Wall clock time and date at job start Tue Mar 31 2020 19:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99679 * 2 1 4 4 H 1.48500 * 109.46862 * 240.00273 * 3 2 1 5 5 H 1.48504 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47037 * 120.00442 * 3 2 1 7 7 C 1.37868 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00431 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99983 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.42894 * 113.99963 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47111 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47330 * 64.99658 * 12 11 10 14 14 C 1.34740 * 117.00004 * 180.02562 * 13 12 11 15 15 O 1.21498 * 119.99945 * 359.97438 * 14 13 12 16 16 C 1.47493 * 119.99995 * 180.02562 * 14 13 12 17 17 C 1.39620 * 120.50357 * 359.97438 * 16 14 13 18 18 N 1.31616 * 120.61861 * 180.02562 * 17 16 14 19 19 C 1.32442 * 121.80561 * 0.02562 * 18 17 16 20 20 O 1.35489 * 119.52118 * 179.97438 * 19 18 17 21 21 C 1.39146 * 120.95892 * 0.25320 * 19 18 17 22 22 C 1.50703 * 120.36327 * 179.72366 * 21 19 18 23 23 F 1.39895 * 109.47001 * 180.02562 * 22 21 19 24 24 F 1.39905 * 109.46998 * 299.99936 * 22 21 19 25 25 F 1.39895 * 109.47081 * 59.99802 * 22 21 19 26 26 C 1.37971 * 119.26910 * 359.49386 * 21 19 18 27 27 H 0.97002 * 120.00159 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46882 * 60.00113 * 9 7 2 29 29 H 1.09002 * 109.46953 * 300.00275 * 9 7 2 30 30 H 1.08996 * 109.47874 * 60.00174 * 11 10 9 31 31 H 1.08999 * 109.47089 * 299.99401 * 11 10 9 32 32 H 1.08998 * 109.46961 * 304.99779 * 12 11 10 33 33 H 1.08999 * 109.47348 * 185.00001 * 12 11 10 34 34 H 1.08010 * 119.68915 * 0.04717 * 17 16 14 35 35 H 0.96700 * 114.00200 * 89.99972 * 20 19 18 36 36 H 1.08007 * 120.81981 * 180.22156 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8753 -0.0011 12 6 2.6482 -5.9561 -0.0004 13 8 3.3986 -5.8886 1.2407 14 6 4.3971 -6.7791 1.4011 15 8 4.6339 -7.5901 0.5280 16 6 5.2018 -6.7700 2.6371 17 6 4.9385 -5.8431 3.6475 18 7 5.6555 -5.8327 4.7512 19 6 6.6456 -6.6899 4.9484 20 8 7.3542 -6.6374 6.1020 21 6 6.9725 -7.6398 3.9856 22 6 8.1059 -8.6047 4.2215 23 9 8.2349 -9.4517 3.1156 24 9 9.2955 -7.8912 4.4032 25 9 7.8397 -9.3663 5.3643 26 6 6.2445 -7.6917 2.8148 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 0.9454 -4.9823 -0.8913 31 1 0.9449 -4.9827 0.8887 32 1 3.3224 -5.7955 -0.8417 33 1 2.1824 -6.9374 -0.0904 34 1 4.1386 -5.1281 3.5224 35 1 6.9946 -7.1894 6.8100 36 1 6.4743 -8.4212 2.0521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924073321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:57 Heat of formation + Delta-G solvation = -281.840526 kcal Electronic energy + Delta-G solvation = -27946.091203 eV Core-core repulsion = 22981.600266 eV Total energy + Delta-G solvation = -4964.490937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.61055 -48.15375 -48.03442 -41.46663 -40.22404 -37.84635 -37.15498 -36.20933 -33.87102 -32.83389 -32.03790 -30.10417 -27.06416 -26.86378 -25.29069 -23.69590 -22.65240 -22.29367 -21.39136 -19.73708 -19.17255 -18.95783 -18.90579 -17.97704 -17.01638 -16.74933 -16.69988 -16.50893 -16.29505 -15.45839 -14.98390 -14.90662 -14.78187 -14.64415 -14.49164 -14.42360 -14.22866 -14.20810 -13.85356 -13.78963 -13.65105 -13.01286 -12.97596 -12.70028 -12.55736 -12.03847 -11.52951 -11.10885 -10.97709 -10.89333 -10.83923 -10.75950 -10.54372 -10.20778 -10.10404 -9.83723 -9.19465 -8.93726 -8.27228 -6.15885 -4.18041 -0.28473 0.20551 2.00492 2.02321 2.39662 2.72530 2.98508 3.13845 3.30131 3.33011 3.36767 3.48538 3.88891 3.90527 4.09225 4.26860 4.31075 4.45683 4.58831 4.63697 4.94942 5.07887 5.20882 5.26494 5.33711 5.59870 5.75101 5.82837 5.94561 6.29624 6.65840 6.98652 7.04833 7.33694 7.50034 7.73316 8.07173 8.45332 8.93865 9.47105 10.95483 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.002363 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.723967 B =11844.897173 C =12902.873272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.060 3.940 12 C 0.076 3.924 13 O -0.333 6.333 14 C 0.517 3.483 15 O -0.503 6.503 16 C -0.188 4.188 17 C 0.224 3.776 18 N -0.500 5.500 19 C 0.400 3.600 20 O -0.470 6.470 21 C -0.274 4.274 22 C 0.526 3.474 23 F -0.172 7.172 24 F -0.165 7.165 25 F -0.175 7.175 26 C 0.050 3.950 27 H 0.265 0.735 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.196 0.804 35 H 0.415 0.585 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.822 -20.371 10.278 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.249 6.249 14 C 0.360 3.640 15 O -0.393 6.393 16 C -0.191 4.191 17 C 0.066 3.934 18 N -0.217 5.217 19 C 0.220 3.780 20 O -0.280 6.280 21 C -0.280 4.280 22 C 0.471 3.529 23 F -0.154 7.154 24 F -0.146 7.146 25 F -0.156 7.156 26 C 0.025 3.975 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.213 0.787 35 H 0.277 0.723 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.139 -19.490 10.403 25.208 hybrid contribution 0.139 -0.196 -0.439 0.500 sum 12.278 -19.686 9.964 25.250 Atomic orbital electron populations 1.69946 1.06106 1.27383 1.50320 1.24939 0.94984 0.99454 0.95023 0.86388 0.79326 0.81825 0.78916 1.20007 1.21131 1.19918 1.20999 0.94068 0.89277 1.51183 0.91542 1.20242 0.88696 0.83399 0.95559 1.87915 1.35372 1.12587 1.95248 1.22341 0.93114 0.85446 1.00834 1.23340 0.93618 0.99191 0.83523 1.86612 1.42835 1.53192 1.42260 1.20444 0.79052 0.78710 0.85774 1.90862 1.67891 1.37947 1.42611 1.20164 1.00422 1.02095 0.96433 1.23565 0.93388 0.92154 0.84269 1.67611 1.06318 1.23360 1.24432 1.19077 0.85903 0.86063 0.86936 1.84728 1.49894 1.71680 1.21651 1.21040 1.03376 1.02801 1.00736 1.17690 0.81834 0.79190 0.74195 1.93204 1.96195 1.72559 1.53413 1.93271 1.48495 1.77882 1.94980 1.93209 1.93867 1.77203 1.51304 1.21500 0.87993 0.93925 0.94064 0.92526 0.97577 0.97430 0.91648 0.93012 0.90065 0.90000 0.78722 0.72329 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.84 9.43 -34.44 -0.32 -15.17 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.20 5.12 5.69 36.01 0.20 5.32 16 10 O -0.39 -8.89 10.30 -38.80 -0.40 -9.29 16 11 C 0.06 1.00 6.33 37.16 0.24 1.23 16 12 C 0.08 1.06 5.85 37.16 0.22 1.28 16 13 O -0.33 -4.74 9.46 -43.38 -0.41 -5.15 16 14 C 0.52 6.68 7.90 34.50 0.27 6.96 16 15 O -0.50 -7.32 16.20 -19.26 -0.31 -7.63 16 16 C -0.19 -2.00 5.89 -104.84 -0.62 -2.62 16 17 C 0.22 2.33 10.78 -17.13 -0.18 2.15 16 18 N -0.50 -5.43 10.37 -12.95 -0.13 -5.57 16 19 C 0.40 3.81 7.64 -16.95 -0.13 3.68 16 20 O -0.47 -3.70 12.46 -18.16 -0.23 -3.92 16 21 C -0.27 -2.47 5.39 -104.38 -0.56 -3.03 16 22 C 0.53 4.53 2.99 36.01 0.11 4.64 16 23 F -0.17 -1.51 16.04 2.25 0.04 -1.48 16 24 F -0.17 -1.62 16.96 2.25 0.04 -1.59 16 25 F -0.17 -1.36 16.96 2.25 0.04 -1.32 16 26 C 0.05 0.47 9.07 -38.91 -0.35 0.12 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.20 1.90 7.61 -52.48 -0.40 1.50 16 35 H 0.42 1.19 9.06 45.56 0.41 1.60 16 36 H 0.17 1.42 6.92 -52.48 -0.36 1.06 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -33.50 343.86 -4.13 -37.63 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: -2.43 Total: -3.88 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.23 Total: 6.08 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.60 Total: -31.12 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.35 Total: -25.99 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.11 Total: -4.38 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.50 -4.13 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924073321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.208 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds