Wall clock time and date at job start Tue Mar 31 2020 19:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48499 * 109.46920 * 269.99995 * 3 2 1 5 5 H 1.48493 * 109.47467 * 30.00162 * 3 2 1 6 6 H 1.48501 * 109.47094 * 150.00423 * 3 2 1 7 7 C 1.38807 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 197.36337 * 7 2 1 9 9 N 1.36937 * 120.00218 * 17.37331 * 7 2 1 10 10 C 1.46925 * 120.63170 * 207.68188 * 9 7 2 11 11 C 1.53191 * 108.77591 * 233.58428 * 10 9 7 12 12 C 1.53035 * 109.31367 * 305.36325 * 11 10 9 13 13 O 1.45196 * 109.46349 * 181.38607 * 12 11 10 14 14 C 1.34231 * 117.00147 * 149.99575 * 13 12 11 15 15 O 1.20825 * 119.99939 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00115 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47427 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47194 * 180.02562 * 17 16 14 19 19 H 1.08996 * 115.56344 * 29.30588 * 18 17 16 20 20 C 1.53008 * 117.49477 * 243.61811 * 18 17 16 21 21 C 1.53002 * 59.99886 * 252.51135 * 20 18 17 22 22 Cl 1.80301 * 117.49885 * 107.49137 * 21 20 18 23 23 Cl 1.80302 * 117.49783 * 252.51266 * 21 20 18 24 24 C 1.53041 * 109.53962 * 61.36235 * 12 11 10 25 25 C 1.46930 * 120.63274 * 27.65573 * 9 7 2 26 26 H 0.97004 * 119.99882 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.59048 * 113.79530 * 10 9 7 28 28 H 1.09008 * 109.70239 * 353.43731 * 10 9 7 29 29 H 1.09004 * 109.49629 * 185.40932 * 11 10 9 30 30 H 1.09004 * 109.49924 * 65.31466 * 11 10 9 31 31 H 1.09007 * 109.45908 * 301.35802 * 12 11 10 32 32 H 1.08996 * 109.47108 * 60.00160 * 16 14 13 33 33 H 1.09001 * 109.47051 * 300.00618 * 16 14 13 34 34 H 1.08996 * 109.47310 * 59.99715 * 17 16 14 35 35 H 1.09001 * 109.46522 * 300.00020 * 17 16 14 36 36 H 1.08998 * 117.49500 * 145.02289 * 20 18 17 37 37 H 1.09004 * 117.51651 * 359.97438 * 20 18 17 38 38 H 1.08996 * 109.49416 * 58.58591 * 24 12 11 39 39 H 1.08996 * 109.49715 * 178.68605 * 24 12 11 40 40 H 1.09001 * 109.58632 * 246.20937 * 25 9 7 41 41 H 1.09005 * 109.58384 * 6.62695 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3611 -0.3530 10 6 1.8193 -3.6546 0.1816 11 6 2.0742 -4.6102 -0.9883 12 6 0.8185 -4.6902 -1.8593 13 8 1.0454 -5.6203 -2.9509 14 6 -0.0243 -6.2814 -3.4206 15 8 -1.1142 -6.0889 -2.9359 16 6 0.1342 -7.2637 -4.5524 17 6 -1.2272 -7.8732 -4.8932 18 6 -1.0661 -8.8709 -6.0418 19 1 -0.0970 -9.3661 -6.1023 20 6 -1.7817 -8.5556 -7.3570 21 6 -2.2988 -9.6778 -6.4546 22 17 -3.8299 -9.3802 -5.5502 23 17 -2.0371 -11.3751 -7.0039 24 6 0.5005 -3.3052 -2.4274 25 6 0.2278 -2.3348 -1.2739 26 1 -0.4850 0.8401 0.0004 27 1 1.0469 -4.0686 0.8299 28 1 2.7395 -3.5192 0.7500 29 1 2.3135 -5.6014 -0.6029 30 1 2.9080 -4.2404 -1.5851 31 1 -0.0207 -5.0363 -1.2558 32 1 0.8221 -8.0546 -4.2534 33 1 0.5308 -6.7489 -5.4275 34 1 -1.9148 -7.0821 -5.1923 35 1 -1.6240 -8.3879 -4.0182 36 1 -1.2833 -8.8434 -8.2826 37 1 -2.3676 -7.6376 -7.4040 38 1 1.3491 -2.9476 -3.0106 39 1 -0.3803 -3.3675 -3.0664 40 1 -0.6744 -2.6410 -0.7443 41 1 0.0985 -1.3265 -1.6673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:48 Heat of formation + Delta-G solvation = -82.166408 kcal Electronic energy + Delta-G solvation = -23988.937920 eV Core-core repulsion = 20149.071653 eV Total energy + Delta-G solvation = -3839.866267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64128 -39.44818 -38.95419 -37.32869 -37.00311 -36.63997 -34.61501 -33.34110 -32.04226 -31.50294 -27.52357 -26.35070 -23.99993 -23.85294 -23.22116 -21.84287 -21.37373 -21.01374 -18.88234 -18.66678 -17.50946 -17.46060 -17.11540 -16.78428 -16.01946 -15.59095 -15.44870 -15.37978 -14.93519 -14.47438 -14.37027 -14.28543 -13.96166 -13.62215 -13.27875 -13.11260 -13.05717 -12.96071 -12.77471 -12.63179 -12.46791 -12.34857 -12.20037 -12.15631 -12.11664 -11.94229 -11.88721 -11.84914 -11.58755 -11.36456 -11.18817 -11.05115 -10.70466 -10.56614 -8.77783 -7.90829 -5.37016 0.22643 1.19081 1.26038 1.47737 1.49185 1.58340 1.71521 2.24712 2.50141 3.12791 3.25210 3.36929 3.52372 3.62899 3.80382 3.88639 3.96791 4.11422 4.17441 4.21442 4.38335 4.44131 4.56535 4.60846 4.70712 4.72780 4.87140 4.88295 4.92740 4.96168 4.98560 5.06670 5.23641 5.25116 5.37840 5.55832 5.63998 5.68827 6.35072 6.79512 7.09453 7.79216 8.31895 9.16787 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.001936 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.289294 B =14462.637380 C =14741.301196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.263 4.263 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.114 4.114 12 C 0.105 3.895 13 O -0.353 6.353 14 C 0.449 3.551 15 O -0.546 6.546 16 C -0.099 4.099 17 C -0.083 4.083 18 C -0.101 4.101 19 H 0.158 0.842 20 C -0.126 4.126 21 C -0.019 4.019 22 Cl -0.113 7.113 23 Cl -0.103 7.103 24 C -0.138 4.138 25 C 0.182 3.818 26 H 0.250 0.750 27 H 0.015 0.985 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.055 0.945 40 H -0.006 1.006 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -22.100 -17.226 28.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.393 4.393 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.153 4.153 12 C 0.050 3.950 13 O -0.270 6.270 14 C 0.295 3.705 15 O -0.436 6.436 16 C -0.136 4.136 17 C -0.121 4.121 18 C -0.120 4.120 19 H 0.175 0.825 20 C -0.163 4.163 21 C -0.070 4.070 22 Cl -0.086 7.086 23 Cl -0.076 7.076 24 C -0.178 4.178 25 C 0.056 3.944 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.012 0.988 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.046 -22.005 -16.993 27.802 hybrid contribution -0.646 1.016 0.522 1.312 sum -0.601 -20.989 -16.470 26.687 Atomic orbital electron populations 1.70202 1.06865 1.26003 1.55340 1.25885 0.96060 1.01847 1.01126 0.85204 0.78128 0.79148 0.77597 1.21123 1.22389 1.18937 1.19573 0.93234 0.85732 1.40722 0.90770 1.44391 1.35696 1.02651 1.50708 1.21067 0.98328 0.85371 0.93603 1.22027 0.95829 1.00764 0.96653 1.22568 0.99408 0.86887 0.86106 1.86534 1.38594 1.52363 1.49513 1.24698 0.81887 0.79971 0.83983 1.90683 1.28703 1.64847 1.59398 1.21475 1.00253 0.97025 0.94858 1.21040 0.96249 0.97435 0.97336 1.23304 0.95641 0.97140 0.95929 0.82472 1.24269 0.99792 0.96174 0.96102 1.27075 0.89353 0.84364 1.06205 1.98769 1.37548 1.95146 1.77153 1.98753 1.95855 1.23110 1.89923 1.22387 1.00958 0.95120 0.99286 1.20488 0.87971 0.97481 0.88445 0.94052 0.96653 0.90781 0.88991 0.90750 0.92071 0.84496 0.84619 0.91045 0.91127 0.83854 0.85714 0.91454 0.92641 0.98801 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.12 11.19 21.65 0.24 -55.87 16 2 C -0.05 -3.02 4.91 84.86 0.42 -2.60 16 3 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.26 -14.31 9.59 84.03 0.81 -13.50 16 8 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 9 N -0.61 -30.83 3.00 -699.09 -2.09 -32.93 16 10 C 0.14 5.76 6.51 86.36 0.56 6.32 16 11 C -0.11 -3.74 5.74 30.67 0.18 -3.57 16 12 C 0.10 3.70 2.41 30.62 0.07 3.78 16 13 O -0.35 -10.26 9.88 -51.43 -0.51 -10.77 16 14 C 0.45 11.66 7.93 71.24 0.56 12.22 16 15 O -0.55 -18.65 15.20 21.97 0.33 -18.31 16 16 C -0.10 -1.30 5.77 29.85 0.17 -1.12 16 17 C -0.08 -1.17 3.87 30.59 0.12 -1.05 16 18 C -0.10 -0.88 5.58 -10.79 -0.06 -0.94 16 19 H 0.16 0.64 8.07 -2.39 -0.02 0.62 16 20 C -0.13 -0.93 9.86 30.60 0.30 -0.63 16 21 C -0.02 -0.24 3.62 30.60 0.11 -0.13 16 22 Cl -0.11 -2.04 28.23 -2.72 -0.08 -2.11 16 23 Cl -0.10 -1.41 29.29 -2.72 -0.08 -1.49 16 24 C -0.14 -5.55 5.72 30.67 0.18 -5.38 16 25 C 0.18 9.14 5.31 86.36 0.46 9.59 16 26 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 2.82 7.94 -2.38 -0.02 2.80 16 29 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.06 2.39 7.16 -2.38 -0.02 2.37 16 32 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.21 7.83 -2.39 -0.02 1.19 16 35 H 0.07 1.28 7.98 -2.39 -0.02 1.26 16 36 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.93 8.03 -2.38 -0.02 0.91 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.06 3.50 6.04 -2.38 -0.01 3.48 16 Total: -1.00 -69.91 367.03 4.75 -65.16 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.03 Total: 6.70 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 3.88 Total: 3.00 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -1.85 Total: -88.80 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.17 Total: -29.08 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -3.44 SS G_CDS: -0.16 Total: -3.60 kcal Total: -69.91 4.75 -65.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.004 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds