Wall clock time and date at job start Tue Mar 31 2020 18:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09007 * 260.27845 * 3 2 1 5 5 C 1.37733 * 119.90124 * 179.73976 * 4 3 2 6 6 C 1.38971 * 120.09390 * 0.53731 * 5 4 3 7 7 O 1.35754 * 119.90662 * 179.69492 * 6 5 4 8 8 C 1.42904 * 117.00050 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99906 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00385 * 180.02562 * 9 8 7 12 12 N 1.40102 * 120.00183 * 180.02562 * 11 9 8 13 13 C 1.34770 * 119.99843 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00482 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00090 * 179.97438 * 13 12 11 16 16 S 1.80996 * 109.47477 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00159 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99682 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00134 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00077 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46995 * 60.00231 * 21 19 17 23 23 H 1.48498 * 109.47059 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46971 * 300.00170 * 21 19 17 25 25 C 1.38962 * 120.18650 * 359.71703 * 6 5 4 26 26 C 1.37732 * 120.09997 * 0.02562 * 25 6 5 27 27 H 1.08001 * 120.05457 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.95573 * 180.25420 * 5 4 3 29 29 H 1.09004 * 109.47351 * 300.00064 * 8 7 6 30 30 H 1.09005 * 109.46933 * 59.99727 * 8 7 6 31 31 H 0.97000 * 119.99907 * 359.97438 * 11 9 8 32 32 H 0.97000 * 119.99910 * 359.97438 * 12 11 9 33 33 H 1.09004 * 109.46888 * 300.00378 * 15 13 12 34 34 H 1.09002 * 109.46743 * 59.99889 * 15 13 12 35 35 H 0.97000 * 120.00422 * 180.02562 * 20 19 17 36 36 H 1.08003 * 119.94957 * 179.97438 * 25 6 5 37 37 H 1.07996 * 120.04713 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.2051 1.1919 5 6 4.6459 0.1996 1.1883 6 6 5.3389 0.0023 0.0000 7 8 6.6964 0.0038 -0.0002 8 6 7.3451 0.2133 1.2558 9 6 8.8391 0.1820 1.0611 10 8 9.3028 -0.0013 -0.0446 11 7 9.6600 0.3576 2.1154 12 7 11.0490 0.3289 1.9342 13 6 11.8698 0.5050 2.9885 14 8 11.4062 0.6878 4.0942 15 6 13.3639 0.4737 2.7937 16 16 14.1855 0.7383 4.3846 17 6 15.8705 0.6543 3.8765 18 1 16.1135 0.4822 2.8384 19 6 16.8855 0.8103 4.8102 20 7 16.5893 1.0206 6.0754 21 14 18.6720 0.7219 4.2715 22 1 18.9400 1.7846 3.2694 23 1 19.5546 0.9191 5.4493 24 1 18.9416 -0.6076 3.6673 25 6 4.6461 -0.1962 -1.1882 26 6 3.2688 -0.1974 -1.1928 27 1 2.7309 0.3627 2.1152 28 1 5.1882 0.3535 2.1096 29 1 7.0512 1.1823 1.6594 30 1 7.0531 -0.5736 1.9513 31 1 9.2892 0.5045 2.9996 32 1 11.4198 0.1823 1.0500 33 1 13.6574 -0.4955 2.3904 34 1 13.6562 1.2603 2.0981 35 1 17.2987 1.1300 6.7280 36 1 5.1885 -0.3488 -2.1096 37 1 2.7313 -0.3513 -2.1167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915188421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:10 Heat of formation + Delta-G solvation = -38.466855 kcal Electronic energy + Delta-G solvation = -23313.498285 eV Core-core repulsion = 19376.463185 eV Total energy + Delta-G solvation = -3937.035100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73042 -41.08907 -40.01731 -38.79762 -37.15880 -36.44897 -34.56615 -33.37490 -32.25871 -31.61771 -30.58710 -28.69147 -27.60826 -24.41157 -23.99304 -22.71221 -22.11023 -19.98458 -19.81636 -19.51007 -18.89344 -18.44556 -17.56286 -17.37993 -16.85579 -16.67711 -16.66719 -16.14120 -15.64304 -15.62506 -15.41335 -14.97300 -14.94841 -14.87309 -14.52254 -14.49020 -14.06899 -13.85583 -13.55355 -13.34088 -13.15704 -13.09372 -12.85862 -12.64650 -12.48428 -12.03812 -11.94384 -11.77315 -11.44014 -11.13415 -11.11052 -10.29303 -10.07739 -9.55747 -9.29101 -8.64355 -8.33454 -6.10740 -0.15936 0.34993 0.41365 1.12381 1.34437 1.46012 1.51265 1.57767 1.61693 1.65821 1.93759 2.07489 2.28130 2.89225 2.89449 2.97328 3.01584 3.23001 3.46044 3.76867 3.91431 3.94190 4.06723 4.10955 4.19279 4.27258 4.45801 4.51614 4.58796 5.01591 5.03407 5.23222 5.36165 5.43257 5.44996 5.52761 5.64576 6.21547 6.22139 6.38317 6.49945 6.74076 7.09011 7.20390 8.75126 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.050830 B = 0.001462 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.727638 B =19146.130630 C =19676.410299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.284 3.716 3 C -0.085 4.085 4 C -0.021 4.021 5 C -0.208 4.208 6 C 0.154 3.846 7 O -0.309 6.309 8 C 0.050 3.950 9 C 0.516 3.484 10 O -0.562 6.562 11 N -0.510 5.510 12 N -0.516 5.516 13 C 0.544 3.456 14 O -0.549 6.549 15 C -0.126 4.126 16 S -0.132 6.132 17 C -0.550 4.550 18 H 0.084 0.916 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 0.994 3.006 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.159 4.159 26 C -0.022 4.022 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.443 0.557 32 H 0.439 0.561 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.271 0.729 36 H 0.147 0.853 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.882 -2.159 -12.939 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.030 4.030 3 C -0.089 4.089 4 C -0.041 4.041 5 C -0.226 4.226 6 C 0.107 3.893 7 O -0.221 6.221 8 C -0.028 4.028 9 C 0.303 3.697 10 O -0.438 6.438 11 N -0.260 5.260 12 N -0.267 5.267 13 C 0.330 3.670 14 O -0.425 6.425 15 C -0.279 4.279 16 S 0.095 5.905 17 C -0.698 4.698 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.546 5.546 21 Si 0.816 3.184 22 H -0.188 1.188 23 H -0.205 1.205 24 H -0.188 1.188 25 C -0.178 4.178 26 C -0.043 4.043 27 H 0.174 0.826 28 H 0.188 0.812 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.287 0.713 32 H 0.283 0.717 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.165 0.835 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.900 -1.986 -11.895 28.571 hybrid contribution 2.022 -0.185 -1.131 2.324 sum -23.879 -2.171 -13.026 27.287 Atomic orbital electron populations 1.81306 1.13671 1.11530 1.08887 1.25924 0.92774 0.91957 0.92355 1.16052 0.83262 1.13203 0.96378 1.21208 0.93544 0.92279 0.97084 1.21503 0.94815 1.08064 0.98241 1.19502 0.81338 0.93263 0.95207 1.86087 1.17179 1.86459 1.32325 1.22566 0.86096 1.07901 0.86264 1.20883 0.89199 0.76443 0.83186 1.90789 1.77745 1.49799 1.25458 1.44661 0.94154 1.73983 1.13185 1.44797 0.94347 1.74988 1.12561 1.20206 0.87895 0.75575 0.83309 1.90721 1.77124 1.49446 1.25207 1.23296 0.91990 1.07687 1.04879 1.85496 1.02531 1.94630 1.07851 1.23204 0.91494 1.57321 0.97801 0.89745 1.26036 1.04562 0.93727 0.94389 1.70149 1.35148 1.46644 1.02655 0.85065 0.76026 0.79408 0.77905 1.18783 1.20525 1.18770 1.20520 0.93357 1.06363 0.97553 1.21116 0.92742 0.93072 0.97345 0.82650 0.81199 0.84183 0.84194 0.71337 0.71693 0.86431 0.86429 0.91968 0.83522 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.51 18.54 19.00 0.35 -9.16 16 2 C 0.28 3.90 15.33 88.33 1.35 5.26 16 3 C -0.09 -0.71 5.74 -21.30 -0.12 -0.84 16 4 C -0.02 -0.11 9.75 22.52 0.22 0.11 16 5 C -0.21 -0.88 9.01 22.33 0.20 -0.68 16 6 C 0.15 1.37 6.69 22.62 0.15 1.52 16 7 O -0.31 -3.91 9.66 -71.76 -0.69 -4.61 16 8 C 0.05 0.35 5.21 71.23 0.37 0.72 16 9 C 0.52 8.56 8.02 87.66 0.70 9.26 16 10 O -0.56 -14.46 16.34 15.99 0.26 -14.20 16 11 N -0.51 -9.01 6.26 -173.53 -1.09 -10.10 16 12 N -0.52 -12.04 6.26 -173.54 -1.09 -13.12 16 13 C 0.54 17.17 7.96 87.66 0.70 17.87 16 14 O -0.55 -21.08 15.70 -3.03 -0.05 -21.13 16 15 C -0.13 -4.44 6.16 71.24 0.44 -4.00 16 16 S -0.13 -6.75 20.57 -56.49 -1.16 -7.91 16 17 C -0.55 -29.79 9.50 67.95 0.65 -29.14 16 18 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 19 C 0.02 0.99 5.49 84.86 0.47 1.45 16 20 N -0.91 -53.59 13.22 21.65 0.29 -53.31 16 21 Si 0.99 41.92 29.55 68.60 2.03 43.95 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 25 C -0.16 -1.35 9.97 22.32 0.22 -1.13 16 26 C -0.02 -0.16 9.75 22.52 0.22 0.06 16 27 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 28 H 0.17 -0.32 6.28 -2.91 -0.02 -0.34 16 29 H 0.14 0.02 7.65 -2.38 -0.02 0.01 16 30 H 0.14 0.03 7.65 -2.38 -0.02 0.01 16 31 H 0.44 6.22 8.00 -213.32 -1.71 4.52 16 32 H 0.44 9.15 8.00 -213.32 -1.71 7.44 16 33 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 34 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -82.74 360.16 2.17 -80.56 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -2.25 Total: 8.54 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.57 Total: 0.48 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.53 Total: -85.68 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.48 Total: -39.93 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: -6.75 SS G_CDS: -1.16 Total: -7.91 kcal Total: -82.74 2.17 -80.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915188421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.098 kcal (2) G-P(sol) polarization free energy of solvation -82.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds