Wall clock time and date at job start Tue Mar 31 2020 19:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34820 * 116.99745 * 2 1 4 4 O 1.21539 * 120.00428 * 0.02562 * 3 2 1 5 5 C 1.47143 * 119.99900 * 180.02562 * 3 2 1 6 6 C 1.36634 * 125.81561 * 180.02562 * 5 3 2 7 7 C 1.40042 * 106.91801 * 179.97438 * 6 5 3 8 8 C 1.50698 * 126.53066 * 180.02562 * 7 6 5 9 9 C 1.36580 * 106.93447 * 0.02562 * 7 6 5 10 10 C 1.47320 * 125.79438 * 180.02562 * 9 7 6 11 11 O 1.21606 * 120.00332 * 359.97438 * 10 9 7 12 12 N 1.34781 * 119.99850 * 180.02562 * 10 9 7 13 13 C 1.46497 * 120.00108 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47370 * 324.99890 * 13 12 10 15 15 C 1.50694 * 109.47344 * 204.99510 * 13 12 10 16 16 H 1.07998 * 120.00095 * 274.94051 * 15 13 12 17 17 C 1.37880 * 119.99945 * 94.93964 * 15 13 12 18 18 N 1.31518 * 120.00197 * 184.87906 * 17 15 13 19 19 Si 1.86796 * 120.00058 * 4.88146 * 17 15 13 20 20 H 1.48493 * 109.47352 * 84.80981 * 19 17 15 21 21 H 1.48507 * 109.47253 * 204.81009 * 19 17 15 22 22 H 1.48502 * 109.47328 * 324.81014 * 19 17 15 23 23 C 1.53004 * 109.47170 * 84.99295 * 13 12 10 24 24 F 1.39900 * 109.46910 * 174.94034 * 23 13 12 25 25 F 1.39901 * 109.47073 * 54.93859 * 23 13 12 26 26 F 1.39899 * 109.47472 * 294.93782 * 23 13 12 27 27 O 1.34533 * 108.40340 * 0.26180 * 9 7 6 28 28 H 1.09001 * 109.46998 * 299.99682 * 1 2 3 29 29 H 1.08998 * 109.47041 * 59.99424 * 1 2 3 30 30 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.08004 * 126.53709 * 0.02562 * 6 5 3 32 32 H 1.09004 * 109.46677 * 269.97561 * 8 7 6 33 33 H 1.09003 * 109.47308 * 29.97559 * 8 7 6 34 34 H 1.08994 * 109.47521 * 149.97639 * 8 7 6 35 35 H 0.96996 * 119.99930 * 359.97438 * 12 10 9 36 36 H 0.96991 * 120.00137 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2206 0.0005 5 6 3.5335 1.2783 -0.0006 6 6 4.2739 2.4266 -0.0001 7 6 5.6208 2.0431 -0.0004 8 6 6.8152 2.9620 0.0005 9 6 5.6455 0.6775 -0.0015 10 6 6.8559 -0.1623 -0.0016 11 8 7.9559 0.3562 -0.0010 12 7 6.7441 -1.5055 -0.0033 13 6 7.9477 -2.3407 -0.0039 14 1 8.7264 -1.8555 -0.5925 15 6 7.6265 -3.6843 -0.6060 16 1 7.2104 -4.4669 0.0109 17 6 7.8638 -3.9144 -1.9446 18 7 7.4956 -5.0522 -2.4917 19 14 8.7085 -2.6099 -2.9811 20 1 10.1807 -2.7418 -2.8394 21 1 8.3304 -2.7885 -4.4061 22 1 8.2857 -1.2624 -2.5220 23 6 8.4380 -2.5298 1.4330 24 9 9.5174 -3.4198 1.4441 25 9 7.3998 -3.0461 2.2158 26 9 8.8452 -1.2966 1.9530 27 8 4.3769 0.2297 -0.0078 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8931 3.4373 0.0011 32 1 7.1034 3.1840 -1.0270 33 1 6.5603 3.8887 0.5147 34 1 7.6457 2.4780 0.5143 35 1 5.8668 -1.9191 -0.0041 36 1 7.6622 -5.2139 -3.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:52 Heat of formation + Delta-G solvation = -279.833836 kcal Electronic energy + Delta-G solvation = -29660.732517 eV Core-core repulsion = 24696.328597 eV Total energy + Delta-G solvation = -4964.403920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.90158 -48.41081 -48.38483 -44.10854 -41.45428 -40.60966 -37.79929 -36.88714 -35.35890 -34.54717 -32.50085 -31.07165 -29.14485 -28.37777 -26.93956 -25.79897 -23.57878 -22.42748 -22.29824 -21.33827 -20.26389 -19.39045 -19.24936 -18.90664 -18.56423 -18.43157 -18.13591 -18.12769 -17.21016 -17.09873 -16.24324 -15.64346 -15.42153 -15.28313 -15.25280 -14.99393 -14.85014 -14.79177 -14.58543 -14.53311 -14.48127 -14.37749 -14.31458 -14.06928 -13.82190 -13.70197 -13.18309 -13.07005 -13.01909 -12.64625 -12.16132 -12.01896 -11.94937 -11.89306 -11.40852 -11.00610 -10.97512 -10.40988 -9.95654 -8.58087 -6.78180 -0.75932 0.53384 0.92412 1.25458 1.32286 1.39927 1.56376 1.57233 1.77389 1.95632 2.12983 2.15810 2.87459 3.16869 3.29369 3.36147 3.47288 3.53593 3.75308 4.05407 4.16734 4.23156 4.30314 4.32076 4.46848 4.69389 4.78313 4.81924 4.87243 4.96951 5.00305 5.13188 5.33285 5.48330 5.83219 6.33663 6.40204 6.44645 6.89228 6.95832 8.54008 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.004172 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.951999 B = 6710.415485 C = 7199.404487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.559 3.441 4 O -0.494 6.494 5 C -0.048 4.048 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.092 4.092 9 C -0.049 4.049 10 C 0.584 3.416 11 O -0.529 6.529 12 N -0.699 5.699 13 C 0.208 3.792 14 H 0.089 0.911 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.917 3.083 20 H -0.256 1.256 21 H -0.270 1.270 22 H -0.256 1.256 23 C 0.441 3.559 24 F -0.181 7.181 25 F -0.188 7.188 26 F -0.190 7.190 27 O -0.147 6.147 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.202 0.798 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 13.525 3.423 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.404 3.596 4 O -0.384 6.384 5 C -0.100 4.100 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.149 4.149 9 C -0.103 4.103 10 C 0.371 3.629 11 O -0.409 6.409 12 N -0.350 5.350 13 C 0.104 3.896 14 H 0.107 0.893 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.739 3.261 20 H -0.181 1.181 21 H -0.195 1.195 22 H -0.180 1.180 23 C 0.385 3.615 24 F -0.163 7.163 25 F -0.169 7.169 26 F -0.172 7.172 27 O -0.043 6.043 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.219 0.781 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.251 0.749 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.860 13.672 3.283 16.619 hybrid contribution -0.191 -0.235 -0.269 0.405 sum -9.051 13.437 3.014 16.479 Atomic orbital electron populations 1.23760 0.72812 1.06353 1.03573 1.86683 1.26468 1.30927 1.83180 1.19186 0.85026 0.82472 0.72935 1.90914 1.64308 1.36234 1.46959 1.21268 0.88475 0.86528 1.13700 1.22156 0.90393 0.99923 0.99430 1.20961 0.97221 0.91810 1.00551 1.20517 0.92770 0.97647 1.03925 1.22410 0.82261 0.94573 1.11035 1.17245 0.86238 0.82406 0.77059 1.90795 1.25247 1.73374 1.51436 1.47224 1.11503 1.04617 1.71691 1.19879 0.88239 0.93642 0.87798 0.89344 1.20646 1.46156 0.94851 0.95950 0.91457 1.25593 0.93590 0.96940 0.98234 1.69919 1.43391 1.25146 1.14264 0.86168 0.80592 0.80373 0.78933 1.18070 1.19513 1.18047 1.21473 0.75372 0.73123 0.91493 1.93112 1.56796 1.69383 1.96988 1.93087 1.58777 1.87331 1.77725 1.93154 1.91004 1.43827 1.89176 1.84141 1.14872 1.34991 1.70271 0.90646 0.90775 0.85028 0.78082 0.89715 0.88002 0.90947 0.74938 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.59 16 2 O -0.36 -8.37 10.58 -55.96 -0.59 -8.96 16 3 C 0.56 14.03 7.95 70.16 0.56 14.59 16 4 O -0.49 -12.85 16.66 19.71 0.33 -12.52 16 5 C -0.05 -1.27 7.19 24.23 0.17 -1.10 16 6 C -0.10 -2.25 10.55 22.33 0.24 -2.02 16 7 C -0.10 -2.72 6.18 -19.82 -0.12 -2.84 16 8 C -0.09 -2.04 9.81 71.24 0.70 -1.35 16 9 C -0.05 -1.58 7.14 24.27 0.17 -1.41 16 10 C 0.58 22.45 7.46 86.63 0.65 23.10 16 11 O -0.53 -21.87 13.28 -4.05 -0.05 -21.93 16 12 N -0.70 -28.28 4.90 -449.48 -2.20 -30.48 16 13 C 0.21 9.34 1.71 44.25 0.08 9.42 16 14 H 0.09 4.08 4.73 -2.38 -0.01 4.07 16 15 C -0.54 -27.24 8.52 25.60 0.22 -27.02 16 16 H 0.07 3.74 8.00 -2.91 -0.02 3.72 16 17 C 0.06 3.28 5.47 84.65 0.46 3.74 16 18 N -0.89 -48.69 13.96 21.45 0.30 -48.39 16 19 Si 0.92 40.01 26.99 68.60 1.85 41.86 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.26 -11.19 6.82 99.48 0.68 -10.51 16 23 C 0.44 19.03 2.83 71.98 0.20 19.23 16 24 F -0.18 -7.95 16.89 44.97 0.76 -7.19 16 25 F -0.19 -7.92 16.93 44.97 0.76 -7.16 16 26 F -0.19 -7.92 15.83 44.97 0.71 -7.21 16 27 O -0.15 -4.57 10.41 -7.20 -0.07 -4.65 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.95 6.42 -2.39 -0.02 1.94 16 35 H 0.41 15.82 8.35 -92.71 -0.77 15.05 16 36 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -60.95 337.41 6.69 -54.26 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.38 Total: 16.42 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: 4.52 Total: 35.93 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.91 Total: -78.87 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.39 Total: -48.05 kcal Atomic # 9 Polarization: -23.79 SS G_CDS: 2.23 Total: -21.56 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.85 Total: 41.86 kcal Total: -60.95 6.69 -54.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.572 kcal (2) G-P(sol) polarization free energy of solvation -60.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds