Wall clock time and date at job start Tue Mar 31 2020 19:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34820 * 116.99745 * 2 1 4 4 O 1.21539 * 120.00428 * 0.02562 * 3 2 1 5 5 C 1.47143 * 119.99900 * 180.02562 * 3 2 1 6 6 C 1.36634 * 125.81561 * 180.02562 * 5 3 2 7 7 C 1.40042 * 106.91801 * 179.97438 * 6 5 3 8 8 C 1.50698 * 126.53066 * 180.02562 * 7 6 5 9 9 C 1.36580 * 106.93447 * 0.02562 * 7 6 5 10 10 C 1.47320 * 125.79438 * 180.02562 * 9 7 6 11 11 O 1.21606 * 120.00332 * 359.97438 * 10 9 7 12 12 N 1.34781 * 119.99850 * 180.02562 * 10 9 7 13 13 C 1.46497 * 120.00108 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47370 * 324.99890 * 13 12 10 15 15 C 1.50694 * 109.47344 * 204.99510 * 13 12 10 16 16 H 1.07998 * 120.00095 * 274.94051 * 15 13 12 17 17 C 1.37880 * 119.99945 * 94.93964 * 15 13 12 18 18 N 1.31518 * 120.00197 * 184.87906 * 17 15 13 19 19 Si 1.86796 * 120.00058 * 4.88146 * 17 15 13 20 20 H 1.48493 * 109.47352 * 84.80981 * 19 17 15 21 21 H 1.48507 * 109.47253 * 204.81009 * 19 17 15 22 22 H 1.48502 * 109.47328 * 324.81014 * 19 17 15 23 23 C 1.53004 * 109.47170 * 84.99295 * 13 12 10 24 24 F 1.39900 * 109.46910 * 174.94034 * 23 13 12 25 25 F 1.39901 * 109.47073 * 54.93859 * 23 13 12 26 26 F 1.39899 * 109.47472 * 294.93782 * 23 13 12 27 27 O 1.34533 * 108.40340 * 0.26180 * 9 7 6 28 28 H 1.09001 * 109.46998 * 299.99682 * 1 2 3 29 29 H 1.08998 * 109.47041 * 59.99424 * 1 2 3 30 30 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.08004 * 126.53709 * 0.02562 * 6 5 3 32 32 H 1.09004 * 109.46677 * 269.97561 * 8 7 6 33 33 H 1.09003 * 109.47308 * 29.97559 * 8 7 6 34 34 H 1.08994 * 109.47521 * 149.97639 * 8 7 6 35 35 H 0.96996 * 119.99930 * 359.97438 * 12 10 9 36 36 H 0.96991 * 120.00137 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2206 0.0005 5 6 3.5335 1.2783 -0.0006 6 6 4.2739 2.4266 -0.0001 7 6 5.6208 2.0431 -0.0004 8 6 6.8152 2.9620 0.0005 9 6 5.6455 0.6775 -0.0015 10 6 6.8559 -0.1623 -0.0016 11 8 7.9559 0.3562 -0.0010 12 7 6.7441 -1.5055 -0.0033 13 6 7.9477 -2.3407 -0.0039 14 1 8.7264 -1.8555 -0.5925 15 6 7.6265 -3.6843 -0.6060 16 1 7.2104 -4.4669 0.0109 17 6 7.8638 -3.9144 -1.9446 18 7 7.4956 -5.0522 -2.4917 19 14 8.7085 -2.6099 -2.9811 20 1 10.1807 -2.7418 -2.8394 21 1 8.3304 -2.7885 -4.4061 22 1 8.2857 -1.2624 -2.5220 23 6 8.4380 -2.5298 1.4330 24 9 9.5174 -3.4198 1.4441 25 9 7.3998 -3.0461 2.2158 26 9 8.8452 -1.2966 1.9530 27 8 4.3769 0.2297 -0.0078 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8931 3.4373 0.0011 32 1 7.1034 3.1840 -1.0270 33 1 6.5603 3.8887 0.5147 34 1 7.6457 2.4780 0.5143 35 1 5.8668 -1.9191 -0.0041 36 1 7.6622 -5.2139 -3.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:52 Heat of formation + Delta-G solvation = -261.954557 kcal Electronic energy + Delta-G solvation = -29659.957214 eV Core-core repulsion = 24696.328597 eV Total energy + Delta-G solvation = -4963.628617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.14238 -46.66713 -46.61635 -42.95343 -40.44994 -39.05825 -36.82087 -35.23870 -34.13131 -32.70642 -31.27041 -29.47313 -28.31767 -27.27312 -25.06506 -24.65869 -22.09049 -21.30519 -20.80805 -20.02218 -18.64500 -18.06709 -17.62484 -17.48527 -17.13799 -17.08893 -16.80806 -16.55809 -16.09585 -15.43665 -14.70865 -14.22941 -14.09128 -13.81911 -13.60074 -13.54041 -13.47888 -13.39336 -13.11862 -13.08541 -13.05381 -12.82825 -12.78116 -12.73577 -12.62948 -12.44255 -12.00668 -11.91550 -11.24721 -11.15475 -11.11773 -10.84382 -10.24992 -9.97902 -9.92093 -9.84118 -9.07063 -8.92700 -8.57890 -6.62224 -4.78593 0.40711 1.68700 1.98136 2.61507 2.67983 3.04422 3.13666 3.20561 3.28570 3.42955 3.84337 4.01713 4.43301 4.53568 4.70856 4.81191 4.83491 4.92561 5.07332 5.08965 5.14516 5.26829 5.29832 5.34650 5.57819 5.72157 5.76469 5.91081 5.99284 6.12278 6.27005 6.57537 6.77526 6.87033 7.34027 7.72102 8.05763 8.41188 8.47316 8.92439 10.45811 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.004172 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.951999 B = 6710.415485 C = 7199.404487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.556 3.444 4 O -0.487 6.487 5 C -0.045 4.045 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.092 4.092 9 C -0.014 4.014 10 C 0.582 3.418 11 O -0.511 6.511 12 N -0.695 5.695 13 C 0.200 3.800 14 H 0.094 0.906 15 C -0.537 4.537 16 H 0.096 0.904 17 C 0.101 3.899 18 N -0.853 5.853 19 Si 0.866 3.134 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.255 1.255 23 C 0.439 3.561 24 F -0.179 7.179 25 F -0.190 7.190 26 F -0.195 7.195 27 O -0.134 6.134 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.170 0.830 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 11.169 3.521 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.258 6.258 3 C 0.400 3.600 4 O -0.376 6.376 5 C -0.097 4.097 6 C -0.132 4.132 7 C -0.122 4.122 8 C -0.148 4.148 9 C -0.069 4.069 10 C 0.366 3.634 11 O -0.389 6.389 12 N -0.346 5.346 13 C 0.098 3.902 14 H 0.112 0.888 15 C -0.574 4.574 16 H 0.114 0.886 17 C -0.110 4.110 18 N -0.485 5.485 19 Si 0.691 3.309 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.178 1.178 23 C 0.383 3.617 24 F -0.160 7.160 25 F -0.172 7.172 26 F -0.177 7.177 27 O -0.029 6.029 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.187 0.813 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.979 11.314 3.372 14.249 hybrid contribution -0.317 0.449 -0.389 0.673 sum -8.295 11.763 2.983 14.699 Atomic orbital electron populations 1.23397 0.75115 1.04413 1.02783 1.86694 1.24130 1.31401 1.83622 1.19288 0.85330 0.82238 0.73105 1.90921 1.64271 1.35978 1.46437 1.20835 0.87995 0.86370 1.14469 1.21821 0.91570 0.98931 1.00908 1.20603 0.95808 0.92658 1.03151 1.20427 0.94294 0.96918 1.03172 1.22931 0.82677 0.94165 1.07135 1.17116 0.85353 0.82904 0.78028 1.90813 1.24151 1.73149 1.50764 1.47650 1.12131 1.04028 1.70781 1.20141 0.87785 0.94682 0.87595 0.88812 1.20721 1.46281 0.94287 0.96104 0.88581 1.25014 0.93178 0.95501 0.97299 1.69846 1.41567 1.23454 1.13627 0.86954 0.81223 0.82759 0.79977 1.18762 1.20310 1.17849 1.21608 0.75402 0.73012 0.91656 1.93119 1.56678 1.69248 1.96979 1.93084 1.58888 1.87351 1.77879 1.93146 1.91067 1.44183 1.89299 1.84180 1.14982 1.34138 1.69556 0.91499 0.91490 0.87414 0.81273 0.90664 0.91372 0.88911 0.75529 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.34 -4.28 10.58 -42.24 -0.45 -4.72 16 3 C 0.56 7.49 7.95 34.34 0.27 7.77 16 4 O -0.49 -6.90 16.66 -19.29 -0.32 -7.22 16 5 C -0.04 -0.64 7.19 -36.55 -0.26 -0.90 16 6 C -0.11 -1.44 10.55 -39.49 -0.42 -1.86 16 7 C -0.12 -1.72 6.18 -104.55 -0.65 -2.37 16 8 C -0.09 -1.14 9.81 36.00 0.35 -0.79 16 9 C -0.01 -0.23 7.14 -36.49 -0.26 -0.49 16 10 C 0.58 11.31 7.46 -12.57 -0.09 11.22 16 11 O -0.51 -10.71 13.28 5.27 0.07 -10.64 16 12 N -0.69 -14.02 4.90 -56.05 -0.27 -14.29 16 13 C 0.20 4.48 1.71 -69.08 -0.12 4.36 16 14 H 0.09 2.18 4.73 -51.93 -0.25 1.93 16 15 C -0.54 -13.32 8.52 -34.44 -0.29 -13.61 16 16 H 0.10 2.58 8.00 -52.49 -0.42 2.16 16 17 C 0.10 2.57 5.47 -17.82 -0.10 2.47 16 18 N -0.85 -22.85 13.96 55.43 0.77 -22.08 16 19 Si 0.87 19.46 26.99 -169.99 -4.59 14.87 16 20 H -0.26 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.25 -5.74 6.82 56.52 0.39 -5.35 16 23 C 0.44 9.47 2.83 37.16 0.11 9.58 16 24 F -0.18 -3.92 16.89 2.25 0.04 -3.88 16 25 F -0.19 -4.01 16.93 2.25 0.04 -3.97 16 26 F -0.20 -4.12 15.83 2.25 0.04 -4.09 16 27 O -0.13 -2.14 10.41 4.12 0.04 -2.10 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.17 1.72 8.06 -52.48 -0.42 1.29 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.33 6.42 -51.93 -0.33 1.00 16 35 H 0.41 7.70 8.35 -40.82 -0.34 7.35 16 36 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -28.50 337.41 -2.96 -31.47 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.03 Total: 4.83 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: -0.39 Total: 16.73 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.50 Total: -36.37 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.66 Total: -24.68 kcal Atomic # 9 Polarization: -12.05 SS G_CDS: 0.11 Total: -11.94 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.59 Total: 14.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.50 -2.96 -31.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.488 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds