Wall clock time and date at job start Tue Mar 31 2020 18:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47069 * 2 1 4 4 N 1.28498 * 124.41059 * 90.02581 * 3 2 1 5 5 C 1.31082 * 109.13415 * 179.97438 * 4 3 2 6 6 C 1.41172 * 105.74726 * 359.97438 * 5 4 3 7 7 C 1.47125 * 127.27151 * 179.97438 * 6 5 4 8 8 O 1.21261 * 120.00303 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99863 * 180.02562 * 7 6 5 10 10 O 1.42904 * 109.46568 * 179.97438 * 9 7 6 11 11 C 1.35007 * 116.99241 * 180.02562 * 10 9 7 12 12 O 1.21683 * 120.00208 * 0.02562 * 11 10 9 13 13 C 1.41749 * 119.99469 * 180.02562 * 11 10 9 14 14 S 1.75840 * 125.45971 * 359.97438 * 13 11 10 15 15 C 1.75649 * 91.49092 * 180.02562 * 14 13 11 16 16 C 1.32874 * 110.86992 * 359.72514 * 15 14 13 17 17 C 1.39677 * 115.27287 * 0.49139 * 16 15 14 18 18 C 1.40514 * 123.35851 * 179.76194 * 17 16 15 19 19 H 1.08003 * 119.99669 * 205.14780 * 18 17 16 20 20 C 1.40342 * 119.99899 * 25.15026 * 18 17 16 21 21 N 1.30609 * 120.00064 * 10.09033 * 20 18 17 22 22 Si 1.86802 * 119.99516 * 190.09428 * 20 18 17 23 23 H 1.48503 * 109.46995 * 265.01311 * 22 20 18 24 24 H 1.48502 * 109.47255 * 25.01370 * 22 20 18 25 25 H 1.48501 * 109.46893 * 145.01366 * 22 20 18 26 26 N 1.28585 * 124.40514 * 270.25060 * 3 2 1 27 27 H 1.09001 * 109.47655 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47217 * 300.00491 * 1 2 3 29 29 H 1.09002 * 109.47126 * 59.99733 * 1 2 3 30 30 H 1.09000 * 109.46814 * 239.99752 * 2 1 3 31 31 H 1.09004 * 109.46518 * 119.99836 * 2 1 3 32 32 H 1.07997 * 127.12251 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46608 * 60.00636 * 9 7 6 34 34 H 1.08996 * 109.47346 * 300.00487 * 9 7 6 35 35 H 1.07997 * 124.56414 * 179.97438 * 15 14 13 36 36 H 1.08001 * 122.36546 * 180.24901 * 16 15 14 37 37 H 0.97006 * 120.00021 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2608 2.0657 1.0601 5 6 2.6827 3.2577 0.7147 6 6 2.6869 3.2686 -0.6969 7 6 3.0795 4.3793 -1.5783 8 8 3.4512 5.4301 -1.1006 9 6 3.0199 4.2111 -3.0747 10 8 3.4465 5.4194 -3.7072 11 6 3.4514 5.4358 -5.0571 12 8 3.1021 4.4498 -5.6789 13 6 3.8635 6.6016 -5.7502 14 16 4.3937 8.1007 -4.9995 15 6 4.6564 8.8467 -6.5679 16 6 4.3631 8.0007 -7.5496 17 6 3.9128 6.7438 -7.1390 18 6 3.5513 5.7224 -8.0337 19 1 2.8547 4.9566 -7.7259 20 6 4.0955 5.6974 -9.3271 21 7 5.0796 6.4983 -9.6371 22 14 3.4122 4.5187 -10.6051 23 1 4.2283 3.2781 -10.6206 24 1 2.0061 4.1821 -10.2664 25 1 3.4593 5.1589 -11.9441 26 7 2.2561 2.0678 -1.0609 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.9687 4.0642 1.3737 33 1 1.9962 3.9863 -3.3745 34 1 3.6743 3.3927 -3.3748 35 1 5.0124 9.8557 -6.7145 36 1 4.4620 8.2674 -8.5915 37 1 5.4559 6.4807 -10.5310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:16 Heat of formation + Delta-G solvation = 13.697300 kcal Electronic energy + Delta-G solvation = -24949.740780 eV Core-core repulsion = 21014.967688 eV Total energy + Delta-G solvation = -3934.773093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.85893 -39.65958 -38.55950 -36.72827 -35.19919 -34.91898 -33.25326 -32.99620 -30.91969 -29.49080 -28.63644 -26.63877 -25.17653 -23.82919 -22.59255 -21.80219 -20.64660 -19.82913 -18.82753 -17.96904 -17.55730 -16.92303 -16.44702 -16.01297 -15.84537 -15.60055 -15.29874 -15.18025 -14.59890 -14.46673 -14.09835 -13.83294 -13.22490 -12.94672 -12.66923 -12.55142 -12.37738 -12.17161 -11.90919 -11.88854 -11.63238 -11.50179 -11.21011 -11.18329 -11.07433 -10.65034 -10.47516 -10.30516 -9.90727 -9.83296 -9.68878 -9.67746 -9.26192 -8.85468 -7.55342 -7.22377 -7.17872 -4.68398 0.90746 1.67287 1.86477 1.92400 2.80206 2.88704 2.92176 3.00572 3.18174 3.24125 3.61162 3.72007 3.73600 3.78144 4.20109 4.34524 4.35113 4.49485 4.63649 4.78136 5.03305 5.13871 5.17506 5.26069 5.45500 5.55798 5.56681 5.62609 5.77119 6.07672 6.27464 6.63681 6.74003 7.02638 7.16715 7.38209 7.46467 7.50874 7.72808 7.91723 8.22035 8.42478 8.54238 9.28586 9.70589 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014532 B = 0.002819 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.301990 B = 9930.653123 C =11692.266208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.139 5.139 4 N -0.293 5.293 5 C 0.034 3.966 6 C -0.070 4.070 7 C 0.447 3.553 8 O -0.414 6.414 9 C 0.041 3.959 10 O -0.354 6.354 11 C 0.534 3.466 12 O -0.548 6.548 13 C -0.411 4.411 14 S -0.005 6.005 15 C -0.200 4.200 16 C -0.111 4.111 17 C 0.143 3.857 18 C -0.362 4.362 19 H 0.114 0.886 20 C 0.064 3.936 21 N -0.764 5.764 22 Si 0.929 3.071 23 H -0.263 1.263 24 H -0.253 1.253 25 H -0.272 1.272 26 N -0.231 5.231 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.209 0.791 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 -9.620 11.660 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 N -0.043 5.043 4 N -0.132 5.132 5 C -0.150 4.150 6 C -0.231 4.231 7 C 0.318 3.682 8 O -0.282 6.282 9 C -0.035 4.035 10 O -0.273 6.273 11 C 0.391 3.609 12 O -0.445 6.445 13 C -0.527 4.527 14 S 0.252 5.748 15 C -0.335 4.335 16 C -0.144 4.144 17 C 0.132 3.868 18 C -0.393 4.393 19 H 0.131 0.869 20 C -0.159 4.159 21 N -0.387 5.387 22 Si 0.751 3.249 23 H -0.188 1.188 24 H -0.176 1.176 25 H -0.197 1.197 26 N -0.080 5.080 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.225 0.775 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.359 -10.030 13.083 17.334 hybrid contribution 0.008 -0.245 -1.975 1.990 sum -5.351 -10.275 11.107 16.050 Atomic orbital electron populations 1.22202 0.92760 1.04155 1.03943 1.22146 0.96348 0.73994 1.06282 1.48389 1.43229 1.13511 0.99202 1.73952 1.17952 1.05671 1.15662 1.24987 1.00938 0.95226 0.93825 1.23560 1.09931 0.94631 0.94932 1.21081 0.73693 0.84070 0.89380 1.90598 1.33068 1.26309 1.78178 1.22310 1.02692 0.89087 0.89451 1.86283 1.80841 1.36394 1.23756 1.18297 0.76817 0.87642 0.78182 1.90718 1.50738 1.36048 1.67004 1.20964 1.39480 0.97468 0.94832 1.83397 1.73491 1.09593 1.08326 1.25306 1.08890 1.02617 0.96704 1.20570 1.00536 0.93157 1.00131 1.16915 0.88006 0.92515 0.89404 1.20220 1.17901 1.07518 0.93632 0.86864 1.26460 0.93500 0.96118 0.99820 1.69669 1.16472 1.30420 1.22176 0.85930 0.81129 0.79885 0.77932 1.18806 1.17630 1.19656 1.74556 1.13758 1.04350 1.15371 0.89331 0.91341 0.91069 0.86840 0.87002 0.77477 0.88561 0.88514 0.84194 0.83822 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.24 37.16 0.38 -0.51 16 2 C 0.13 0.80 7.24 -4.04 -0.03 0.77 16 3 N -0.14 -1.51 3.94 -10.61 -0.04 -1.55 16 4 N -0.29 -3.41 12.00 30.94 0.37 -3.04 16 5 C 0.03 0.40 12.05 -16.76 -0.20 0.20 16 6 C -0.07 -0.98 7.13 -82.79 -0.59 -1.57 16 7 C 0.45 7.38 7.22 -30.70 -0.22 7.16 16 8 O -0.41 -7.80 17.10 -14.34 -0.25 -8.05 16 9 C 0.04 0.75 5.68 36.01 0.20 0.95 16 10 O -0.35 -8.18 9.41 -48.11 -0.45 -8.63 16 11 C 0.53 13.83 7.73 32.07 0.25 14.08 16 12 O -0.55 -14.78 14.11 -19.40 -0.27 -15.05 16 13 C -0.41 -10.88 6.36 -37.70 -0.24 -11.12 16 14 S 0.00 -0.11 23.02 -107.50 -2.47 -2.59 16 15 C -0.20 -4.42 11.11 28.88 0.32 -4.10 16 16 C -0.11 -2.70 8.81 -40.89 -0.36 -3.06 16 17 C 0.14 3.80 5.53 -107.96 -0.60 3.20 16 18 C -0.36 -9.52 8.41 -37.93 -0.32 -9.84 16 19 H 0.11 3.08 6.07 -52.48 -0.32 2.76 16 20 C 0.06 1.51 5.37 -17.28 -0.09 1.42 16 21 N -0.76 -17.86 10.87 55.57 0.60 -17.25 16 22 Si 0.93 17.71 29.57 -169.99 -5.03 12.68 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.25 -4.87 7.11 56.52 0.40 -4.47 16 25 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 26 N -0.23 -3.04 11.98 33.35 0.40 -2.64 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.21 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.10 1.68 8.13 -51.93 -0.42 1.26 16 34 H 0.10 1.71 8.13 -51.93 -0.42 1.29 16 35 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 36 H 0.14 3.41 6.37 -52.49 -0.33 3.07 16 37 H 0.29 6.03 8.29 -40.82 -0.34 5.70 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -32.15 349.98 -6.95 -39.10 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.59 Total: 4.17 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.42 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 1.33 Total: -24.48 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.97 Total: -31.74 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.47 Total: -2.59 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.15 -6.95 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.798 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds