Wall clock time and date at job start Tue Mar 31 2020 18:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47089 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46918 * 119.99553 * 3 2 1 6 6 H 1.48498 * 109.47088 * 239.99912 * 3 2 1 7 7 C 1.38811 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00106 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00025 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.63652 * 328.13810 * 10 9 7 12 12 C 1.55155 * 110.71817 * 205.00245 * 10 9 7 13 13 C 1.54918 * 101.57746 * 206.12974 * 12 10 9 14 14 N 1.47424 * 104.83002 * 37.00911 * 13 12 10 15 15 C 1.34781 * 125.64597 * 155.83609 * 14 13 12 16 16 O 1.21634 * 119.99621 * 180.02562 * 15 14 13 17 17 C 1.47261 * 120.00164 * 0.02562 * 15 14 13 18 18 N 1.33563 * 123.14269 * 284.05457 * 17 15 14 19 19 C 1.28647 * 115.76650 * 179.82772 * 18 17 15 20 20 S 1.70766 * 110.56028 * 0.42274 * 19 18 17 21 21 C 1.35204 * 123.14223 * 104.34301 * 17 15 14 22 22 C 1.50699 * 125.58664 * 359.96471 * 21 17 15 23 23 F 1.39903 * 109.47048 * 64.58645 * 22 21 17 24 24 F 1.39906 * 109.46955 * 184.58356 * 22 21 17 25 25 F 1.39894 * 109.47193 * 304.58249 * 22 21 17 26 26 C 1.47020 * 108.70492 * 335.87040 * 14 13 12 27 27 H 0.97002 * 119.99792 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00488 * 359.97438 * 9 7 2 29 29 H 1.09003 * 111.00235 * 324.20116 * 12 10 9 30 30 H 1.08998 * 111.00887 * 88.05947 * 12 10 9 31 31 H 1.08998 * 110.36471 * 155.84396 * 13 12 10 32 32 H 1.08994 * 110.36881 * 278.05674 * 13 12 10 33 33 H 1.08003 * 124.71716 * 180.15197 * 19 18 17 34 34 H 1.09005 * 109.88221 * 241.64481 * 26 14 13 35 35 H 1.08998 * 109.88371 * 120.48285 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0009 -3.5566 -0.5361 12 6 1.1939 -4.7900 -0.6119 13 6 1.7910 -6.0433 0.0757 14 7 2.1093 -5.6057 1.4471 15 6 2.2101 -6.4092 2.5245 16 8 2.4785 -5.9365 3.6126 17 6 1.9952 -7.8593 2.3843 18 7 0.7852 -8.4086 2.2503 19 6 0.7623 -9.6897 2.1349 20 16 2.3454 -10.3263 2.2017 21 6 3.0040 -8.7594 2.3848 22 6 4.4690 -8.4348 2.5241 23 9 4.7065 -7.8840 3.7880 24 9 5.2220 -9.6046 2.3761 25 9 4.8385 -7.5144 1.5374 26 6 2.2978 -4.1476 1.4449 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 0.1430 -4.6647 -0.3511 30 1 1.3236 -4.8386 -1.6930 31 1 1.0586 -6.8503 0.0955 32 1 2.6951 -6.3650 -0.4411 33 1 -0.1339 -10.2807 2.0170 34 1 3.3142 -3.9047 1.7551 35 1 1.5805 -3.6801 2.1195 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969325623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:24 Heat of formation + Delta-G solvation = -108.441331 kcal Electronic energy + Delta-G solvation = -27004.765562 eV Core-core repulsion = 22522.839401 eV Total energy + Delta-G solvation = -4481.926161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.49636 -48.06714 -47.90529 -40.98782 -39.19991 -37.37989 -34.47747 -32.44350 -31.61618 -29.61384 -28.37392 -26.96489 -24.80276 -24.27257 -23.03639 -21.97970 -20.41035 -20.10525 -19.29428 -18.83338 -18.31305 -17.68768 -17.45367 -16.90027 -16.14725 -15.57767 -15.33982 -14.97360 -14.79604 -14.70050 -14.55565 -14.37947 -14.10480 -14.08200 -13.99465 -13.70078 -13.35350 -13.06417 -12.90993 -12.84431 -12.38692 -12.04928 -11.55598 -11.30061 -10.75085 -10.69307 -10.54075 -10.47232 -10.37092 -10.19962 -10.00437 -9.61613 -9.24771 -9.03667 -8.54468 -7.18798 -6.17852 -3.20455 -0.30941 0.39621 0.84764 1.76997 2.18758 2.35041 2.86448 3.23243 3.50498 3.54006 3.70522 3.71281 3.81600 3.96172 4.34797 4.51695 4.61845 4.79366 5.01059 5.12412 5.21860 5.42402 5.61560 5.63804 5.80569 5.90399 6.16381 6.21641 6.31756 6.50540 6.73304 6.77714 7.46702 7.73503 7.97938 8.67693 9.10562 9.97331 10.09902 11.29833 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.003090 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.501215 B = 9058.034503 C = 9654.615828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.039 4.039 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.342 4.342 8 H 0.068 0.932 9 N -0.722 5.722 10 C 0.178 3.822 11 H 0.073 0.927 12 C -0.140 4.140 13 C 0.099 3.901 14 N -0.590 5.590 15 C 0.590 3.410 16 O -0.512 6.512 17 C 0.115 3.885 18 N -0.435 5.435 19 C 0.024 3.976 20 S 0.287 5.713 21 C -0.358 4.358 22 C 0.550 3.450 23 F -0.155 7.155 24 F -0.171 7.171 25 F -0.161 7.161 26 C 0.083 3.917 27 H 0.256 0.744 28 H 0.370 0.630 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.965 -26.866 0.939 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.237 4.237 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.473 4.473 8 H 0.086 0.914 9 N -0.363 5.363 10 C 0.066 3.934 11 H 0.091 0.909 12 C -0.179 4.179 13 C -0.024 4.024 14 N -0.323 5.323 15 C 0.372 3.628 16 O -0.387 6.387 17 C -0.027 4.027 18 N -0.149 5.149 19 C -0.273 4.273 20 S 0.545 5.455 21 C -0.482 4.482 22 C 0.493 3.507 23 F -0.136 7.136 24 F -0.152 7.152 25 F -0.143 7.143 26 C -0.042 4.042 27 H 0.067 0.933 28 H 0.205 0.795 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.067 -25.635 1.504 26.175 hybrid contribution 0.098 -0.876 0.234 0.912 sum 5.165 -26.511 1.738 27.065 Atomic orbital electron populations 1.70898 1.06095 1.28533 1.52780 1.25827 0.96982 1.01130 0.99774 0.83246 0.74270 0.75454 0.75987 1.20976 1.22084 1.22112 1.20073 0.92174 0.85552 1.49453 0.91404 1.42387 1.04894 1.00390 1.88607 1.21150 0.95420 0.85848 0.90991 0.90936 1.23096 1.00677 0.93865 1.00263 1.22392 0.99811 0.98326 0.81852 1.48386 1.66954 1.09230 1.07690 1.16681 0.78907 0.82971 0.84194 1.90902 1.48203 1.74306 1.25308 1.20447 0.86904 0.96741 0.98589 1.67237 1.23142 1.09886 1.14655 1.28902 1.03133 0.93935 1.01376 1.82893 0.99117 1.02293 1.61161 1.25699 0.98558 1.02027 1.21938 1.16849 0.83842 0.74844 0.75168 1.93323 1.94895 1.85547 1.39864 1.93220 1.78347 1.48115 1.95567 1.93282 1.92330 1.66729 1.61911 1.23387 1.01861 0.76218 1.02695 0.93310 0.79549 0.90489 0.89735 0.90942 0.91152 0.76498 0.91679 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.63 13.70 55.49 0.76 -27.87 16 2 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 3 Si 1.08 25.65 29.92 -169.99 -5.09 20.57 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.34 -9.39 9.96 -15.06 -0.15 -9.54 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.51 5.15 -51.65 -0.27 -17.77 16 10 C 0.18 3.44 3.61 -66.10 -0.24 3.20 16 11 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 12 C -0.14 -2.12 6.71 -24.58 -0.17 -2.29 16 13 C 0.10 1.36 6.68 -2.52 -0.02 1.34 16 14 N -0.59 -10.03 3.33 -171.84 -0.57 -10.60 16 15 C 0.59 10.50 6.73 -12.59 -0.08 10.41 16 16 O -0.51 -10.90 17.32 5.25 0.09 -10.81 16 17 C 0.11 1.61 5.39 -84.53 -0.46 1.15 16 18 N -0.44 -5.22 10.46 -12.36 -0.13 -5.34 16 19 C 0.02 0.16 12.17 51.43 0.63 0.79 16 20 S 0.29 1.89 22.38 -107.50 -2.41 -0.52 16 21 C -0.36 -4.16 5.81 -35.39 -0.21 -4.36 16 22 C 0.55 6.88 3.07 36.01 0.11 6.99 16 23 F -0.16 -2.27 17.17 2.25 0.04 -2.23 16 24 F -0.17 -1.79 16.81 2.25 0.04 -1.75 16 25 F -0.16 -2.19 16.82 2.25 0.04 -2.16 16 26 C 0.08 1.62 6.62 -3.07 -0.02 1.60 16 27 H 0.26 7.65 6.77 -40.82 -0.28 7.37 16 28 H 0.37 9.27 6.59 -40.82 -0.27 9.00 16 29 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.89 7.49 -51.93 -0.39 0.51 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.22 0.52 8.06 -52.48 -0.42 0.10 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.68 8.03 -51.93 -0.42 1.26 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -34.70 331.91 -6.27 -40.97 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -3.08 Total: 4.41 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -0.70 Total: 8.09 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.21 Total: -61.58 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.57 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.41 Total: -0.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.70 -6.27 -40.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969325623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.473 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds