Wall clock time and date at job start Tue Mar 31 2020 19:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34820 * 117.00536 * 2 1 4 4 O 1.21533 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.47134 * 120.00048 * 179.97438 * 3 2 1 6 6 O 1.34572 * 125.81769 * 0.33774 * 5 3 2 7 7 C 1.34535 * 109.37280 * 180.15036 * 6 5 3 8 8 C 1.47325 * 125.79934 * 179.83030 * 7 6 5 9 9 O 1.21606 * 120.00077 * 179.68881 * 8 7 6 10 10 N 1.34777 * 119.99862 * 359.68468 * 8 7 6 11 11 C 1.46500 * 119.99995 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46596 * 35.00583 * 11 10 8 13 13 C 1.50696 * 109.47188 * 155.00083 * 11 10 8 14 14 H 1.08003 * 120.00087 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00316 * 179.97438 * 13 11 10 16 16 N 1.31515 * 119.99571 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00268 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46848 * 60.00333 * 17 15 13 19 19 H 1.48500 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47295 * 300.00839 * 17 15 13 21 21 C 1.52997 * 109.47473 * 275.00486 * 11 10 8 22 22 F 1.39905 * 109.47157 * 59.99740 * 21 11 10 23 23 F 1.39900 * 109.47010 * 300.00131 * 21 11 10 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 11 10 25 25 C 1.36579 * 108.40247 * 359.56281 * 7 6 5 26 26 C 1.36644 * 125.81252 * 180.02562 * 5 3 2 27 27 C 1.50702 * 126.53963 * 0.06046 * 26 5 3 28 28 H 1.09000 * 109.47678 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47016 * 299.99968 * 1 2 3 30 30 H 1.09000 * 109.47535 * 59.99438 * 1 2 3 31 31 H 0.96995 * 120.00034 * 0.02562 * 10 8 7 32 32 H 0.97003 * 119.99476 * 179.97438 * 16 15 13 33 33 H 1.07995 * 126.52989 * 180.24488 * 25 7 6 34 34 H 1.09002 * 109.47135 * 269.97991 * 27 26 5 35 35 H 1.08998 * 109.46966 * 29.97837 * 27 26 5 36 36 H 1.08996 * 109.47080 * 149.98597 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4023 2.2205 0.0005 5 6 3.5335 1.2781 0.0006 6 8 4.3769 0.2295 -0.0053 7 6 5.6456 0.6772 0.0007 8 6 6.8559 -0.1627 0.0006 9 8 7.9559 0.3558 0.0007 10 7 6.7440 -1.5059 0.0006 11 6 7.9475 -2.3412 0.0012 12 1 8.7257 -1.8567 0.5910 13 6 7.6258 -3.6854 0.6015 14 1 6.6247 -3.8966 0.9476 15 6 8.6090 -4.6462 0.7079 16 7 9.8278 -4.3891 0.2860 17 14 8.2099 -6.3127 1.4514 18 1 7.1496 -6.9722 0.6476 19 1 9.4299 -7.1594 1.4521 20 1 7.7330 -6.1312 2.8460 21 6 8.4389 -2.5287 -1.4356 22 9 8.7377 -1.2807 -1.9929 23 9 7.4401 -3.1503 -2.1926 24 9 9.5886 -3.3258 -1.4350 25 6 5.6209 2.0428 0.0007 26 6 4.2740 2.4264 0.0011 27 6 3.7427 3.8367 0.0025 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 5.8666 -1.9194 0.0003 32 1 10.5196 -5.0649 0.3612 33 1 6.4769 2.7012 0.0011 34 1 3.6144 4.1777 -1.0248 35 1 2.7819 3.8624 0.5166 36 1 4.4476 4.4900 0.5168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:02 Heat of formation + Delta-G solvation = -238.484723 kcal Electronic energy + Delta-G solvation = -29477.667964 eV Core-core repulsion = 24515.057076 eV Total energy + Delta-G solvation = -4962.610888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.43925 -46.09299 -45.69812 -42.97545 -40.45663 -39.00591 -36.90067 -35.02251 -34.27891 -32.70826 -31.14646 -28.78286 -28.65754 -27.23546 -24.81530 -24.39795 -22.18460 -21.42870 -20.85982 -19.79300 -18.53996 -18.03455 -17.23240 -17.11937 -16.95113 -16.81809 -16.69448 -16.09264 -15.86479 -15.09672 -14.73112 -14.47692 -14.02940 -13.78182 -13.55168 -13.38357 -13.27611 -13.21162 -13.00782 -12.88185 -12.62438 -12.50140 -12.47385 -12.36034 -12.23200 -12.07143 -11.90150 -11.26568 -11.13266 -10.95187 -10.92507 -10.90414 -10.51824 -9.90504 -9.88310 -9.79652 -8.95477 -8.80323 -8.47544 -6.31046 -4.55898 0.39288 1.70037 1.97483 2.58014 2.67561 3.16919 3.21923 3.23386 3.34580 3.48899 4.15168 4.42965 4.45530 4.50940 4.72857 4.80983 4.85755 4.90029 5.17561 5.21983 5.29537 5.46359 5.47584 5.70001 5.72760 5.76282 5.77084 5.99148 6.08104 6.12687 6.50119 6.73584 6.91362 7.32221 7.36085 7.54631 8.02725 8.34056 8.52838 9.12104 10.60557 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003529 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.313783 B = 7933.422758 C = 9011.215566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.556 3.444 4 O -0.485 6.485 5 C -0.056 4.056 6 O -0.137 6.137 7 C 0.000 4.000 8 C 0.588 3.412 9 O -0.503 6.503 10 N -0.692 5.692 11 C 0.243 3.757 12 H 0.091 0.909 13 C -0.555 4.555 14 H 0.080 0.920 15 C 0.066 3.934 16 N -0.839 5.839 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.417 3.583 22 F -0.218 7.218 23 F -0.207 7.207 24 F -0.134 7.134 25 C -0.150 4.150 26 C -0.079 4.079 27 C -0.096 4.096 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.407 0.593 32 H 0.270 0.730 33 H 0.173 0.827 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.687 9.344 -0.070 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.401 3.599 4 O -0.374 6.374 5 C -0.107 4.107 6 O -0.032 6.032 7 C -0.056 4.056 8 C 0.371 3.629 9 O -0.379 6.379 10 N -0.341 5.341 11 C 0.138 3.862 12 H 0.108 0.892 13 C -0.591 4.591 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.472 5.472 17 Si 0.744 3.256 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C 0.361 3.639 22 F -0.200 7.200 23 F -0.189 7.189 24 F -0.115 7.115 25 C -0.171 4.171 26 C -0.081 4.081 27 C -0.153 4.153 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.242 0.758 32 H 0.081 0.919 33 H 0.190 0.810 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.981 9.558 -0.121 16.121 hybrid contribution -0.606 -1.037 -0.046 1.202 sum -13.587 8.520 -0.167 16.038 Atomic orbital electron populations 1.23378 0.75206 1.04313 1.02775 1.86682 1.24049 1.31559 1.83765 1.19252 0.85277 0.82189 0.73201 1.90885 1.64231 1.35780 1.46539 1.20655 0.87883 0.85965 1.16222 1.84166 1.15037 1.34158 1.69814 1.22983 0.82546 0.94542 1.05489 1.16779 0.85351 0.82484 0.78334 1.90892 1.24000 1.73053 1.49975 1.46084 1.11852 1.04605 1.71574 1.19901 0.85088 0.92905 0.88293 0.89156 1.20820 0.98191 0.95991 1.44121 0.90237 1.25076 0.94824 0.99826 0.94566 1.70380 1.01715 1.35154 1.39901 0.86227 0.78079 0.81689 0.79637 1.19728 1.20807 1.19701 1.23087 0.76776 0.72819 0.91249 1.93075 1.93781 1.44717 1.88383 1.93004 1.62762 1.83641 1.79471 1.93416 1.49506 1.72473 1.96110 1.21834 0.97263 0.93582 1.04395 1.20613 0.92161 0.95988 0.99382 1.20495 1.02169 0.89281 1.03335 0.87532 0.91519 0.91514 0.75821 0.91902 0.80962 0.90261 0.89555 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.34 -4.10 10.58 -42.24 -0.45 -4.55 16 3 C 0.56 7.19 7.95 34.34 0.27 7.46 16 4 O -0.48 -6.40 14.51 -19.29 -0.28 -6.68 16 5 C -0.06 -0.78 7.19 -36.55 -0.26 -1.04 16 6 O -0.14 -2.11 10.41 4.12 0.04 -2.07 16 7 C 0.00 -0.01 7.14 -36.49 -0.26 -0.27 16 8 C 0.59 11.51 7.34 -12.56 -0.09 11.42 16 9 O -0.50 -11.17 15.43 5.27 0.08 -11.09 16 10 N -0.69 -14.09 4.98 -56.05 -0.28 -14.37 16 11 C 0.24 5.86 2.21 -69.09 -0.15 5.70 16 12 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16 13 C -0.55 -13.76 8.47 -34.44 -0.29 -14.05 16 14 H 0.08 1.87 7.74 -52.48 -0.41 1.46 16 15 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16 16 N -0.84 -22.34 9.50 55.43 0.53 -21.81 16 17 Si 0.92 19.64 29.54 -169.99 -5.02 14.62 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.42 10.42 2.81 37.16 0.10 10.52 16 22 F -0.22 -5.35 15.67 2.25 0.04 -5.32 16 23 F -0.21 -5.02 16.94 2.25 0.04 -4.98 16 24 F -0.13 -3.61 12.91 2.25 0.03 -3.58 16 25 C -0.15 -2.09 10.55 -39.50 -0.42 -2.51 16 26 C -0.08 -1.01 6.18 -104.52 -0.65 -1.65 16 27 C -0.10 -0.93 9.81 36.01 0.35 -0.58 16 28 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 7.42 8.30 -40.82 -0.34 7.08 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.17 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.87 6.43 -51.93 -0.33 0.54 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -29.43 334.30 -3.80 -33.23 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.14 Total: 3.60 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: -0.42 Total: 17.95 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.25 Total: -36.18 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.60 Total: -24.38 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 0.10 Total: -13.88 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.43 -3.80 -33.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.259 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds