Wall clock time and date at job start Tue Mar 31 2020 18:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00322 * 2 1 4 4 O 1.20820 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47148 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47041 * 179.97438 * 6 5 3 8 8 C 1.36675 * 120.00181 * 263.23849 * 7 6 5 9 9 H 1.08004 * 119.99298 * 28.76712 * 8 7 6 10 10 C 1.39175 * 120.00298 * 208.77205 * 8 7 6 11 11 N 1.31274 * 120.00281 * 18.86359 * 10 8 7 12 12 Si 1.86802 * 119.99888 * 198.86734 * 10 8 7 13 13 H 1.48493 * 109.47341 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47055 * 120.00047 * 12 10 8 15 15 H 1.48504 * 109.47146 * 239.99473 * 12 10 8 16 16 C 1.34775 * 120.00146 * 83.24181 * 7 6 5 17 17 O 1.21575 * 120.00041 * 183.53010 * 16 7 6 18 18 C 1.47989 * 119.99908 * 3.52529 * 16 7 6 19 19 N 1.33069 * 120.62191 * 353.61671 * 18 16 7 20 20 C 1.31768 * 120.88683 * 179.73104 * 19 18 16 21 21 N 1.31193 * 122.65460 * 0.58550 * 20 19 18 22 22 C 1.34585 * 121.12859 * 359.70479 * 21 20 19 23 23 C 1.44799 * 130.25185 * 180.02562 * 22 21 20 24 24 C 1.32209 * 114.90916 * 179.97438 * 23 22 21 25 25 S 1.75377 * 111.43269 * 0.02562 * 24 23 22 26 26 C 1.40435 * 117.97362 * 359.97438 * 22 21 20 27 27 H 1.08999 * 109.46895 * 60.00046 * 1 2 3 28 28 H 1.09001 * 109.47223 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46825 * 300.00442 * 1 2 3 30 30 H 1.08999 * 109.47190 * 59.99486 * 5 3 2 31 31 H 1.09002 * 109.46677 * 300.00101 * 5 3 2 32 32 H 1.09001 * 109.46945 * 59.99452 * 6 5 3 33 33 H 1.09000 * 109.46801 * 299.99697 * 6 5 3 34 34 H 0.96996 * 120.00384 * 184.98643 * 11 10 8 35 35 H 1.07999 * 118.67519 * 180.28856 * 20 19 18 36 36 H 1.08003 * 122.53910 * 359.97438 * 23 22 21 37 37 H 1.08002 * 124.28230 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1383 2.9940 1.1743 9 1 5.7167 2.6281 2.0989 10 6 7.3689 3.6441 1.1797 11 7 7.7146 4.4034 0.1662 12 14 8.5287 3.4361 2.6293 13 1 7.9083 2.5363 3.6345 14 1 9.8079 2.8464 2.1590 15 1 8.7918 4.7608 3.2467 16 6 6.1434 2.7163 -1.1600 17 8 7.3591 2.7154 -1.1533 18 6 5.4104 2.6049 -2.4408 19 7 4.0860 2.4774 -2.4549 20 6 3.4276 2.3831 -3.5924 21 7 4.0259 2.3973 -4.7599 22 6 5.3630 2.5166 -4.8550 23 6 6.2182 2.5547 -6.0229 24 6 7.5085 2.6825 -5.7643 25 16 7.8107 2.7694 -4.0390 26 6 6.1009 2.6263 -3.6652 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9558 0.7808 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 3.6108 3.2364 0.8889 33 1 3.6102 3.2359 -0.8911 34 1 8.6001 4.7982 0.1358 35 1 2.3524 2.2855 -3.5624 36 1 5.8314 2.4842 -7.0288 37 1 8.2788 2.7275 -6.5199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871348077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:01 Heat of formation + Delta-G solvation = -1.323900 kcal Electronic energy + Delta-G solvation = -26904.720204 eV Core-core repulsion = 22969.295743 eV Total energy + Delta-G solvation = -3935.424461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62149 -40.10400 -38.30405 -36.31688 -35.72265 -34.59559 -33.11013 -31.99992 -30.38482 -30.03261 -27.54931 -25.92413 -24.55564 -24.23460 -23.14172 -21.38376 -20.51766 -19.87787 -17.80624 -17.50785 -17.42224 -16.40778 -16.36901 -16.31081 -15.67378 -15.15684 -14.87397 -14.73137 -14.38546 -13.85880 -13.74895 -13.58278 -13.52685 -13.03546 -12.46282 -12.40961 -12.38078 -12.07452 -11.94601 -11.56614 -11.48890 -11.07522 -10.96517 -10.81916 -10.66099 -10.54240 -10.37378 -10.18209 -10.09882 -9.85509 -9.43152 -8.95110 -8.68299 -8.28890 -7.57085 -7.25705 -6.29053 -4.04893 0.72828 1.16275 1.85846 2.37425 2.42318 2.54143 2.94617 3.20484 3.27028 3.29444 3.91407 4.06441 4.21128 4.45426 4.63072 4.74397 5.01515 5.07583 5.14398 5.19679 5.20757 5.28180 5.44018 5.53649 5.63801 5.68845 5.76189 5.92873 6.08832 6.10656 6.29680 6.49035 6.59437 6.65396 7.05344 7.22632 7.30710 7.83275 8.04763 8.47043 8.64734 8.87350 9.29765 10.06081 10.61031 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.007653 B = 0.006886 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.955652 B = 4065.439665 C = 7378.924652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.472 3.528 4 O -0.507 6.507 5 C -0.113 4.113 6 C 0.108 3.892 7 N -0.406 5.406 8 C -0.292 4.292 9 H 0.098 0.902 10 C 0.031 3.969 11 N -0.755 5.755 12 Si 0.921 3.079 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.284 1.284 16 C 0.440 3.560 17 O -0.503 6.503 18 C 0.220 3.780 19 N -0.511 5.511 20 C 0.289 3.711 21 N -0.515 5.515 22 C 0.156 3.844 23 C -0.129 4.129 24 C -0.204 4.204 25 S 0.221 5.779 26 C -0.236 4.236 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.271 0.729 35 H 0.189 0.811 36 H 0.146 0.854 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -5.753 -5.750 10.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.315 3.685 4 O -0.394 6.394 5 C -0.152 4.152 6 C -0.017 4.017 7 N -0.122 5.122 8 C -0.422 4.422 9 H 0.116 0.884 10 C -0.183 4.183 11 N -0.392 5.392 12 Si 0.747 3.253 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.210 1.210 16 C 0.231 3.769 17 O -0.379 6.379 18 C 0.064 3.936 19 N -0.232 5.232 20 C -0.003 4.003 21 N -0.231 5.231 22 C 0.013 3.987 23 C -0.161 4.161 24 C -0.342 4.342 25 S 0.484 5.516 26 C -0.358 4.358 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.206 0.794 36 H 0.164 0.836 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.114 -5.251 -5.018 8.883 hybrid contribution -0.359 -0.080 -0.411 0.551 sum -5.473 -5.331 -5.429 9.373 Atomic orbital electron populations 1.23174 0.77220 1.03116 1.02337 1.86546 1.22824 1.34386 1.84566 1.23937 0.92196 0.80874 0.71535 1.90629 1.67268 1.36201 1.45351 1.21750 0.86125 1.02218 1.05107 1.21921 0.82313 0.92775 1.04674 1.43326 1.03833 1.58767 1.06325 1.19712 1.03119 1.33329 0.86016 0.88432 1.25165 0.99254 0.95710 0.98170 1.70041 1.19936 1.21020 1.28244 0.85963 0.80604 0.77950 0.80787 1.19341 1.20407 1.20977 1.16901 0.86687 0.91868 0.81475 1.90618 1.11909 1.51439 1.83964 1.22041 0.88641 0.89161 0.93714 1.69126 1.07364 1.17253 1.29462 1.24663 1.00705 0.92078 0.82832 1.68139 1.08697 1.16732 1.29572 1.20267 0.90132 0.96958 0.91356 1.20357 0.91491 1.06525 0.97700 1.25919 0.99918 1.04696 1.03655 1.84999 1.00312 1.72589 0.93712 1.24171 1.01154 1.11934 0.98549 0.92078 0.88639 0.92168 0.87942 0.88348 0.91165 0.86736 0.91809 0.79414 0.83607 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.20 10.57 -39.26 -0.41 -5.62 16 3 C 0.47 7.64 7.96 36.01 0.29 7.93 16 4 O -0.51 -9.14 15.73 -18.75 -0.29 -9.44 16 5 C -0.11 -1.94 5.51 -27.88 -0.15 -2.10 16 6 C 0.11 2.17 4.24 -4.04 -0.02 2.16 16 7 N -0.41 -9.71 2.61 -115.85 -0.30 -10.01 16 8 C -0.29 -7.31 9.43 -15.05 -0.14 -7.45 16 9 H 0.10 2.26 7.90 -52.48 -0.41 1.84 16 10 C 0.03 0.79 4.47 -17.44 -0.08 0.71 16 11 N -0.76 -20.64 10.34 55.51 0.57 -20.07 16 12 Si 0.92 19.94 29.60 -169.99 -5.03 14.91 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 C 0.44 11.00 6.91 -12.26 -0.08 10.92 16 17 O -0.50 -13.71 11.65 5.30 0.06 -13.64 16 18 C 0.22 4.85 6.56 -82.45 -0.54 4.31 16 19 N -0.51 -9.97 4.64 -11.13 -0.05 -10.03 16 20 C 0.29 5.04 12.22 -92.69 -1.13 3.90 16 21 N -0.51 -9.38 10.49 -11.76 -0.12 -9.50 16 22 C 0.16 2.89 7.23 -83.24 -0.60 2.29 16 23 C -0.13 -1.92 10.39 -38.92 -0.40 -2.33 16 24 C -0.20 -2.81 11.04 28.81 0.32 -2.50 16 25 S 0.22 4.01 21.61 -107.50 -2.32 1.68 16 26 C -0.24 -4.86 6.35 -37.87 -0.24 -5.10 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.10 1.82 6.86 -51.93 -0.36 1.46 16 31 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.07 1.41 7.94 -51.93 -0.41 1.00 16 33 H 0.12 2.40 5.15 -52.19 -0.27 2.13 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 36 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -31.22 334.30 -8.14 -39.36 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.55 Total: 3.14 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -1.72 Total: 14.18 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.10 Total: -49.61 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.65 Total: -28.70 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -2.32 Total: 1.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.22 -8.14 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.033 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds