Wall clock time and date at job start Tue Mar 31 2020 19:30:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34817 * 116.99836 * 2 1
4 4 O 1.21530 * 120.00248 * 359.72908 * 3 2 1
5 5 C 1.47146 * 119.99932 * 180.02562 * 3 2 1
6 6 O 1.34571 * 125.80951 * 359.41703 * 5 3 2
7 7 C 1.34539 * 109.36771 * 179.82698 * 6 5 3
8 8 C 1.47324 * 125.79866 * 180.17505 * 7 6 5
9 9 O 1.21603 * 120.00410 * 180.30665 * 8 7 6
10 10 N 1.34786 * 119.99825 * 0.30524 * 8 7 6
11 11 C 1.46496 * 119.99731 * 180.02562 * 10 8 7
12 12 H 1.09007 * 109.47577 * 324.99931 * 11 10 8
13 13 C 1.50703 * 109.47011 * 205.00555 * 11 10 8
14 14 H 1.07997 * 119.99875 * 359.97438 * 13 11 10
15 15 C 1.37878 * 119.99756 * 180.02562 * 13 11 10
16 16 N 1.31511 * 120.00302 * 359.97438 * 15 13 11
17 17 Si 1.86803 * 119.99825 * 179.97438 * 15 13 11
18 18 H 1.48507 * 109.46966 * 59.99805 * 17 15 13
19 19 H 1.48502 * 109.47273 * 179.97438 * 17 15 13
20 20 H 1.48501 * 109.47333 * 300.00209 * 17 15 13
21 21 C 1.53001 * 109.47070 * 85.00112 * 11 10 8
22 22 F 1.39895 * 109.46917 * 60.00439 * 21 11 10
23 23 F 1.39904 * 109.47022 * 179.97438 * 21 11 10
24 24 F 1.39899 * 109.47269 * 299.99589 * 21 11 10
25 25 C 1.36575 * 108.40118 * 0.43720 * 7 6 5
26 26 C 1.36632 * 125.81354 * 179.72645 * 5 3 2
27 27 C 1.50696 * 126.54686 * 359.97438 * 26 5 3
28 28 H 1.09005 * 109.47203 * 59.99306 * 1 2 3
29 29 H 1.08993 * 109.47419 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47012 * 300.00059 * 1 2 3
31 31 H 0.96994 * 119.99817 * 0.02562 * 10 8 7
32 32 H 0.97000 * 120.00010 * 180.02562 * 16 15 13
33 33 H 1.08003 * 126.52870 * 179.69577 * 25 7 6
34 34 H 1.08998 * 109.47297 * 89.99291 * 27 26 5
35 35 H 1.08998 * 109.47314 * 209.99974 * 27 26 5
36 36 H 1.08998 * 109.46537 * 330.00223 * 27 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0640 1.2012 0.0000
4 8 1.4022 2.2205 -0.0050
5 6 3.5335 1.2783 -0.0006
6 8 4.3769 0.2297 0.0100
7 6 5.6456 0.6775 0.0019
8 6 6.8559 -0.1624 0.0055
9 8 7.9559 0.3560 0.0029
10 7 6.7440 -1.5056 0.0117
11 6 7.9476 -2.3408 0.0158
12 1 8.7263 -1.8591 -0.5757
13 6 7.6263 -3.6879 -0.5786
14 1 6.6256 -3.9006 -0.9245
15 6 8.6097 -4.6489 -0.6799
16 7 9.8282 -4.3900 -0.2583
17 14 8.2113 -6.3189 -1.4161
18 1 7.7356 -6.1438 -2.8120
19 1 9.4314 -7.1655 -1.4120
20 1 7.1504 -6.9748 -0.6103
21 6 8.4379 -2.5216 1.4538
22 9 7.4386 -3.1400 2.2129
23 9 9.5870 -3.3197 1.4579
24 9 8.7362 -1.2711 2.0056
25 6 5.6208 2.0430 -0.0044
26 6 4.2739 2.4266 -0.0059
27 6 3.7427 3.8368 -0.0128
28 1 -0.3634 0.5140 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 5.8667 -1.9192 0.0134
32 1 10.5201 -5.0660 -0.3299
33 1 6.4768 2.7015 -0.0069
34 1 3.6142 4.1817 1.0131
35 1 4.4475 4.4881 -0.5296
36 1 2.7819 3.8605 -0.5270
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000928800699.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:30:58
Heat of formation + Delta-G solvation = -256.626981 kcal
Electronic energy + Delta-G solvation = -29478.611600 eV
Core-core repulsion = 24515.214004 eV
Total energy + Delta-G solvation = -4963.397596 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.086 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-50.45635 -48.09316 -47.75632 -44.11174 -41.41775 -40.59846 -37.82765 -36.74617
-35.38883 -34.53462 -32.36549 -30.45057 -29.50868 -28.09299 -26.67131 -25.79782
-23.54735 -22.79662 -22.23710 -21.18633 -19.71028 -19.42548 -18.93137 -18.73855
-18.61662 -18.15428 -18.09750 -17.64961 -17.13324 -16.89037 -16.34499 -15.66885
-15.45915 -15.08903 -15.00883 -14.74193 -14.55340 -14.49218 -14.37019 -14.33703
-14.32296 -14.06231 -14.04111 -13.92940 -13.82680 -13.30485 -13.10971 -12.97304
-12.83333 -12.62957 -12.27131 -11.92026 -11.84689 -11.66077 -11.51606 -10.96224
-10.70652 -10.34783 -9.99226 -8.23590 -6.54900 -0.75455 0.55100 0.92878
1.47488 1.49700 1.56057 1.56833 1.60868 1.86676 2.04047 2.37202
2.48658 2.91668 3.31433 3.45709 3.64745 3.73679 3.79690 4.05709
4.12869 4.17177 4.25415 4.34283 4.45786 4.70959 4.76217 4.79551
4.83145 4.91277 5.05156 5.13095 5.26565 5.41500 5.51693 5.60681
6.36574 6.42564 6.49016 6.89351 7.17653 8.68884
Molecular weight = 335.09amu
Principal moments of inertia in cm(-1)
A = 0.014921 B = 0.003529 C = 0.003106
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1876.128153 B = 7933.199934 C = 9011.261125
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.357 6.357
3 C 0.558 3.442
4 O -0.488 6.488
5 C -0.060 4.060
6 O -0.146 6.146
7 C -0.029 4.029
8 C 0.591 3.409
9 O -0.536 6.536
10 N -0.691 5.691
11 C 0.250 3.750
12 H 0.061 0.939
13 C -0.565 4.565
14 H 0.091 0.909
15 C 0.019 3.981
16 N -0.871 5.871
17 Si 0.982 3.018
18 H -0.263 1.263
19 H -0.283 1.283
20 H -0.267 1.267
21 C 0.414 3.586
22 F -0.203 7.203
23 F -0.147 7.147
24 F -0.217 7.217
25 C -0.130 4.130
26 C -0.074 4.074
27 C -0.094 4.094
28 H 0.074 0.926
29 H 0.131 0.869
30 H 0.073 0.927
31 H 0.416 0.584
32 H 0.271 0.729
33 H 0.189 0.811
34 H 0.092 0.908
35 H 0.097 0.903
36 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.780 9.781 -0.358 18.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.273 6.273
3 C 0.403 3.597
4 O -0.378 6.378
5 C -0.112 4.112
6 O -0.042 6.042
7 C -0.083 4.083
8 C 0.376 3.624
9 O -0.414 6.414
10 N -0.341 5.341
11 C 0.143 3.857
12 H 0.079 0.921
13 C -0.601 4.601
14 H 0.109 0.891
15 C -0.187 4.187
16 N -0.504 5.504
17 Si 0.806 3.194
18 H -0.187 1.187
19 H -0.208 1.208
20 H -0.192 1.192
21 C 0.358 3.642
22 F -0.185 7.185
23 F -0.128 7.128
24 F -0.199 7.199
25 C -0.150 4.150
26 C -0.076 4.076
27 C -0.150 4.150
28 H 0.092 0.908
29 H 0.149 0.851
30 H 0.092 0.908
31 H 0.253 0.747
32 H 0.081 0.919
33 H 0.206 0.794
34 H 0.110 0.890
35 H 0.116 0.884
36 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -15.119 10.004 -0.308 18.132
hybrid contribution -0.076 -1.086 0.197 1.106
sum -15.195 8.919 -0.111 17.619
Atomic orbital electron populations
1.23741 0.72878 1.06292 1.03520 1.86670 1.26380 1.30959 1.83340
1.19128 0.84875 0.82540 0.73196 1.90880 1.64152 1.35963 1.46815
1.21124 0.88513 0.86072 1.15452 1.84125 1.14753 1.34875 1.70404
1.22319 0.82060 0.94669 1.09274 1.17051 0.86178 0.82144 0.77009
1.90861 1.25708 1.73555 1.51325 1.45927 1.11131 1.04934 1.72081
1.19537 0.85719 0.93196 0.87217 0.92085 1.21147 0.98795 0.96018
1.44168 0.89078 1.25944 0.94585 1.03394 0.94730 1.70495 1.02648
1.36223 1.41083 0.85220 0.77801 0.77246 0.79152 1.18718 1.20808
1.19177 1.23240 0.76485 0.72626 0.91892 1.92998 1.62445 1.83708
1.79311 1.93391 1.50356 1.72808 1.96238 1.93067 1.93802 1.44426
1.88618 1.22124 0.98451 0.92656 1.01795 1.20961 0.91294 0.97184
0.98205 1.20604 1.02421 0.87569 1.04415 0.90751 0.85051 0.90809
0.74685 0.91948 0.79400 0.88956 0.88441 0.89811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 10.57 113.37 1.20 1.56 16
2 O -0.36 -7.92 10.58 -55.93 -0.59 -8.52 16
3 C 0.56 13.51 7.95 70.16 0.56 14.07 16
4 O -0.49 -11.90 14.51 19.74 0.29 -11.61 16
5 C -0.06 -1.59 7.19 24.23 0.17 -1.41 16
6 O -0.15 -4.40 10.41 -7.21 -0.08 -4.47 16
7 C -0.03 -0.93 7.14 24.27 0.17 -0.75 16
8 C 0.59 23.46 7.34 86.63 0.64 24.10 16
9 O -0.54 -24.33 15.43 -4.04 -0.06 -24.39 16
10 N -0.69 -28.53 4.98 -449.46 -2.24 -30.77 16
11 C 0.25 12.29 2.21 44.25 0.10 12.39 16
12 H 0.06 3.36 7.58 -2.38 -0.02 3.35 16
13 C -0.56 -28.08 8.47 25.60 0.22 -27.86 16
14 H 0.09 4.21 7.74 -2.91 -0.02 4.19 16
15 C 0.02 0.98 5.20 84.66 0.44 1.42 16
16 N -0.87 -47.05 9.50 21.45 0.20 -46.84 16
17 Si 0.98 39.80 29.54 68.60 2.03 41.83 16
18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16
19 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16
20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16
21 C 0.41 21.05 2.81 71.98 0.20 21.25 16
22 F -0.20 -9.88 16.94 44.97 0.76 -9.11 16
23 F -0.15 -8.08 12.91 44.97 0.58 -7.50 16
24 F -0.22 -10.89 15.68 44.97 0.70 -10.18 16
25 C -0.13 -3.42 10.55 22.32 0.24 -3.18 16
26 C -0.07 -1.73 6.18 -19.80 -0.12 -1.85 16
27 C -0.09 -1.54 9.81 71.23 0.70 -0.84 16
28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16
29 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
31 H 0.42 15.27 8.30 -92.71 -0.77 14.50 16
32 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16
33 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16
34 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16
35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
36 H 0.08 1.47 6.43 -2.39 -0.02 1.45 16
Total: -1.00 -63.12 334.30 6.51 -56.61
By element:
Atomic # 1 Polarization: 15.67 SS G_CDS: 0.40 Total: 16.08 kcal
Atomic # 6 Polarization: 34.37 SS G_CDS: 4.51 Total: 38.88 kcal
Atomic # 7 Polarization: -75.57 SS G_CDS: -2.04 Total: -77.61 kcal
Atomic # 8 Polarization: -48.55 SS G_CDS: -0.44 Total: -48.99 kcal
Atomic # 9 Polarization: -28.84 SS G_CDS: 2.05 Total: -26.79 kcal
Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal
Total: -63.12 6.51 -56.61 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928800699.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -200.019 kcal
(2) G-P(sol) polarization free energy of solvation -63.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.134 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) -256.627 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds