Wall clock time and date at job start Tue Mar 31 2020 19:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34820 * 117.00536 * 2 1 4 4 O 1.21533 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.47134 * 120.00048 * 179.97438 * 3 2 1 6 6 O 1.34572 * 125.81769 * 0.33774 * 5 3 2 7 7 C 1.34535 * 109.37280 * 180.15036 * 6 5 3 8 8 C 1.47325 * 125.79934 * 179.83030 * 7 6 5 9 9 O 1.21606 * 120.00077 * 179.68881 * 8 7 6 10 10 N 1.34777 * 119.99862 * 359.68468 * 8 7 6 11 11 C 1.46500 * 119.99995 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46596 * 35.00583 * 11 10 8 13 13 C 1.50696 * 109.47188 * 155.00083 * 11 10 8 14 14 H 1.08003 * 120.00087 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00316 * 179.97438 * 13 11 10 16 16 N 1.31515 * 119.99571 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00268 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46848 * 60.00333 * 17 15 13 19 19 H 1.48500 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47295 * 300.00839 * 17 15 13 21 21 C 1.52997 * 109.47473 * 275.00486 * 11 10 8 22 22 F 1.39905 * 109.47157 * 59.99740 * 21 11 10 23 23 F 1.39900 * 109.47010 * 300.00131 * 21 11 10 24 24 F 1.39897 * 109.47422 * 179.97438 * 21 11 10 25 25 C 1.36579 * 108.40247 * 359.56281 * 7 6 5 26 26 C 1.36644 * 125.81252 * 180.02562 * 5 3 2 27 27 C 1.50702 * 126.53963 * 0.06046 * 26 5 3 28 28 H 1.09000 * 109.47678 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47016 * 299.99968 * 1 2 3 30 30 H 1.09000 * 109.47535 * 59.99438 * 1 2 3 31 31 H 0.96995 * 120.00034 * 0.02562 * 10 8 7 32 32 H 0.97003 * 119.99476 * 179.97438 * 16 15 13 33 33 H 1.07995 * 126.52989 * 180.24488 * 25 7 6 34 34 H 1.09002 * 109.47135 * 269.97991 * 27 26 5 35 35 H 1.08998 * 109.46966 * 29.97837 * 27 26 5 36 36 H 1.08996 * 109.47080 * 149.98597 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4023 2.2205 0.0005 5 6 3.5335 1.2781 0.0006 6 8 4.3769 0.2295 -0.0053 7 6 5.6456 0.6772 0.0007 8 6 6.8559 -0.1627 0.0006 9 8 7.9559 0.3558 0.0007 10 7 6.7440 -1.5059 0.0006 11 6 7.9475 -2.3412 0.0012 12 1 8.7257 -1.8567 0.5910 13 6 7.6258 -3.6854 0.6015 14 1 6.6247 -3.8966 0.9476 15 6 8.6090 -4.6462 0.7079 16 7 9.8278 -4.3891 0.2860 17 14 8.2099 -6.3127 1.4514 18 1 7.1496 -6.9722 0.6476 19 1 9.4299 -7.1594 1.4521 20 1 7.7330 -6.1312 2.8460 21 6 8.4389 -2.5287 -1.4356 22 9 8.7377 -1.2807 -1.9929 23 9 7.4401 -3.1503 -2.1926 24 9 9.5886 -3.3258 -1.4350 25 6 5.6209 2.0428 0.0007 26 6 4.2740 2.4264 0.0011 27 6 3.7427 3.8367 0.0025 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 5.8666 -1.9194 0.0003 32 1 10.5196 -5.0649 0.3612 33 1 6.4769 2.7012 0.0011 34 1 3.6144 4.1777 -1.0248 35 1 2.7819 3.8624 0.5166 36 1 4.4476 4.4900 0.5168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:01 Heat of formation + Delta-G solvation = -256.647921 kcal Electronic energy + Delta-G solvation = -29478.455580 eV Core-core repulsion = 24515.057076 eV Total energy + Delta-G solvation = -4963.398504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.45606 -48.09162 -47.75772 -44.11158 -41.41738 -40.59848 -37.82732 -36.74641 -35.38832 -34.53445 -32.36564 -30.45122 -29.50878 -28.09276 -26.67117 -25.79807 -23.54750 -22.79661 -22.23737 -21.18653 -19.71046 -19.42568 -18.93183 -18.73819 -18.61644 -18.15290 -18.09878 -17.64974 -17.13304 -16.89034 -16.34506 -15.66838 -15.45892 -15.08921 -15.00843 -14.74207 -14.55324 -14.49194 -14.37040 -14.33716 -14.32242 -14.06335 -14.04112 -13.92937 -13.82660 -13.30495 -13.11013 -12.97267 -12.83340 -12.62959 -12.27111 -11.91935 -11.84726 -11.66088 -11.51597 -10.96219 -10.70674 -10.34807 -9.99211 -8.23636 -6.54919 -0.75496 0.55094 0.92866 1.47496 1.49705 1.56209 1.56721 1.60842 1.86677 2.04019 2.37207 2.48652 2.91651 3.31433 3.45707 3.64742 3.73719 3.79627 4.05698 4.12822 4.17160 4.25414 4.34291 4.45785 4.70945 4.76201 4.79562 4.83151 4.91297 5.05184 5.13056 5.26557 5.41492 5.51684 5.60684 6.36577 6.42564 6.48989 6.89343 7.17622 8.68843 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003529 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.313783 B = 7933.422758 C = 9011.215566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.558 3.442 4 O -0.488 6.488 5 C -0.060 4.060 6 O -0.146 6.146 7 C -0.029 4.029 8 C 0.591 3.409 9 O -0.536 6.536 10 N -0.691 5.691 11 C 0.250 3.750 12 H 0.061 0.939 13 C -0.565 4.565 14 H 0.091 0.909 15 C 0.019 3.981 16 N -0.871 5.871 17 Si 0.983 3.017 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.414 3.586 22 F -0.217 7.217 23 F -0.203 7.203 24 F -0.147 7.147 25 C -0.130 4.130 26 C -0.074 4.074 27 C -0.094 4.094 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.416 0.584 32 H 0.271 0.729 33 H 0.189 0.811 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 9.779 0.311 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.403 3.597 4 O -0.378 6.378 5 C -0.112 4.112 6 O -0.042 6.042 7 C -0.083 4.083 8 C 0.376 3.624 9 O -0.415 6.415 10 N -0.341 5.341 11 C 0.143 3.857 12 H 0.079 0.921 13 C -0.601 4.601 14 H 0.109 0.891 15 C -0.187 4.187 16 N -0.505 5.505 17 Si 0.806 3.194 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.187 1.187 21 C 0.358 3.642 22 F -0.199 7.199 23 F -0.185 7.185 24 F -0.128 7.128 25 C -0.150 4.150 26 C -0.076 4.076 27 C -0.150 4.150 28 H 0.149 0.851 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.253 0.747 32 H 0.080 0.920 33 H 0.206 0.794 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.118 10.002 0.259 18.129 hybrid contribution -0.076 -1.086 -0.191 1.105 sum -15.194 8.916 0.069 17.617 Atomic orbital electron populations 1.23740 0.72880 1.06292 1.03518 1.86669 1.26377 1.30965 1.83340 1.19127 0.84875 0.82540 0.73196 1.90881 1.64153 1.35960 1.46818 1.21124 0.88511 0.86069 1.15463 1.84123 1.14753 1.34875 1.70403 1.22321 0.82058 0.94669 1.09270 1.17050 0.86179 0.82145 0.77010 1.90862 1.25708 1.73556 1.51326 1.45926 1.11133 1.04932 1.72077 1.19535 0.85713 0.93185 0.87231 0.92087 1.21147 0.98777 0.96220 1.43986 0.89078 1.25947 0.94586 1.03361 0.94767 1.70500 1.02639 1.36230 1.41083 0.85217 0.77800 0.77243 0.79146 1.19179 1.20809 1.18716 1.23238 0.76497 0.72660 0.91843 1.93068 1.93796 1.44632 1.88426 1.92999 1.62468 1.83586 1.79405 1.93389 1.50297 1.72889 1.96217 1.22123 0.98450 0.92655 1.01799 1.20965 0.91293 0.97184 0.98199 1.20605 1.02421 0.87568 1.04414 0.85050 0.90751 0.90812 0.74685 0.91951 0.79401 0.88959 0.89808 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.56 16 2 O -0.36 -7.93 10.58 -55.96 -0.59 -8.52 16 3 C 0.56 13.51 7.95 70.16 0.56 14.07 16 4 O -0.49 -11.90 14.51 19.73 0.29 -11.61 16 5 C -0.06 -1.59 7.19 24.23 0.17 -1.42 16 6 O -0.15 -4.40 10.41 -7.18 -0.07 -4.47 16 7 C -0.03 -0.92 7.14 24.27 0.17 -0.75 16 8 C 0.59 23.46 7.34 86.63 0.64 24.10 16 9 O -0.54 -24.33 15.43 -4.05 -0.06 -24.39 16 10 N -0.69 -28.53 4.98 -449.49 -2.24 -30.77 16 11 C 0.25 12.29 2.21 44.24 0.10 12.39 16 12 H 0.06 3.36 7.58 -2.39 -0.02 3.34 16 13 C -0.56 -28.08 8.47 25.60 0.22 -27.86 16 14 H 0.09 4.21 7.74 -2.91 -0.02 4.19 16 15 C 0.02 0.98 5.20 84.66 0.44 1.42 16 16 N -0.87 -47.05 9.50 21.45 0.20 -46.84 16 17 Si 0.98 39.80 29.54 68.60 2.03 41.82 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 C 0.41 21.05 2.81 71.98 0.20 21.25 16 22 F -0.22 -10.89 15.67 44.97 0.70 -10.19 16 23 F -0.20 -9.87 16.94 44.97 0.76 -9.11 16 24 F -0.15 -8.08 12.91 44.97 0.58 -7.50 16 25 C -0.13 -3.42 10.55 22.32 0.24 -3.18 16 26 C -0.07 -1.73 6.18 -19.80 -0.12 -1.85 16 27 C -0.09 -1.54 9.81 71.24 0.70 -0.84 16 28 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.42 15.27 8.30 -92.71 -0.77 14.50 16 32 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.47 6.43 -2.39 -0.02 1.45 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -63.12 334.30 6.51 -56.61 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.40 Total: 16.08 kcal Atomic # 6 Polarization: 34.38 SS G_CDS: 4.51 Total: 38.88 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.04 Total: -77.61 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.44 Total: -48.99 kcal Atomic # 9 Polarization: -28.84 SS G_CDS: 2.05 Total: -26.80 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -63.12 6.51 -56.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.039 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds