Wall clock time and date at job start Tue Mar 31 2020 19:30:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34817 * 116.99836 * 2 1
4 4 O 1.21530 * 120.00248 * 359.72908 * 3 2 1
5 5 C 1.47146 * 119.99932 * 180.02562 * 3 2 1
6 6 O 1.34571 * 125.80951 * 359.41703 * 5 3 2
7 7 C 1.34539 * 109.36771 * 179.82698 * 6 5 3
8 8 C 1.47324 * 125.79866 * 180.17505 * 7 6 5
9 9 O 1.21603 * 120.00410 * 180.30665 * 8 7 6
10 10 N 1.34786 * 119.99825 * 0.30524 * 8 7 6
11 11 C 1.46496 * 119.99731 * 180.02562 * 10 8 7
12 12 H 1.09007 * 109.47577 * 324.99931 * 11 10 8
13 13 C 1.50703 * 109.47011 * 205.00555 * 11 10 8
14 14 H 1.07997 * 119.99875 * 359.97438 * 13 11 10
15 15 C 1.37878 * 119.99756 * 180.02562 * 13 11 10
16 16 N 1.31511 * 120.00302 * 359.97438 * 15 13 11
17 17 Si 1.86803 * 119.99825 * 179.97438 * 15 13 11
18 18 H 1.48507 * 109.46966 * 59.99805 * 17 15 13
19 19 H 1.48502 * 109.47273 * 179.97438 * 17 15 13
20 20 H 1.48501 * 109.47333 * 300.00209 * 17 15 13
21 21 C 1.53001 * 109.47070 * 85.00112 * 11 10 8
22 22 F 1.39895 * 109.46917 * 60.00439 * 21 11 10
23 23 F 1.39904 * 109.47022 * 179.97438 * 21 11 10
24 24 F 1.39899 * 109.47269 * 299.99589 * 21 11 10
25 25 C 1.36575 * 108.40118 * 0.43720 * 7 6 5
26 26 C 1.36632 * 125.81354 * 179.72645 * 5 3 2
27 27 C 1.50696 * 126.54686 * 359.97438 * 26 5 3
28 28 H 1.09005 * 109.47203 * 59.99306 * 1 2 3
29 29 H 1.08993 * 109.47419 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47012 * 300.00059 * 1 2 3
31 31 H 0.96994 * 119.99817 * 0.02562 * 10 8 7
32 32 H 0.97000 * 120.00010 * 180.02562 * 16 15 13
33 33 H 1.08003 * 126.52870 * 179.69577 * 25 7 6
34 34 H 1.08998 * 109.47297 * 89.99291 * 27 26 5
35 35 H 1.08998 * 109.47314 * 209.99974 * 27 26 5
36 36 H 1.08998 * 109.46537 * 330.00223 * 27 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0640 1.2012 0.0000
4 8 1.4022 2.2205 -0.0050
5 6 3.5335 1.2783 -0.0006
6 8 4.3769 0.2297 0.0100
7 6 5.6456 0.6775 0.0019
8 6 6.8559 -0.1624 0.0055
9 8 7.9559 0.3560 0.0029
10 7 6.7440 -1.5056 0.0117
11 6 7.9476 -2.3408 0.0158
12 1 8.7263 -1.8591 -0.5757
13 6 7.6263 -3.6879 -0.5786
14 1 6.6256 -3.9006 -0.9245
15 6 8.6097 -4.6489 -0.6799
16 7 9.8282 -4.3900 -0.2583
17 14 8.2113 -6.3189 -1.4161
18 1 7.7356 -6.1438 -2.8120
19 1 9.4314 -7.1655 -1.4120
20 1 7.1504 -6.9748 -0.6103
21 6 8.4379 -2.5216 1.4538
22 9 7.4386 -3.1400 2.2129
23 9 9.5870 -3.3197 1.4579
24 9 8.7362 -1.2711 2.0056
25 6 5.6208 2.0430 -0.0044
26 6 4.2739 2.4266 -0.0059
27 6 3.7427 3.8368 -0.0128
28 1 -0.3634 0.5140 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 5.8667 -1.9192 0.0134
32 1 10.5201 -5.0660 -0.3299
33 1 6.4768 2.7015 -0.0069
34 1 3.6142 4.1817 1.0131
35 1 4.4475 4.4881 -0.5296
36 1 2.7819 3.8605 -0.5270
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000928800699.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:30:59
Heat of formation + Delta-G solvation = -238.463866 kcal
Electronic energy + Delta-G solvation = -29477.823988 eV
Core-core repulsion = 24515.214004 eV
Total energy + Delta-G solvation = -4962.609984 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.086 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-48.43960 -46.09452 -45.69679 -42.97566 -40.45708 -39.00586 -36.90108 -35.02227
-34.27940 -32.70833 -31.14635 -28.78237 -28.65743 -27.23568 -24.81530 -24.39779
-22.18477 -21.42836 -20.85969 -19.79283 -18.53983 -18.03428 -17.23260 -17.11929
-16.95077 -16.81856 -16.69456 -16.09262 -15.86493 -15.09660 -14.73128 -14.47682
-14.02998 -13.78167 -13.55248 -13.38295 -13.27614 -13.21136 -13.00829 -12.88203
-12.62430 -12.50187 -12.47418 -12.36079 -12.23217 -12.07073 -11.90122 -11.26512
-11.13330 -10.95164 -10.92497 -10.90401 -10.51830 -9.90514 -9.88315 -9.79631
-8.95498 -8.80289 -8.47511 -6.30994 -4.55871 0.39330 1.70039 1.97472
2.57998 2.67596 3.16929 3.21945 3.23391 3.34572 3.48926 4.15181
4.42955 4.45528 4.50930 4.72881 4.80979 4.85781 4.90008 5.17575
5.21984 5.29530 5.46371 5.47592 5.69989 5.72752 5.76310 5.77056
5.99113 6.08156 6.12699 6.50113 6.73587 6.91395 7.32235 7.36087
7.54635 8.02730 8.34084 8.52866 9.12144 10.60606
Molecular weight = 335.09amu
Principal moments of inertia in cm(-1)
A = 0.014921 B = 0.003529 C = 0.003106
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1876.128153 B = 7933.199934 C = 9011.261125
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.345 6.345
3 C 0.556 3.444
4 O -0.485 6.485
5 C -0.056 4.056
6 O -0.137 6.137
7 C 0.000 4.000
8 C 0.588 3.412
9 O -0.503 6.503
10 N -0.692 5.692
11 C 0.243 3.757
12 H 0.091 0.909
13 C -0.555 4.555
14 H 0.080 0.920
15 C 0.066 3.934
16 N -0.839 5.839
17 Si 0.917 3.083
18 H -0.272 1.272
19 H -0.283 1.283
20 H -0.272 1.272
21 C 0.417 3.583
22 F -0.207 7.207
23 F -0.134 7.134
24 F -0.218 7.218
25 C -0.150 4.150
26 C -0.079 4.079
27 C -0.096 4.096
28 H 0.066 0.934
29 H 0.106 0.894
30 H 0.066 0.934
31 H 0.407 0.593
32 H 0.270 0.730
33 H 0.173 0.827
34 H 0.079 0.921
35 H 0.075 0.925
36 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.689 9.347 0.025 16.576
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.261 6.261
3 C 0.401 3.599
4 O -0.374 6.374
5 C -0.107 4.107
6 O -0.032 6.032
7 C -0.056 4.056
8 C 0.371 3.629
9 O -0.379 6.379
10 N -0.341 5.341
11 C 0.138 3.862
12 H 0.108 0.892
13 C -0.591 4.591
14 H 0.098 0.902
15 C -0.143 4.143
16 N -0.471 5.471
17 Si 0.744 3.256
18 H -0.197 1.197
19 H -0.208 1.208
20 H -0.197 1.197
21 C 0.361 3.639
22 F -0.189 7.189
23 F -0.115 7.115
24 F -0.199 7.199
25 C -0.171 4.171
26 C -0.081 4.081
27 C -0.153 4.153
28 H 0.085 0.915
29 H 0.125 0.875
30 H 0.085 0.915
31 H 0.242 0.758
32 H 0.081 0.919
33 H 0.190 0.810
34 H 0.097 0.903
35 H 0.094 0.906
36 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -12.983 9.561 0.075 16.123
hybrid contribution -0.605 -1.037 0.052 1.202
sum -13.588 8.523 0.127 16.041
Atomic orbital electron populations
1.23379 0.75204 1.04314 1.02776 1.86684 1.24052 1.31553 1.83765
1.19253 0.85278 0.82189 0.73201 1.90884 1.64231 1.35783 1.46535
1.20656 0.87883 0.85969 1.16211 1.84168 1.15037 1.34158 1.69814
1.22981 0.82547 0.94541 1.05493 1.16780 0.85350 0.82483 0.78333
1.90891 1.24001 1.73052 1.49975 1.46085 1.11851 1.04607 1.71577
1.19904 0.85094 0.92912 0.88283 0.89154 1.20821 0.98210 0.95786
1.44305 0.90236 1.25073 0.94822 0.99843 0.94543 1.70375 1.01727
1.35145 1.39903 0.86230 0.78078 0.81707 0.79626 1.19700 1.20807
1.19728 1.23089 0.76765 0.72786 0.91298 1.93003 1.62738 1.83763
1.79377 1.93418 1.49566 1.72391 1.96131 1.93073 1.93787 1.44512
1.88576 1.21836 0.97263 0.93582 1.04393 1.20609 0.92162 0.95988
0.99387 1.20493 1.02169 0.89284 1.03334 0.91515 0.87532 0.91515
0.75821 0.91900 0.80961 0.90259 0.90627 0.89557
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.28 10.57 101.05 1.07 1.35 16
2 O -0.34 -4.10 10.58 -42.24 -0.45 -4.55 16
3 C 0.56 7.19 7.95 34.35 0.27 7.46 16
4 O -0.48 -6.40 14.51 -19.29 -0.28 -6.68 16
5 C -0.06 -0.77 7.19 -36.55 -0.26 -1.04 16
6 O -0.14 -2.11 10.41 4.11 0.04 -2.07 16
7 C 0.00 -0.01 7.14 -36.49 -0.26 -0.27 16
8 C 0.59 11.51 7.34 -12.56 -0.09 11.42 16
9 O -0.50 -11.17 15.43 5.28 0.08 -11.09 16
10 N -0.69 -14.09 4.98 -56.04 -0.28 -14.37 16
11 C 0.24 5.86 2.21 -69.08 -0.15 5.70 16
12 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16
13 C -0.55 -13.76 8.47 -34.44 -0.29 -14.05 16
14 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16
15 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16
16 N -0.84 -22.34 9.50 55.43 0.53 -21.81 16
17 Si 0.92 19.64 29.54 -169.99 -5.02 14.62 16
18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
21 C 0.42 10.42 2.81 37.16 0.10 10.52 16
22 F -0.21 -5.02 16.94 2.25 0.04 -4.98 16
23 F -0.13 -3.61 12.91 2.25 0.03 -3.58 16
24 F -0.22 -5.35 15.68 2.25 0.04 -5.32 16
25 C -0.15 -2.09 10.55 -39.51 -0.42 -2.51 16
26 C -0.08 -1.01 6.18 -104.53 -0.65 -1.65 16
27 C -0.10 -0.93 9.81 36.00 0.35 -0.58 16
28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.41 7.42 8.30 -40.82 -0.34 7.08 16
32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16
33 H 0.17 2.12 8.06 -52.48 -0.42 1.69 16
34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
36 H 0.09 0.87 6.43 -51.93 -0.33 0.54 16
LS Contribution 334.30 15.07 5.04 5.04
Total: -1.00 -29.43 334.30 -3.79 -33.23
By element:
Atomic # 1 Polarization: 6.75 SS G_CDS: -3.14 Total: 3.60 kcal
Atomic # 6 Polarization: 18.37 SS G_CDS: -0.42 Total: 17.95 kcal
Atomic # 7 Polarization: -36.43 SS G_CDS: 0.25 Total: -36.18 kcal
Atomic # 8 Polarization: -23.78 SS G_CDS: -0.60 Total: -24.38 kcal
Atomic # 9 Polarization: -13.98 SS G_CDS: 0.10 Total: -13.88 kcal
Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -29.43 -3.79 -33.23 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928800699.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -205.238 kcal
(2) G-P(sol) polarization free energy of solvation -29.431 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.795 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) -238.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds