Wall clock time and date at job start Tue Mar 31 2020 18:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00322 * 2 1 4 4 O 1.20820 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47148 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47041 * 179.97438 * 6 5 3 8 8 C 1.36675 * 120.00181 * 263.23849 * 7 6 5 9 9 H 1.08004 * 119.99298 * 28.76712 * 8 7 6 10 10 C 1.39175 * 120.00298 * 208.77205 * 8 7 6 11 11 N 1.31274 * 120.00281 * 18.86359 * 10 8 7 12 12 Si 1.86802 * 119.99888 * 198.86734 * 10 8 7 13 13 H 1.48493 * 109.47341 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47055 * 120.00047 * 12 10 8 15 15 H 1.48504 * 109.47146 * 239.99473 * 12 10 8 16 16 C 1.34775 * 120.00146 * 83.24181 * 7 6 5 17 17 O 1.21575 * 120.00041 * 183.53010 * 16 7 6 18 18 C 1.47989 * 119.99908 * 3.52529 * 16 7 6 19 19 N 1.33069 * 120.62191 * 353.61671 * 18 16 7 20 20 C 1.31768 * 120.88683 * 179.73104 * 19 18 16 21 21 N 1.31193 * 122.65460 * 0.58550 * 20 19 18 22 22 C 1.34585 * 121.12859 * 359.70479 * 21 20 19 23 23 C 1.44799 * 130.25185 * 180.02562 * 22 21 20 24 24 C 1.32209 * 114.90916 * 179.97438 * 23 22 21 25 25 S 1.75377 * 111.43269 * 0.02562 * 24 23 22 26 26 C 1.40435 * 117.97362 * 359.97438 * 22 21 20 27 27 H 1.08999 * 109.46895 * 60.00046 * 1 2 3 28 28 H 1.09001 * 109.47223 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46825 * 300.00442 * 1 2 3 30 30 H 1.08999 * 109.47190 * 59.99486 * 5 3 2 31 31 H 1.09002 * 109.46677 * 300.00101 * 5 3 2 32 32 H 1.09001 * 109.46945 * 59.99452 * 6 5 3 33 33 H 1.09000 * 109.46801 * 299.99697 * 6 5 3 34 34 H 0.96996 * 120.00384 * 184.98643 * 11 10 8 35 35 H 1.07999 * 118.67519 * 180.28856 * 20 19 18 36 36 H 1.08003 * 122.53910 * 359.97438 * 23 22 21 37 37 H 1.08002 * 124.28230 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1383 2.9940 1.1743 9 1 5.7167 2.6281 2.0989 10 6 7.3689 3.6441 1.1797 11 7 7.7146 4.4034 0.1662 12 14 8.5287 3.4361 2.6293 13 1 7.9083 2.5363 3.6345 14 1 9.8079 2.8464 2.1590 15 1 8.7918 4.7608 3.2467 16 6 6.1434 2.7163 -1.1600 17 8 7.3591 2.7154 -1.1533 18 6 5.4104 2.6049 -2.4408 19 7 4.0860 2.4774 -2.4549 20 6 3.4276 2.3831 -3.5924 21 7 4.0259 2.3973 -4.7599 22 6 5.3630 2.5166 -4.8550 23 6 6.2182 2.5547 -6.0229 24 6 7.5085 2.6825 -5.7643 25 16 7.8107 2.7694 -4.0390 26 6 6.1009 2.6263 -3.6652 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9558 0.7808 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 3.6108 3.2364 0.8889 33 1 3.6102 3.2359 -0.8911 34 1 8.6001 4.7982 0.1358 35 1 2.3524 2.2855 -3.5624 36 1 5.8314 2.4842 -7.0288 37 1 8.2788 2.7275 -6.5199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871348077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:01 Heat of formation + Delta-G solvation = -18.989787 kcal Electronic energy + Delta-G solvation = -26905.486254 eV Core-core repulsion = 22969.295743 eV Total energy + Delta-G solvation = -3936.190511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14393 -41.37834 -40.03117 -37.58397 -37.09520 -36.33940 -34.76519 -33.66308 -31.94781 -31.47117 -28.59300 -27.65478 -26.01535 -25.76359 -24.68698 -22.78325 -21.89344 -21.42694 -19.30900 -19.15123 -18.78680 -17.84691 -17.71663 -17.56810 -17.18208 -16.80329 -16.41097 -16.23721 -15.96372 -15.51438 -15.09017 -14.97486 -14.86527 -14.38996 -14.09418 -13.76556 -13.72563 -13.39264 -13.33048 -13.28948 -12.86289 -12.74829 -12.64133 -12.36270 -12.05743 -11.97594 -11.72497 -11.63438 -11.53712 -11.39553 -11.20104 -10.44102 -10.26286 -10.03312 -9.12373 -9.00037 -8.16785 -5.99440 -0.70987 -0.35865 0.46635 1.09253 1.10368 1.24817 1.45787 1.50603 1.59334 1.77214 2.28788 2.37915 2.73789 2.88463 3.00570 3.17852 3.22204 3.57549 3.77386 3.94104 4.12141 4.15428 4.25483 4.37184 4.40465 4.44321 4.62071 4.64429 4.76666 4.85789 4.95089 5.02830 5.16285 5.33722 5.39878 5.50844 5.77885 5.98333 6.78794 6.80501 6.93896 7.07950 7.47224 8.21159 8.75268 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.007653 B = 0.006886 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.955652 B = 4065.439665 C = 7378.924652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.482 3.518 4 O -0.528 6.528 5 C -0.103 4.103 6 C 0.113 3.887 7 N -0.419 5.419 8 C -0.325 4.325 9 H 0.107 0.893 10 C -0.010 4.010 11 N -0.804 5.804 12 Si 0.982 3.018 13 H -0.253 1.253 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.436 3.564 17 O -0.531 6.531 18 C 0.200 3.800 19 N -0.507 5.507 20 C 0.285 3.715 21 N -0.507 5.507 22 C 0.154 3.846 23 C -0.134 4.134 24 C -0.162 4.162 25 S 0.168 5.832 26 C -0.262 4.262 27 H 0.064 0.936 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.264 0.736 35 H 0.226 0.774 36 H 0.185 0.815 37 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 -7.066 -7.846 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.326 3.674 4 O -0.417 6.417 5 C -0.142 4.142 6 C -0.011 4.011 7 N -0.137 5.137 8 C -0.454 4.454 9 H 0.125 0.875 10 C -0.220 4.220 11 N -0.442 5.442 12 Si 0.806 3.194 13 H -0.176 1.176 14 H -0.217 1.217 15 H -0.206 1.206 16 C 0.225 3.775 17 O -0.410 6.410 18 C 0.044 3.956 19 N -0.227 5.227 20 C -0.006 4.006 21 N -0.223 5.223 22 C 0.009 3.991 23 C -0.164 4.164 24 C -0.299 4.299 25 S 0.431 5.569 26 C -0.383 4.383 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.202 0.798 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.471 -6.582 -7.087 11.637 hybrid contribution -0.125 0.238 -0.080 0.281 sum -6.596 -6.344 -7.166 11.624 Atomic orbital electron populations 1.23551 0.74750 1.05577 1.02673 1.86515 1.25137 1.32833 1.83949 1.23510 0.91554 0.81220 0.71101 1.90624 1.67566 1.37014 1.46493 1.21491 0.87424 1.00000 1.05243 1.21859 0.80522 0.94740 1.03947 1.43451 1.05082 1.59168 1.05956 1.19984 1.04067 1.34499 0.86850 0.87495 1.26001 1.00704 0.95081 1.00193 1.70153 1.19834 1.23332 1.30889 0.85040 0.78025 0.78029 0.78285 1.17646 1.21697 1.20575 1.17421 0.86783 0.90616 0.82639 1.90582 1.13318 1.52047 1.85007 1.21742 0.89769 0.90806 0.93288 1.69087 1.06391 1.16504 1.30713 1.25389 1.02083 0.91080 0.82026 1.68251 1.08595 1.15775 1.29644 1.20983 0.90374 0.95697 0.92039 1.20727 0.91156 1.06453 0.98028 1.26317 1.00742 1.01657 1.01213 1.85184 0.99921 1.73656 0.98161 1.24413 1.02398 1.12775 0.98759 0.91701 0.85167 0.91952 0.88482 0.87573 0.91708 0.87493 0.92562 0.75800 0.79782 0.76240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.76 10.57 -51.43 -0.54 -10.30 16 3 C 0.48 15.19 7.96 71.24 0.57 15.76 16 4 O -0.53 -18.62 15.73 21.98 0.35 -18.28 16 5 C -0.10 -3.54 5.51 29.85 0.16 -3.38 16 6 C 0.11 4.69 4.24 86.38 0.37 5.06 16 7 N -0.42 -20.92 2.61 -638.72 -1.67 -22.59 16 8 C -0.33 -16.93 9.43 84.16 0.79 -16.13 16 9 H 0.11 5.12 7.90 -2.91 -0.02 5.10 16 10 C -0.01 -0.56 4.47 85.00 0.38 -0.18 16 11 N -0.80 -46.40 10.34 21.70 0.22 -46.18 16 12 Si 0.98 42.54 29.60 68.60 2.03 44.57 16 13 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 14 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 16 C 0.44 22.71 6.91 86.83 0.60 23.31 16 17 O -0.53 -30.46 11.65 -3.95 -0.05 -30.51 16 18 C 0.20 8.98 6.56 42.12 0.28 9.26 16 19 N -0.51 -19.67 4.64 -189.13 -0.88 -20.55 16 20 C 0.29 9.43 12.22 181.07 2.21 11.64 16 21 N -0.51 -17.21 10.49 -191.12 -2.00 -19.22 16 22 C 0.15 5.39 7.23 40.93 0.30 5.69 16 23 C -0.13 -3.46 10.39 22.92 0.24 -3.22 16 24 C -0.16 -3.86 11.04 66.79 0.74 -3.12 16 25 S 0.17 6.07 21.61 -56.49 -1.22 4.85 16 26 C -0.26 -10.74 6.35 23.38 0.15 -10.59 16 27 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.10 3.46 6.86 -2.39 -0.02 3.44 16 31 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.06 2.70 7.94 -2.39 -0.02 2.68 16 33 H 0.11 4.58 5.15 -2.91 -0.01 4.57 16 34 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.23 5.58 8.06 -2.91 -0.02 5.55 16 36 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -71.69 334.30 5.35 -66.34 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.13 Total: 16.06 kcal Atomic # 6 Polarization: 27.81 SS G_CDS: 7.98 Total: 35.79 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -4.32 Total: -108.53 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.24 Total: -59.09 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.22 Total: 4.85 kcal Total: -71.69 5.35 -66.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.353 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds