Wall clock time and date at job start Tue Mar 31 2020 19:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99679 * 2 1 4 4 H 1.48500 * 109.46862 * 240.00273 * 3 2 1 5 5 H 1.48504 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47037 * 120.00442 * 3 2 1 7 7 C 1.37868 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00431 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99983 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.42894 * 113.99963 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47111 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47330 * 64.99658 * 12 11 10 14 14 C 1.34740 * 117.00004 * 180.02562 * 13 12 11 15 15 O 1.21498 * 119.99945 * 359.97438 * 14 13 12 16 16 C 1.47493 * 119.99995 * 180.02562 * 14 13 12 17 17 C 1.39620 * 120.50357 * 359.97438 * 16 14 13 18 18 N 1.31616 * 120.61861 * 180.02562 * 17 16 14 19 19 C 1.32442 * 121.80561 * 0.02562 * 18 17 16 20 20 O 1.35489 * 119.52118 * 179.97438 * 19 18 17 21 21 C 1.39146 * 120.95892 * 0.25320 * 19 18 17 22 22 C 1.50703 * 120.36327 * 179.72366 * 21 19 18 23 23 F 1.39895 * 109.47001 * 180.02562 * 22 21 19 24 24 F 1.39905 * 109.46998 * 299.99936 * 22 21 19 25 25 F 1.39895 * 109.47081 * 59.99802 * 22 21 19 26 26 C 1.37971 * 119.26910 * 359.49386 * 21 19 18 27 27 H 0.97002 * 120.00159 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46882 * 60.00113 * 9 7 2 29 29 H 1.09002 * 109.46953 * 300.00275 * 9 7 2 30 30 H 1.08996 * 109.47874 * 60.00174 * 11 10 9 31 31 H 1.08999 * 109.47089 * 299.99401 * 11 10 9 32 32 H 1.08998 * 109.46961 * 304.99779 * 12 11 10 33 33 H 1.08999 * 109.47348 * 185.00001 * 12 11 10 34 34 H 1.08010 * 119.68915 * 0.04717 * 17 16 14 35 35 H 0.96700 * 114.00200 * 89.99972 * 20 19 18 36 36 H 1.08007 * 120.81981 * 180.22156 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8753 -0.0011 12 6 2.6482 -5.9561 -0.0004 13 8 3.3986 -5.8886 1.2407 14 6 4.3971 -6.7791 1.4011 15 8 4.6339 -7.5901 0.5280 16 6 5.2018 -6.7700 2.6371 17 6 4.9385 -5.8431 3.6475 18 7 5.6555 -5.8327 4.7512 19 6 6.6456 -6.6899 4.9484 20 8 7.3542 -6.6374 6.1020 21 6 6.9725 -7.6398 3.9856 22 6 8.1059 -8.6047 4.2215 23 9 8.2349 -9.4517 3.1156 24 9 9.2955 -7.8912 4.4032 25 9 7.8397 -9.3663 5.3643 26 6 6.2445 -7.6917 2.8148 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 0.9454 -4.9823 -0.8913 31 1 0.9449 -4.9827 0.8887 32 1 3.3224 -5.7955 -0.8417 33 1 2.1824 -6.9374 -0.0904 34 1 4.1386 -5.1281 3.5224 35 1 6.9946 -7.1894 6.8100 36 1 6.4743 -8.4212 2.0521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924073321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:56 Heat of formation + Delta-G solvation = -306.513636 kcal Electronic energy + Delta-G solvation = -27947.161109 eV Core-core repulsion = 22981.600266 eV Total energy + Delta-G solvation = -4965.560843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.30278 -48.83165 -48.74207 -42.30046 -41.20414 -38.82058 -38.40444 -37.49970 -34.93113 -34.64436 -32.92264 -31.45701 -29.01847 -27.63015 -26.20140 -24.55003 -24.45647 -23.64333 -22.39269 -20.42717 -19.98243 -19.69702 -19.62036 -18.86004 -18.64712 -17.95911 -17.77491 -17.60606 -17.23419 -17.03696 -16.36580 -16.21348 -15.67799 -15.61830 -15.45921 -15.24069 -15.17806 -14.94783 -14.90125 -14.66973 -14.48819 -14.36771 -14.08980 -13.75640 -13.56125 -13.25021 -13.19829 -12.92209 -12.69050 -12.46651 -12.08616 -11.84691 -11.76892 -11.67002 -11.27312 -11.00986 -10.87106 -10.62239 -10.24088 -8.30907 -6.42518 -1.06914 -0.55652 1.09170 1.22864 1.41868 1.45550 1.49589 1.53898 2.01545 2.17738 2.35398 2.43260 2.75190 3.03458 3.08676 3.12151 3.21297 3.32420 3.41369 3.71170 3.86494 3.93988 4.14953 4.16860 4.44122 4.49049 4.57949 4.70460 4.84720 4.89052 5.19581 5.23950 5.56043 5.97328 6.10535 6.36999 6.46824 6.53641 6.81931 7.29136 8.80817 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.002363 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.723967 B =11844.897173 C =12902.873272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.080 3.920 13 O -0.346 6.346 14 C 0.522 3.478 15 O -0.522 6.522 16 C -0.196 4.196 17 C 0.227 3.773 18 N -0.519 5.519 19 C 0.408 3.592 20 O -0.475 6.475 21 C -0.273 4.273 22 C 0.532 3.468 23 F -0.172 7.172 24 F -0.172 7.172 25 F -0.168 7.168 26 C 0.060 3.940 27 H 0.271 0.729 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.197 0.803 35 H 0.436 0.564 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.791 -20.666 10.822 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.025 4.025 12 C 0.007 3.993 13 O -0.262 6.262 14 C 0.367 3.633 15 O -0.412 6.412 16 C -0.200 4.200 17 C 0.070 3.930 18 N -0.237 5.237 19 C 0.228 3.772 20 O -0.288 6.288 21 C -0.278 4.278 22 C 0.477 3.523 23 F -0.154 7.154 24 F -0.153 7.153 25 F -0.149 7.149 26 C 0.035 3.965 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.214 0.786 35 H 0.302 0.698 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 13.109 -19.825 10.971 26.177 hybrid contribution -0.151 -0.218 -0.535 0.597 sum 12.959 -20.043 10.436 26.049 Atomic orbital electron populations 1.70045 1.07606 1.28682 1.50469 1.25884 0.95923 1.03169 0.94005 0.85305 0.78168 0.77082 0.79320 1.19190 1.20054 1.19078 1.21367 0.94109 0.90985 1.52254 0.92131 1.19848 0.88508 0.84281 0.93960 1.87855 1.35459 1.14192 1.95353 1.22681 0.94496 0.83236 1.02119 1.23313 0.93043 0.99562 0.83357 1.86599 1.43424 1.53882 1.42318 1.20675 0.78546 0.77939 0.86144 1.90849 1.68373 1.38615 1.43405 1.19997 1.01049 1.03171 0.95773 1.23569 0.93324 0.91982 0.84142 1.67642 1.07151 1.24240 1.24657 1.19165 0.85159 0.85414 0.87466 1.84687 1.49874 1.72373 1.21872 1.21020 1.03424 1.02887 1.00458 1.17559 0.81343 0.79063 0.74366 1.93208 1.96164 1.72507 1.53478 1.93261 1.48901 1.78106 1.95034 1.93224 1.93778 1.76977 1.50914 1.21588 0.87242 0.93443 0.94249 0.92041 0.99070 0.99044 0.89935 0.92136 0.90580 0.86664 0.78612 0.69819 0.80341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.44 0.28 -54.30 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.98 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.96 9.43 25.60 0.24 -31.71 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.21 11.21 5.69 71.24 0.41 11.62 16 10 O -0.41 -18.76 10.30 -145.57 -1.50 -20.26 16 11 C 0.05 1.67 6.33 71.98 0.46 2.13 16 12 C 0.08 2.14 5.85 71.98 0.42 2.56 16 13 O -0.35 -9.65 9.46 -53.84 -0.51 -10.16 16 14 C 0.52 13.12 7.90 70.26 0.55 13.68 16 15 O -0.52 -14.65 16.20 19.84 0.32 -14.33 16 16 C -0.20 -4.04 5.89 -20.00 -0.12 -4.15 16 17 C 0.23 4.62 10.78 85.06 0.92 5.54 16 18 N -0.52 -10.80 10.37 -307.75 -3.19 -13.99 16 19 C 0.41 7.19 7.64 84.82 0.65 7.84 16 20 O -0.47 -6.63 12.46 -87.90 -1.10 -7.73 16 21 C -0.27 -4.51 5.39 -19.71 -0.11 -4.61 16 22 C 0.53 8.28 2.99 71.24 0.21 8.50 16 23 F -0.17 -2.74 16.04 44.97 0.72 -2.02 16 24 F -0.17 -3.12 16.96 44.97 0.76 -2.36 16 25 F -0.17 -2.29 16.96 44.97 0.76 -1.53 16 26 C 0.06 1.04 9.07 22.71 0.21 1.25 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.20 3.82 7.61 -2.91 -0.02 3.80 16 35 H 0.44 1.62 9.06 -74.06 -0.67 0.95 16 36 H 0.18 2.75 6.92 -2.91 -0.02 2.73 16 Total: -1.00 -70.77 343.86 3.38 -67.39 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 0.50 Total: -0.02 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 4.30 Total: 13.59 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -2.91 Total: -68.29 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -2.78 Total: -52.48 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 2.25 Total: -5.91 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.77 3.38 -67.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924073321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.125 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -309.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -306.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds