Wall clock time and date at job start Tue Mar 31 2020 18:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00038 * 2 1 4 4 H 1.48496 * 109.47449 * 85.21492 * 3 2 1 5 5 H 1.48503 * 109.46997 * 205.21873 * 3 2 1 6 6 H 1.48502 * 109.47122 * 325.21656 * 3 2 1 7 7 C 1.37873 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00018 * 5.22563 * 7 2 1 9 9 C 1.50698 * 120.00267 * 185.22255 * 7 2 1 10 10 H 1.09001 * 109.46785 * 305.24186 * 9 7 2 11 11 N 1.46500 * 109.47056 * 65.23956 * 9 7 2 12 12 C 1.34775 * 120.00181 * 204.99816 * 11 9 7 13 13 O 1.21756 * 120.00087 * 0.02562 * 12 11 9 14 14 C 1.46218 * 120.00206 * 180.02562 * 12 11 9 15 15 C 1.36706 * 126.11506 * 180.02562 * 14 12 11 16 16 N 1.30875 * 114.03644 * 180.02562 * 15 14 12 17 17 C 1.30232 * 117.26094 * 359.97438 * 16 15 14 18 18 N 1.37840 * 124.74748 * 180.02562 * 17 16 15 19 19 C 1.46498 * 119.99835 * 359.97438 * 18 17 16 20 20 C 1.53008 * 117.49485 * 223.74206 * 19 18 17 21 21 C 1.53003 * 117.49766 * 155.08580 * 19 18 17 22 22 S 1.70917 * 110.50350 * 359.73155 * 17 16 15 23 23 C 1.53000 * 109.47358 * 185.24172 * 9 7 2 24 24 F 1.39899 * 109.47192 * 54.96451 * 23 9 7 25 25 F 1.39898 * 109.47278 * 174.97007 * 23 9 7 26 26 F 1.39904 * 109.46872 * 294.96868 * 23 9 7 27 27 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99842 * 25.00314 * 11 9 7 29 29 H 1.08005 * 122.98176 * 359.97438 * 15 14 12 30 30 H 0.97009 * 119.99817 * 179.97438 * 18 17 16 31 31 H 1.08997 * 115.55388 * 9.41339 * 19 18 17 32 32 H 1.08991 * 117.49961 * 0.02562 * 20 19 18 33 33 H 1.09003 * 117.49464 * 145.02231 * 20 19 18 34 34 H 1.08999 * 117.49873 * 214.97324 * 21 19 18 35 35 H 1.08998 * 117.50045 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3955 2.1048 1.3951 5 1 3.5935 1.4130 -0.5966 6 1 1.5008 2.6214 -0.7987 7 6 2.0045 -1.1940 0.0005 8 1 1.4678 -2.1275 -0.0842 9 6 3.5068 -1.1967 0.1193 10 1 3.9340 -0.5671 -0.6612 11 7 3.8937 -0.6762 1.4329 12 6 5.1069 -0.1149 1.6048 13 8 5.8812 -0.0400 0.6682 14 6 5.4933 0.4041 2.9160 15 6 6.6854 0.9952 3.2292 16 7 6.7810 1.3733 4.4785 17 6 5.7566 1.1471 5.2503 18 7 5.6905 1.4806 6.5861 19 6 6.8280 2.1383 7.2340 20 6 7.2382 1.6369 8.6201 21 6 6.5399 2.9910 8.4713 22 16 4.5026 0.3863 4.3729 23 6 4.0282 -2.6267 -0.0364 24 9 3.5623 -3.1643 -1.2411 25 9 5.4271 -2.6151 -0.0410 26 9 3.5717 -3.4082 1.0304 27 1 -0.4850 0.8400 -0.0004 28 1 3.2767 -0.7356 2.1790 29 1 7.4784 1.1369 2.5098 30 1 4.8908 1.2796 7.0972 31 1 7.6206 2.4736 6.5651 32 1 6.6621 0.8175 9.0497 33 1 8.3008 1.6427 8.8632 34 1 7.1434 3.8870 8.6167 35 1 5.5043 3.0622 8.8035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:12 Heat of formation + Delta-G solvation = -113.248338 kcal Electronic energy + Delta-G solvation = -26566.322693 eV Core-core repulsion = 22084.188084 eV Total energy + Delta-G solvation = -4482.134609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.09203 -46.60069 -46.57901 -39.96549 -38.91470 -37.86388 -34.89797 -33.85362 -32.52894 -30.14944 -28.39843 -25.16919 -25.02252 -23.11913 -22.80373 -21.76511 -20.63022 -19.63631 -19.12943 -18.08618 -17.58045 -17.05797 -16.69278 -16.51268 -16.38863 -15.79774 -15.16450 -15.07895 -14.63451 -14.36817 -13.94229 -13.74242 -13.48946 -13.46786 -13.12764 -13.04431 -12.94547 -12.77814 -12.72072 -12.67957 -12.21838 -11.97908 -11.80542 -11.48413 -11.18086 -10.91490 -10.69562 -10.14469 -10.01432 -9.95880 -9.87638 -9.49804 -9.35889 -9.00215 -8.54536 -7.79917 -6.53293 -4.67091 0.56384 0.90901 1.67020 2.66068 2.79004 3.08372 3.19574 3.30617 3.47742 3.54299 3.65900 3.93640 4.10396 4.22809 4.46662 4.52250 4.65793 4.91187 4.97972 5.16464 5.20476 5.23596 5.33991 5.41848 5.48849 5.58755 5.64420 6.01917 6.39989 6.58128 6.74240 6.86804 7.01167 7.76910 7.83593 8.18879 8.49089 8.69947 9.00941 10.54873 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.003775 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.260394 B = 7415.727760 C = 8215.417728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.099 3.901 3 Si 0.865 3.135 4 H -0.270 1.270 5 H -0.252 1.252 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.096 0.904 9 C 0.202 3.798 10 H 0.096 0.904 11 N -0.712 5.712 12 C 0.586 3.414 13 O -0.531 6.531 14 C -0.325 4.325 15 C 0.163 3.837 16 N -0.550 5.550 17 C 0.316 3.684 18 N -0.660 5.660 19 C 0.097 3.903 20 C -0.195 4.195 21 C -0.191 4.191 22 S 0.146 5.854 23 C 0.443 3.557 24 F -0.183 7.183 25 F -0.192 7.192 26 F -0.190 7.190 27 H 0.275 0.725 28 H 0.397 0.603 29 H 0.189 0.811 30 H 0.416 0.584 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.506 4.075 15.560 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.110 4.110 3 Si 0.691 3.309 4 H -0.195 1.195 5 H -0.176 1.176 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.114 0.886 9 C 0.099 3.901 10 H 0.113 0.887 11 N -0.364 5.364 12 C 0.371 3.629 13 O -0.410 6.410 14 C -0.451 4.451 15 C 0.005 3.995 16 N -0.274 5.274 17 C -0.052 4.052 18 N -0.297 5.297 19 C -0.011 4.011 20 C -0.234 4.234 21 C -0.230 4.230 22 S 0.397 5.603 23 C 0.387 3.613 24 F -0.164 7.164 25 F -0.174 7.174 26 F -0.172 7.172 27 H 0.085 0.915 28 H 0.234 0.766 29 H 0.205 0.795 30 H 0.253 0.747 31 H 0.160 0.840 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.419 4.162 15.408 18.532 hybrid contribution 0.421 0.648 0.139 0.785 sum 9.840 4.810 15.547 19.017 Atomic orbital electron populations 1.69868 1.06333 1.28248 1.44946 1.24879 0.94748 0.99134 0.92259 0.86930 0.81405 0.83074 0.79496 1.19474 1.17560 1.20767 1.20805 0.86306 0.96583 1.53900 0.88574 1.20315 0.98665 0.85794 0.85279 0.88673 1.47464 1.15229 1.59397 1.14356 1.16954 0.82537 0.77828 0.85551 1.90816 1.51419 1.58017 1.40731 1.25575 1.00425 1.20568 0.98564 1.22046 0.95625 0.91285 0.90505 1.66183 1.27267 1.29113 1.04846 1.23764 0.93976 0.96698 0.90736 1.43176 1.18457 1.63614 1.04405 1.21689 0.91422 0.99249 0.88772 1.23496 1.01935 0.97576 1.00444 1.23443 1.02219 0.95498 1.01854 1.84079 1.16628 1.57613 1.01939 1.21434 0.74657 0.91931 0.73274 1.93110 1.88610 1.88040 1.46674 1.93151 1.30902 1.97110 1.96227 1.93084 1.88913 1.77943 1.57212 0.91522 0.76618 0.79460 0.74654 0.84047 0.88461 0.87844 0.87697 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.52 13.96 55.43 0.77 -22.75 16 2 C 0.10 2.58 5.47 -17.82 -0.10 2.49 16 3 Si 0.87 20.21 26.42 -169.99 -4.49 15.71 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.25 -6.04 6.25 56.52 0.35 -5.68 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -13.81 8.62 -34.44 -0.30 -14.10 16 8 H 0.10 2.67 7.95 -52.48 -0.42 2.25 16 9 C 0.20 4.72 1.41 -69.08 -0.10 4.62 16 10 H 0.10 2.34 6.03 -51.93 -0.31 2.02 16 11 N -0.71 -15.12 3.32 -56.38 -0.19 -15.31 16 12 C 0.59 12.14 7.22 -13.06 -0.09 12.04 16 13 O -0.53 -12.24 15.44 5.14 0.08 -12.16 16 14 C -0.32 -5.61 6.50 -36.93 -0.24 -5.85 16 15 C 0.16 2.56 11.14 -18.51 -0.21 2.35 16 16 N -0.55 -7.94 9.70 -14.77 -0.14 -8.08 16 17 C 0.32 4.03 8.05 -87.98 -0.71 3.32 16 18 N -0.66 -6.15 5.69 -55.88 -0.32 -6.47 16 19 C 0.10 0.79 6.53 -67.93 -0.44 0.35 16 20 C -0.20 -1.21 10.46 -26.69 -0.28 -1.49 16 21 C -0.19 -1.13 10.46 -26.69 -0.28 -1.41 16 22 S 0.15 2.02 22.33 -107.50 -2.40 -0.38 16 23 C 0.44 9.88 2.79 37.16 0.10 9.98 16 24 F -0.18 -4.09 16.86 2.25 0.04 -4.05 16 25 F -0.19 -4.26 15.83 2.25 0.04 -4.23 16 26 F -0.19 -4.12 16.97 2.25 0.04 -4.08 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.40 7.92 7.76 -40.82 -0.32 7.60 16 29 H 0.19 2.70 8.06 -52.48 -0.42 2.28 16 30 H 0.42 2.88 8.95 -40.82 -0.37 2.52 16 31 H 0.14 1.34 7.57 -51.93 -0.39 0.94 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -29.93 332.81 -7.30 -37.23 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.10 Total: 7.26 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -2.64 Total: 12.29 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.12 Total: -52.60 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 0.11 Total: -12.36 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.49 Total: 15.71 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.40 Total: -0.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.93 -7.30 -37.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.020 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds