Wall clock time and date at job start Tue Mar 31 2020 19:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48499 * 109.46920 * 269.99995 * 3 2 1 5 5 H 1.48493 * 109.47467 * 30.00162 * 3 2 1 6 6 H 1.48501 * 109.47094 * 150.00423 * 3 2 1 7 7 C 1.38807 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 197.36337 * 7 2 1 9 9 N 1.36937 * 120.00218 * 17.37331 * 7 2 1 10 10 C 1.46925 * 120.63170 * 207.68188 * 9 7 2 11 11 C 1.53191 * 108.77591 * 233.58428 * 10 9 7 12 12 C 1.53035 * 109.31367 * 305.36325 * 11 10 9 13 13 O 1.45196 * 109.46349 * 181.38607 * 12 11 10 14 14 C 1.34231 * 117.00147 * 149.99575 * 13 12 11 15 15 O 1.20825 * 119.99939 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00115 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47427 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47194 * 180.02562 * 17 16 14 19 19 H 1.08996 * 115.56344 * 29.30588 * 18 17 16 20 20 C 1.53008 * 117.49477 * 243.61811 * 18 17 16 21 21 C 1.53002 * 59.99886 * 252.51135 * 20 18 17 22 22 Cl 1.80301 * 117.49885 * 107.49137 * 21 20 18 23 23 Cl 1.80302 * 117.49783 * 252.51266 * 21 20 18 24 24 C 1.53041 * 109.53962 * 61.36235 * 12 11 10 25 25 C 1.46930 * 120.63274 * 27.65573 * 9 7 2 26 26 H 0.97004 * 119.99882 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.59048 * 113.79530 * 10 9 7 28 28 H 1.09008 * 109.70239 * 353.43731 * 10 9 7 29 29 H 1.09004 * 109.49629 * 185.40932 * 11 10 9 30 30 H 1.09004 * 109.49924 * 65.31466 * 11 10 9 31 31 H 1.09007 * 109.45908 * 301.35802 * 12 11 10 32 32 H 1.08996 * 109.47108 * 60.00160 * 16 14 13 33 33 H 1.09001 * 109.47051 * 300.00618 * 16 14 13 34 34 H 1.08996 * 109.47310 * 59.99715 * 17 16 14 35 35 H 1.09001 * 109.46522 * 300.00020 * 17 16 14 36 36 H 1.08998 * 117.49500 * 145.02289 * 20 18 17 37 37 H 1.09004 * 117.51651 * 359.97438 * 20 18 17 38 38 H 1.08996 * 109.49416 * 58.58591 * 24 12 11 39 39 H 1.08996 * 109.49715 * 178.68605 * 24 12 11 40 40 H 1.09001 * 109.58632 * 246.20937 * 25 9 7 41 41 H 1.09005 * 109.58384 * 6.62695 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3611 -0.3530 10 6 1.8193 -3.6546 0.1816 11 6 2.0742 -4.6102 -0.9883 12 6 0.8185 -4.6902 -1.8593 13 8 1.0454 -5.6203 -2.9509 14 6 -0.0243 -6.2814 -3.4206 15 8 -1.1142 -6.0889 -2.9359 16 6 0.1342 -7.2637 -4.5524 17 6 -1.2272 -7.8732 -4.8932 18 6 -1.0661 -8.8709 -6.0418 19 1 -0.0970 -9.3661 -6.1023 20 6 -1.7817 -8.5556 -7.3570 21 6 -2.2988 -9.6778 -6.4546 22 17 -3.8299 -9.3802 -5.5502 23 17 -2.0371 -11.3751 -7.0039 24 6 0.5005 -3.3052 -2.4274 25 6 0.2278 -2.3348 -1.2739 26 1 -0.4850 0.8401 0.0004 27 1 1.0469 -4.0686 0.8299 28 1 2.7395 -3.5192 0.7500 29 1 2.3135 -5.6014 -0.6029 30 1 2.9080 -4.2404 -1.5851 31 1 -0.0207 -5.0363 -1.2558 32 1 0.8221 -8.0546 -4.2534 33 1 0.5308 -6.7489 -5.4275 34 1 -1.9148 -7.0821 -5.1923 35 1 -1.6240 -8.3879 -4.0182 36 1 -1.2833 -8.8434 -8.2826 37 1 -2.3676 -7.6376 -7.4040 38 1 1.3491 -2.9476 -3.0106 39 1 -0.3803 -3.3675 -3.0664 40 1 -0.6744 -2.6410 -0.7443 41 1 0.0985 -1.3265 -1.6673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850896803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:49 Heat of formation + Delta-G solvation = -66.855648 kcal Electronic energy + Delta-G solvation = -23988.273996 eV Core-core repulsion = 20149.071653 eV Total energy + Delta-G solvation = -3839.202343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43076 -38.75497 -37.53547 -36.43704 -36.14655 -35.77324 -32.89520 -32.45082 -30.30169 -29.72193 -26.26523 -24.87657 -22.81743 -22.33641 -22.16133 -21.13082 -20.37488 -19.33050 -17.53832 -17.05325 -16.82392 -16.34639 -16.03835 -15.26557 -14.83469 -14.51645 -14.02969 -13.66608 -13.58480 -13.28479 -13.19258 -12.88856 -12.74276 -12.70330 -12.38239 -12.32570 -11.86069 -11.61871 -11.56203 -11.54321 -11.26416 -11.25740 -11.17216 -10.77395 -10.70933 -10.64053 -10.36636 -10.35035 -10.22006 -10.14081 -9.92655 -9.68542 -9.42956 -8.50713 -6.75945 -5.83125 -3.26075 0.76203 1.74975 2.35510 2.64667 2.88459 3.36321 3.43089 3.44402 3.65657 3.82801 4.40697 4.46203 4.50306 4.75907 4.89642 4.95349 5.06036 5.22154 5.24572 5.31756 5.35693 5.41197 5.51791 5.60421 5.71468 5.84514 5.99804 6.18476 6.27277 6.44112 6.49288 6.56658 6.67126 6.85381 6.93826 7.28763 7.58979 7.75978 7.95513 8.39699 9.15624 9.78640 10.34845 11.25798 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.001936 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.289294 B =14462.637380 C =14741.301196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.128 4.128 12 C 0.098 3.902 13 O -0.359 6.359 14 C 0.455 3.545 15 O -0.508 6.508 16 C -0.111 4.111 17 C -0.086 4.086 18 C -0.113 4.113 19 H 0.133 0.867 20 C -0.142 4.142 21 C -0.003 4.003 22 Cl -0.086 7.086 23 Cl -0.098 7.098 24 C -0.153 4.153 25 C 0.174 3.826 26 H 0.255 0.745 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 -20.703 -15.566 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.167 4.167 12 C 0.044 3.956 13 O -0.276 6.276 14 C 0.298 3.702 15 O -0.396 6.396 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.132 4.132 19 H 0.151 0.849 20 C -0.179 4.179 21 C -0.055 4.055 22 Cl -0.059 7.059 23 Cl -0.071 7.071 24 C -0.192 4.192 25 C 0.048 3.952 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.324 -20.566 -15.322 25.751 hybrid contribution 0.117 0.663 0.005 0.673 sum -2.206 -19.903 -15.318 25.212 Atomic orbital electron populations 1.70036 1.05294 1.25667 1.53621 1.25074 0.95320 0.98559 1.00728 0.86253 0.79093 0.83485 0.77716 1.21393 1.21742 1.20373 1.19199 0.92804 0.84728 1.41720 0.91429 1.44131 1.35800 1.01545 1.50050 1.20888 0.98297 0.86561 0.92168 1.22227 0.96365 1.00038 0.98077 1.22929 0.99606 0.87596 0.85455 1.86520 1.37877 1.52790 1.50428 1.23476 0.82985 0.80158 0.83578 1.90681 1.27323 1.63619 1.57975 1.21306 0.99529 0.97658 0.96386 1.21131 0.96579 0.97464 0.97140 1.23304 0.95203 0.98175 0.96502 0.84927 1.24114 1.00865 0.97228 0.95722 1.26823 0.89861 0.84085 1.04694 1.98772 1.35667 1.95053 1.76407 1.98754 1.95948 1.22466 1.89934 1.22654 1.00815 0.94651 1.01103 1.20776 0.88790 0.98174 0.87453 0.93505 0.96114 0.91789 0.92303 0.91149 0.90361 0.87611 0.87502 0.89643 0.89278 0.86039 0.85882 0.91732 0.92835 0.95974 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.80 3.00 -172.32 -0.52 -15.31 16 10 C 0.15 3.05 6.51 -3.71 -0.02 3.03 16 11 C -0.13 -2.24 5.74 -26.61 -0.15 -2.39 16 12 C 0.10 1.78 2.41 -26.69 -0.06 1.71 16 13 O -0.36 -5.65 9.88 -39.26 -0.39 -6.04 16 14 C 0.46 6.34 7.93 36.00 0.29 6.62 16 15 O -0.51 -8.72 15.20 -18.75 -0.29 -9.01 16 16 C -0.11 -0.92 5.77 -27.88 -0.16 -1.08 16 17 C -0.09 -0.69 3.87 -26.73 -0.10 -0.79 16 18 C -0.11 -0.66 5.58 -90.62 -0.51 -1.17 16 19 H 0.13 0.57 8.07 -51.93 -0.42 0.15 16 20 C -0.14 -0.72 9.86 -26.73 -0.26 -0.99 16 21 C 0.00 -0.02 3.62 -26.73 -0.10 -0.12 16 22 Cl -0.09 -0.79 28.23 -51.86 -1.46 -2.25 16 23 Cl -0.10 -0.75 29.29 -51.86 -1.52 -2.27 16 24 C -0.15 -3.06 5.72 -26.61 -0.15 -3.22 16 25 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.26 7.94 -51.92 -0.41 0.85 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.08 1.52 7.16 -51.92 -0.37 1.15 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.77 7.83 -51.93 -0.41 0.36 16 35 H 0.09 0.85 7.98 -51.93 -0.41 0.43 16 36 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.12 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.52 6.04 -51.93 -0.31 2.21 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -31.11 367.03 -10.65 -41.75 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.11 Total: -2.09 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.49 Total: -1.29 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.10 Total: -40.82 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.67 Total: -15.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -2.98 Total: -4.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.11 -10.65 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.101 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds