Wall clock time and date at job start Tue Mar 31 2020 18:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37733 * 119.90124 * 179.73976 * 4 3 2 6 6 C 1.38971 * 120.09390 * 0.53731 * 5 4 3 7 7 O 1.35754 * 119.90662 * 179.69492 * 6 5 4 8 8 C 1.42904 * 117.00050 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99906 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00385 * 180.02562 * 9 8 7 12 12 N 1.40102 * 120.00183 * 180.02562 * 11 9 8 13 13 C 1.34770 * 119.99843 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00482 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00090 * 179.97438 * 13 12 11 16 16 S 1.80996 * 109.47477 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00159 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99682 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00134 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00077 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46995 * 60.00231 * 21 19 17 23 23 H 1.48498 * 109.47059 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46971 * 300.00170 * 21 19 17 25 25 C 1.38962 * 120.18650 * 359.71703 * 6 5 4 26 26 C 1.37732 * 120.09997 * 0.02562 * 25 6 5 27 27 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.95573 * 180.25420 * 5 4 3 29 29 H 1.09004 * 109.47351 * 300.00064 * 8 7 6 30 30 H 1.09005 * 109.46933 * 59.99727 * 8 7 6 31 31 H 0.97000 * 119.99907 * 359.97438 * 11 9 8 32 32 H 0.97000 * 119.99910 * 359.97438 * 12 11 9 33 33 H 1.09004 * 109.46888 * 300.00378 * 15 13 12 34 34 H 1.09002 * 109.46743 * 59.99889 * 15 13 12 35 35 H 0.97000 * 120.00422 * 180.02562 * 20 19 17 36 36 H 1.08003 * 119.94957 * 179.97438 * 25 6 5 37 37 H 1.07996 * 120.04713 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1996 1.1883 6 6 5.3389 0.0023 0.0000 7 8 6.6964 0.0038 -0.0002 8 6 7.3451 0.2133 1.2558 9 6 8.8391 0.1820 1.0611 10 8 9.3028 -0.0013 -0.0446 11 7 9.6600 0.3576 2.1154 12 7 11.0490 0.3289 1.9342 13 6 11.8698 0.5050 2.9885 14 8 11.4062 0.6878 4.0942 15 6 13.3639 0.4737 2.7937 16 16 14.1855 0.7383 4.3846 17 6 15.8705 0.6543 3.8765 18 1 16.1135 0.4822 2.8384 19 6 16.8855 0.8103 4.8102 20 7 16.5893 1.0206 6.0754 21 14 18.6720 0.7219 4.2715 22 1 18.9400 1.7846 3.2694 23 1 19.5546 0.9191 5.4493 24 1 18.9416 -0.6076 3.6673 25 6 4.6461 -0.1962 -1.1882 26 6 3.2688 -0.1974 -1.1928 27 1 2.7309 0.3627 2.1152 28 1 5.1882 0.3535 2.1096 29 1 7.0512 1.1823 1.6594 30 1 7.0531 -0.5736 1.9513 31 1 9.2892 0.5045 2.9996 32 1 11.4198 0.1823 1.0500 33 1 13.6574 -0.4955 2.3904 34 1 13.6562 1.2603 2.0981 35 1 17.2987 1.1300 6.7280 36 1 5.1885 -0.3488 -2.1096 37 1 2.7313 -0.3513 -2.1167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915188421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:10 Heat of formation + Delta-G solvation = -12.635829 kcal Electronic energy + Delta-G solvation = -23312.378168 eV Core-core repulsion = 19376.463185 eV Total energy + Delta-G solvation = -3935.914983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13952 -40.28458 -39.04370 -38.21395 -36.57242 -35.40451 -32.51630 -32.40216 -31.86216 -31.15337 -29.55955 -27.87508 -25.56421 -23.99958 -23.59763 -21.72306 -21.16680 -19.53547 -18.98229 -18.23496 -17.91090 -17.37734 -17.05338 -16.58117 -15.85128 -15.55382 -15.24473 -14.91800 -14.87188 -14.77658 -14.43234 -14.33962 -14.26513 -14.18178 -13.56298 -13.50765 -13.01713 -12.97432 -12.71344 -12.67345 -12.44404 -11.67333 -11.60065 -11.34504 -11.14256 -11.08994 -10.86912 -10.53636 -9.94906 -9.87153 -9.78714 -9.13900 -8.90452 -8.53497 -8.39421 -6.62394 -6.30343 -4.02753 0.22875 0.63787 1.29387 1.95990 2.21138 2.40509 2.53483 2.76899 3.11716 3.19306 3.24249 3.28992 3.33383 3.40658 3.68912 4.03402 4.11371 4.17405 4.25666 4.35959 4.38444 4.48904 4.75721 4.86856 4.92568 5.05559 5.28200 5.35364 5.46193 5.55250 5.67996 5.68438 5.88367 5.96751 6.41773 6.45376 6.63857 7.03085 7.34716 7.51799 7.62741 8.26542 8.30514 9.15379 10.76965 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.050830 B = 0.001462 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.727638 B =19146.130630 C =19676.410299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.258 3.742 3 C -0.072 4.072 4 C -0.025 4.025 5 C -0.214 4.214 6 C 0.163 3.837 7 O -0.281 6.281 8 C 0.049 3.951 9 C 0.513 3.487 10 O -0.518 6.518 11 N -0.515 5.515 12 N -0.529 5.529 13 C 0.537 3.463 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.050 6.050 17 C -0.540 4.540 18 H 0.075 0.925 19 C 0.076 3.924 20 N -0.868 5.868 21 Si 0.920 3.080 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.148 4.148 26 C -0.028 4.028 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.433 0.567 32 H 0.432 0.568 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.270 0.730 36 H 0.146 0.854 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.724 -2.011 -12.046 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.057 4.057 3 C -0.076 4.076 4 C -0.046 4.046 5 C -0.232 4.232 6 C 0.116 3.884 7 O -0.192 6.192 8 C -0.031 4.031 9 C 0.297 3.703 10 O -0.392 6.392 11 N -0.263 5.263 12 N -0.281 5.281 13 C 0.323 3.677 14 O -0.387 6.387 15 C -0.298 4.298 16 S 0.176 5.824 17 C -0.688 4.688 18 H 0.093 0.907 19 C -0.134 4.134 20 N -0.503 5.503 21 Si 0.746 3.254 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.167 4.167 26 C -0.048 4.048 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.275 0.725 32 H 0.274 0.726 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.711 -1.833 -10.972 28.015 hybrid contribution 2.072 -0.212 -1.295 2.453 sum -23.640 -2.045 -12.267 26.711 Atomic orbital electron populations 1.81285 1.12097 1.09344 1.07124 1.25639 0.92551 0.93556 0.93951 1.15936 0.84478 1.11846 0.95365 1.20973 0.93322 0.93374 0.96896 1.21248 0.94945 1.09175 0.97853 1.19326 0.81951 0.92771 0.94352 1.86139 1.16172 1.85961 1.30971 1.22337 0.89753 1.04635 0.86340 1.20014 0.87595 0.78352 0.84322 1.90802 1.76704 1.47896 1.23769 1.44460 0.95852 1.73826 1.12185 1.45225 0.92708 1.76846 1.13346 1.20744 0.88289 0.75448 0.83185 1.90729 1.76782 1.47414 1.23781 1.23499 0.91043 1.05997 1.09228 1.85418 1.01392 1.94180 1.01435 1.22826 0.90858 1.57802 0.97274 0.90712 1.24984 0.99641 0.94306 0.94459 1.69992 1.33704 1.45257 1.01298 0.86203 0.82108 0.78883 0.78206 1.19859 1.20773 1.19852 1.20396 0.93098 1.05915 0.97243 1.20996 0.92968 0.93922 0.96954 0.84447 0.84025 0.87703 0.87710 0.72464 0.72595 0.88343 0.88347 0.92005 0.83653 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.22 18.54 41.83 0.78 -3.45 16 2 C 0.26 1.88 15.33 -22.47 -0.34 1.54 16 3 C -0.07 -0.37 5.74 -106.84 -0.61 -0.98 16 4 C -0.03 -0.10 9.75 -39.20 -0.38 -0.48 16 5 C -0.21 -0.83 9.01 -39.49 -0.36 -1.18 16 6 C 0.16 0.93 6.69 -39.04 -0.26 0.67 16 7 O -0.28 -2.12 9.66 -38.88 -0.38 -2.50 16 8 C 0.05 0.26 5.21 36.00 0.19 0.44 16 9 C 0.51 4.85 8.02 -10.99 -0.09 4.76 16 10 O -0.52 -7.01 16.34 -14.36 -0.23 -7.25 16 11 N -0.51 -5.13 6.26 31.22 0.20 -4.93 16 12 N -0.53 -6.62 6.26 31.22 0.20 -6.43 16 13 C 0.54 8.76 7.96 -10.99 -0.09 8.67 16 14 O -0.51 -9.98 15.70 5.56 0.09 -9.89 16 15 C -0.15 -2.64 6.16 36.01 0.22 -2.42 16 16 S -0.05 -1.27 20.57 -107.50 -2.21 -3.48 16 17 C -0.54 -14.60 9.50 30.94 0.29 -14.30 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.08 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.13 13.22 55.49 0.73 -24.40 16 21 Si 0.92 20.61 29.55 -169.99 -5.02 15.59 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C -0.15 -0.74 9.97 -39.50 -0.39 -1.13 16 26 C -0.03 -0.12 9.75 -39.20 -0.38 -0.50 16 27 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 28 H 0.14 0.22 6.28 -52.48 -0.33 -0.11 16 29 H 0.11 0.25 7.65 -51.93 -0.40 -0.14 16 30 H 0.11 0.25 7.65 -51.93 -0.40 -0.14 16 31 H 0.43 3.58 8.00 -182.60 -1.46 2.12 16 32 H 0.43 4.88 8.00 -182.60 -1.46 3.42 16 33 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 34 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.15 0.62 8.06 -52.48 -0.42 0.19 16 37 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -36.82 360.16 -8.44 -45.25 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.70 Total: -1.01 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.30 Total: -2.94 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 1.90 Total: -39.20 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.52 Total: -19.64 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -2.21 Total: -3.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.82 -8.44 -45.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915188421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.617 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds