Wall clock time and date at job start Tue Mar 31 2020 18:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00038 * 2 1 4 4 H 1.48496 * 109.47449 * 85.21492 * 3 2 1 5 5 H 1.48503 * 109.46997 * 205.21873 * 3 2 1 6 6 H 1.48502 * 109.47122 * 325.21656 * 3 2 1 7 7 C 1.37873 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00018 * 5.22563 * 7 2 1 9 9 C 1.50698 * 120.00267 * 185.22255 * 7 2 1 10 10 H 1.09001 * 109.46785 * 305.24186 * 9 7 2 11 11 N 1.46500 * 109.47056 * 65.23956 * 9 7 2 12 12 C 1.34775 * 120.00181 * 204.99816 * 11 9 7 13 13 O 1.21756 * 120.00087 * 0.02562 * 12 11 9 14 14 C 1.46218 * 120.00206 * 180.02562 * 12 11 9 15 15 C 1.36706 * 126.11506 * 180.02562 * 14 12 11 16 16 N 1.30875 * 114.03644 * 180.02562 * 15 14 12 17 17 C 1.30232 * 117.26094 * 359.97438 * 16 15 14 18 18 N 1.37840 * 124.74748 * 180.02562 * 17 16 15 19 19 C 1.46498 * 119.99835 * 359.97438 * 18 17 16 20 20 C 1.53008 * 117.49485 * 223.74206 * 19 18 17 21 21 C 1.53003 * 117.49766 * 155.08580 * 19 18 17 22 22 S 1.70917 * 110.50350 * 359.73155 * 17 16 15 23 23 C 1.53000 * 109.47358 * 185.24172 * 9 7 2 24 24 F 1.39899 * 109.47192 * 54.96451 * 23 9 7 25 25 F 1.39898 * 109.47278 * 174.97007 * 23 9 7 26 26 F 1.39904 * 109.46872 * 294.96868 * 23 9 7 27 27 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99842 * 25.00314 * 11 9 7 29 29 H 1.08005 * 122.98176 * 359.97438 * 15 14 12 30 30 H 0.97009 * 119.99817 * 179.97438 * 18 17 16 31 31 H 1.08997 * 115.55388 * 9.41339 * 19 18 17 32 32 H 1.08991 * 117.49961 * 0.02562 * 20 19 18 33 33 H 1.09003 * 117.49464 * 145.02231 * 20 19 18 34 34 H 1.08999 * 117.49873 * 214.97324 * 21 19 18 35 35 H 1.08998 * 117.50045 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3955 2.1048 1.3951 5 1 3.5935 1.4130 -0.5966 6 1 1.5008 2.6214 -0.7987 7 6 2.0045 -1.1940 0.0005 8 1 1.4678 -2.1275 -0.0842 9 6 3.5068 -1.1967 0.1193 10 1 3.9340 -0.5671 -0.6612 11 7 3.8937 -0.6762 1.4329 12 6 5.1069 -0.1149 1.6048 13 8 5.8812 -0.0400 0.6682 14 6 5.4933 0.4041 2.9160 15 6 6.6854 0.9952 3.2292 16 7 6.7810 1.3733 4.4785 17 6 5.7566 1.1471 5.2503 18 7 5.6905 1.4806 6.5861 19 6 6.8280 2.1383 7.2340 20 6 7.2382 1.6369 8.6201 21 6 6.5399 2.9910 8.4713 22 16 4.5026 0.3863 4.3729 23 6 4.0282 -2.6267 -0.0364 24 9 3.5623 -3.1643 -1.2411 25 9 5.4271 -2.6151 -0.0410 26 9 3.5717 -3.4082 1.0304 27 1 -0.4850 0.8400 -0.0004 28 1 3.2767 -0.7356 2.1790 29 1 7.4784 1.1369 2.5098 30 1 4.8908 1.2796 7.0972 31 1 7.6206 2.4736 6.5651 32 1 6.6621 0.8175 9.0497 33 1 8.3008 1.6427 8.8632 34 1 7.1434 3.8870 8.6167 35 1 5.5043 3.0622 8.8035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:11 Heat of formation + Delta-G solvation = -132.597489 kcal Electronic energy + Delta-G solvation = -26567.161735 eV Core-core repulsion = 22084.188084 eV Total energy + Delta-G solvation = -4482.973651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.90756 -48.41184 -48.39041 -41.17819 -40.32690 -38.66073 -36.69642 -34.72771 -34.45605 -31.73603 -29.82928 -26.96879 -26.26281 -24.26050 -23.27045 -23.14357 -22.17971 -20.75698 -20.49849 -19.74148 -19.37323 -18.73333 -18.40666 -17.89740 -17.74288 -16.79495 -16.59634 -16.30166 -16.08348 -15.46621 -15.35017 -15.28051 -15.25025 -14.98799 -14.85622 -14.78613 -14.58871 -14.53679 -14.46818 -13.75420 -13.68962 -13.07833 -12.99210 -12.64150 -12.56376 -12.41739 -12.02762 -11.91264 -11.48322 -11.35957 -11.02488 -10.88947 -10.77350 -10.46971 -10.25801 -8.79108 -8.55509 -6.72945 -0.60594 -0.16091 0.52002 1.22455 1.29925 1.41749 1.44676 1.85243 1.93992 2.07807 2.15173 2.25864 2.93767 2.95113 3.14659 3.33147 3.34960 3.49491 3.81017 3.92753 4.02541 4.08415 4.26288 4.54559 4.61463 4.77632 4.91961 4.98955 5.05176 5.20906 5.27463 5.68711 5.85140 5.95087 6.40337 6.50029 6.75486 6.97667 7.08847 8.56811 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.003775 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.260394 B = 7415.727760 C = 8215.417728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.913 3.087 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.210 3.790 10 H 0.083 0.917 11 N -0.713 5.713 12 C 0.588 3.412 13 O -0.563 6.563 14 C -0.373 4.373 15 C 0.185 3.815 16 N -0.565 5.565 17 C 0.331 3.669 18 N -0.639 5.639 19 C 0.065 3.935 20 C -0.183 4.183 21 C -0.173 4.173 22 S 0.167 5.833 23 C 0.446 3.554 24 F -0.184 7.184 25 F -0.190 7.190 26 F -0.185 7.185 27 H 0.280 0.720 28 H 0.404 0.596 29 H 0.194 0.806 30 H 0.429 0.571 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.439 5.366 18.350 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.137 4.137 3 Si 0.737 3.263 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.106 3.894 10 H 0.101 0.899 11 N -0.366 5.366 12 C 0.376 3.624 13 O -0.444 6.444 14 C -0.499 4.499 15 C 0.025 3.975 16 N -0.290 5.290 17 C -0.038 4.038 18 N -0.276 5.276 19 C -0.043 4.043 20 C -0.222 4.222 21 C -0.211 4.211 22 S 0.418 5.582 23 C 0.390 3.610 24 F -0.165 7.165 25 F -0.171 7.171 26 F -0.167 7.167 27 H 0.090 0.910 28 H 0.242 0.758 29 H 0.211 0.789 30 H 0.269 0.731 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.329 5.462 18.291 21.705 hybrid contribution 0.222 0.257 -0.516 0.618 sum 10.551 5.719 17.775 21.447 Atomic orbital electron populations 1.69927 1.07486 1.29292 1.46447 1.25354 0.95129 1.01379 0.91882 0.86191 0.79602 0.80282 0.80220 1.17815 1.18839 1.20267 1.20732 0.87391 0.95591 1.54195 0.91369 1.19973 0.97094 0.86290 0.86074 0.89920 1.47077 1.16036 1.59919 1.13552 1.17233 0.81580 0.76941 0.86634 1.90783 1.52043 1.59267 1.42301 1.25145 1.02339 1.24031 0.98430 1.22216 0.95032 0.89271 0.91017 1.66278 1.27883 1.30374 1.04490 1.23988 0.93173 0.94924 0.91687 1.43412 1.19381 1.61658 1.03100 1.21846 0.91233 1.01633 0.89542 1.23564 1.02745 0.98071 0.97832 1.23536 1.03066 0.95724 0.98812 1.83894 1.15923 1.58087 1.00296 1.21270 0.74729 0.91619 0.73357 1.93106 1.88650 1.88018 1.46775 1.93156 1.30636 1.97089 1.96223 1.93088 1.88887 1.77745 1.56981 0.90966 0.75849 0.78949 0.73057 0.85414 0.87746 0.87018 0.86627 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.40 13.96 21.45 0.30 -49.10 16 2 C 0.07 3.61 5.47 84.65 0.46 4.08 16 3 Si 0.91 41.58 26.42 68.60 1.81 43.39 16 4 H -0.25 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.26 -12.52 6.25 99.48 0.62 -11.89 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -28.24 8.62 25.60 0.22 -28.02 16 8 H 0.07 3.90 7.95 -2.91 -0.02 3.88 16 9 C 0.21 9.89 1.41 44.24 0.06 9.95 16 10 H 0.08 4.13 6.03 -2.39 -0.01 4.11 16 11 N -0.71 -30.23 3.32 -450.49 -1.50 -31.73 16 12 C 0.59 24.25 7.22 86.32 0.62 24.88 16 13 O -0.56 -26.11 15.44 -4.53 -0.07 -26.18 16 14 C -0.37 -12.56 6.50 23.99 0.16 -12.41 16 15 C 0.18 5.58 11.14 84.48 0.94 6.53 16 16 N -0.56 -15.32 9.70 -200.64 -1.95 -17.26 16 17 C 0.33 7.68 8.05 179.43 1.44 9.12 16 18 N -0.64 -10.01 5.69 -330.72 -1.88 -11.89 16 19 C 0.07 0.88 6.53 45.00 0.29 1.17 16 20 C -0.18 -1.64 10.46 30.62 0.32 -1.31 16 21 C -0.17 -1.40 10.46 30.62 0.32 -1.08 16 22 S 0.17 4.31 22.33 -56.49 -1.26 3.05 16 23 C 0.45 20.03 2.79 71.98 0.20 20.23 16 24 F -0.18 -8.30 16.86 44.97 0.76 -7.55 16 25 F -0.19 -8.41 15.83 44.97 0.71 -7.69 16 26 F -0.19 -8.05 16.97 44.97 0.76 -7.29 16 27 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.40 15.99 7.76 -92.71 -0.72 15.28 16 29 H 0.19 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.43 4.45 8.95 -92.70 -0.83 3.62 16 31 H 0.13 2.15 7.57 -2.39 -0.02 2.13 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -64.07 332.81 2.29 -61.78 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -0.44 Total: 17.33 kcal Atomic # 6 Polarization: 28.08 SS G_CDS: 5.05 Total: 33.13 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -5.03 Total: -109.98 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.07 Total: -26.18 kcal Atomic # 9 Polarization: -24.76 SS G_CDS: 2.23 Total: -22.53 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.81 Total: 43.39 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.26 Total: 3.05 kcal Total: -64.07 2.29 -61.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.821 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds