 1.02949 0.95504 1.21036 0.93261 1.00912 0.96716 1.23307 0.88754 1.00313 0.99814 0.82766 1.24267 0.96991 0.94723 1.00190 1.27079 1.03013 0.89868 0.87118 1.98755 1.92373 1.35652 1.81053 1.98767 1.87319 1.94872 1.27555 1.22278 0.99980 0.97975 0.97312 1.21009 0.91977 0.90797 0.93950 0.92825 0.94548 0.91881 0.89083 0.91091 0.90806 0.84451 0.85009 0.91171 0.90645 0.85459 0.83997 0.91400 0.90761 0.94766 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.42 13.97 21.65 0.30 -59.11 16 2 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 3 Si 0.94 45.77 24.34 68.60 1.67 47.44 16 4 H -0.27 -12.01 6.62 99.48 0.66 -11.35 16 5 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 6 H -0.26 -12.34 6.64 99.48 0.66 -11.68 16 7 C -0.25 -14.20 10.04 84.03 0.84 -13.36 16 8 H 0.05 3.31 8.05 -2.91 -0.02 3.29 16 9 N -0.62 -29.08 2.77 -699.12 -1.94 -31.02 16 10 C 0.12 5.04 4.20 86.36 0.36 5.40 16 11 C -0.12 -3.95 5.74 30.67 0.18 -3.78 16 12 C 0.10 3.23 2.42 30.62 0.07 3.30 16 13 O -0.35 -9.24 9.88 -51.38 -0.51 -9.75 16 14 C 0.45 10.19 7.93 71.23 0.56 10.75 16 15 O -0.54 -15.94 15.20 21.96 0.33 -15.61 16 16 C -0.10 -1.10 5.77 29.85 0.17 -0.93 16 17 C -0.08 -0.96 3.87 30.59 0.12 -0.84 16 18 C -0.10 -0.74 5.58 -10.80 -0.06 -0.80 16 19 H 0.15 0.50 8.07 -2.39 -0.02 0.48 16 20 C -0.12 -0.70 9.86 30.59 0.30 -0.39 16 21 C -0.02 -0.22 3.62 30.59 0.11 -0.11 16 22 Cl -0.11 -1.35 29.29 -2.72 -0.08 -1.43 16 23 Cl -0.11 -1.82 28.23 -2.72 -0.08 -1.90 16 24 C -0.14 -4.48 5.72 30.67 0.18 -4.31 16 25 C 0.15 5.78 6.52 86.36 0.56 6.35 16 26 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.04 1.46 7.07 -2.39 -0.02 1.44 16 28 H 0.06 2.84 4.49 -2.39 -0.01 2.83 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.43 7.16 -2.38 -0.02 2.41 16 32 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.07 1.13 7.98 -2.39 -0.02 1.11 16 35 H 0.07 1.03 7.83 -2.39 -0.02 1.02 16 36 H 0.13 0.64 8.03 -2.39 -0.02 0.62 16 37 H 0.14 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 Total: -1.00 -70.66 360.60 4.49 -66.17 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.94 Total: 5.43 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 3.85 Total: -0.22 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -1.63 Total: -90.13 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.17 Total: -25.36 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.67 Total: 47.44 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -0.16 Total: -3.33 kcal Total: -70.66 4.49 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.646 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds