Wall clock time and date at job start Tue Mar 31 2020 18:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47089 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46918 * 119.99553 * 3 2 1 6 6 H 1.48498 * 109.47088 * 239.99912 * 3 2 1 7 7 C 1.38811 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00106 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00025 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.63652 * 328.13810 * 10 9 7 12 12 C 1.55155 * 110.71817 * 205.00245 * 10 9 7 13 13 C 1.54918 * 101.57746 * 206.12974 * 12 10 9 14 14 N 1.47424 * 104.83002 * 37.00911 * 13 12 10 15 15 C 1.34781 * 125.64597 * 155.83609 * 14 13 12 16 16 O 1.21634 * 119.99621 * 180.02562 * 15 14 13 17 17 C 1.47261 * 120.00164 * 0.02562 * 15 14 13 18 18 N 1.33563 * 123.14269 * 284.05457 * 17 15 14 19 19 C 1.28647 * 115.76650 * 179.82772 * 18 17 15 20 20 S 1.70766 * 110.56028 * 0.42274 * 19 18 17 21 21 C 1.35204 * 123.14223 * 104.34301 * 17 15 14 22 22 C 1.50699 * 125.58664 * 359.96471 * 21 17 15 23 23 F 1.39903 * 109.47048 * 64.58645 * 22 21 17 24 24 F 1.39906 * 109.46955 * 184.58356 * 22 21 17 25 25 F 1.39894 * 109.47193 * 304.58249 * 22 21 17 26 26 C 1.47020 * 108.70492 * 335.87040 * 14 13 12 27 27 H 0.97002 * 119.99792 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00488 * 359.97438 * 9 7 2 29 29 H 1.09003 * 111.00235 * 324.20116 * 12 10 9 30 30 H 1.08998 * 111.00887 * 88.05947 * 12 10 9 31 31 H 1.08998 * 110.36471 * 155.84396 * 13 12 10 32 32 H 1.08994 * 110.36881 * 278.05674 * 13 12 10 33 33 H 1.08003 * 124.71716 * 180.15197 * 19 18 17 34 34 H 1.09005 * 109.88221 * 241.64481 * 26 14 13 35 35 H 1.08998 * 109.88371 * 120.48285 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0009 -3.5566 -0.5361 12 6 1.1939 -4.7900 -0.6119 13 6 1.7910 -6.0433 0.0757 14 7 2.1093 -5.6057 1.4471 15 6 2.2101 -6.4092 2.5245 16 8 2.4785 -5.9365 3.6126 17 6 1.9952 -7.8593 2.3843 18 7 0.7852 -8.4086 2.2503 19 6 0.7623 -9.6897 2.1349 20 16 2.3454 -10.3263 2.2017 21 6 3.0040 -8.7594 2.3848 22 6 4.4690 -8.4348 2.5241 23 9 4.7065 -7.8840 3.7880 24 9 5.2220 -9.6046 2.3761 25 9 4.8385 -7.5144 1.5374 26 6 2.2978 -4.1476 1.4449 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 0.1430 -4.6647 -0.3511 30 1 1.3236 -4.8386 -1.6930 31 1 1.0586 -6.8503 0.0955 32 1 2.6951 -6.3650 -0.4411 33 1 -0.1339 -10.2807 2.0170 34 1 3.3142 -3.9047 1.7551 35 1 1.5805 -3.6801 2.1195 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969325623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:23 Heat of formation + Delta-G solvation = -133.781638 kcal Electronic energy + Delta-G solvation = -27005.864401 eV Core-core repulsion = 22522.839401 eV Total energy + Delta-G solvation = -4483.025000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.46759 -48.99861 -48.94465 -42.01445 -40.37876 -38.84569 -36.34622 -33.60638 -33.07716 -31.16048 -29.71584 -28.18666 -26.00518 -25.57316 -24.63292 -23.08279 -21.83762 -21.11534 -20.33823 -19.82951 -19.62370 -19.31046 -18.52237 -18.07944 -17.44929 -16.90477 -16.48997 -16.08086 -15.92912 -15.79237 -15.67077 -15.55429 -15.36342 -15.29551 -15.10061 -15.06802 -14.94010 -14.47244 -14.12430 -13.76582 -13.60972 -13.28612 -13.06204 -12.91197 -12.62070 -12.45974 -11.89234 -11.83770 -11.61524 -11.29332 -11.27809 -11.11485 -11.02051 -10.28299 -9.95698 -9.24736 -8.42573 -5.39340 -1.05647 -0.26630 0.18467 0.87785 1.19427 1.28472 1.58459 1.64519 1.68667 1.84354 2.31606 2.68275 2.74198 2.90727 2.98268 3.33236 3.44362 3.56079 3.64629 3.70288 3.89621 4.14763 4.16511 4.32611 4.43729 4.50494 4.69575 4.81324 4.97079 5.02174 5.19466 5.57593 6.07652 6.14613 6.46344 6.63192 7.02233 7.91478 8.01744 9.08747 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.003090 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.501215 B = 9058.034503 C = 9654.615828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.098 4.098 3 Si 1.126 2.874 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.173 3.827 11 H 0.077 0.923 12 C -0.126 4.126 13 C 0.106 3.894 14 N -0.592 5.592 15 C 0.585 3.415 16 O -0.564 6.564 17 C 0.094 3.906 18 N -0.474 5.474 19 C 0.035 3.965 20 S 0.393 5.607 21 C -0.381 4.381 22 C 0.545 3.455 23 F -0.174 7.174 24 F -0.158 7.158 25 F -0.172 7.172 26 C 0.094 3.906 27 H 0.245 0.755 28 H 0.363 0.637 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.266 0.734 34 H 0.052 0.948 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -30.264 -0.339 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.290 4.290 3 Si 0.951 3.049 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.470 4.470 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.063 3.937 11 H 0.095 0.905 12 C -0.165 4.165 13 C -0.016 4.016 14 N -0.324 5.324 15 C 0.370 3.630 16 O -0.442 6.442 17 C -0.049 4.049 18 N -0.188 5.188 19 C -0.260 4.260 20 S 0.652 5.348 21 C -0.506 4.506 22 C 0.489 3.511 23 F -0.155 7.155 24 F -0.139 7.139 25 F -0.153 7.153 26 C -0.032 4.032 27 H 0.056 0.944 28 H 0.196 0.804 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.282 0.718 34 H 0.070 0.930 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.409 -29.139 0.192 29.637 hybrid contribution 0.044 -0.063 0.663 0.667 sum 5.453 -29.202 0.854 29.719 Atomic orbital electron populations 1.70999 1.07208 1.28018 1.55730 1.27182 0.97061 1.04654 1.00085 0.82655 0.73434 0.71665 0.77188 1.21918 1.20876 1.19799 1.20414 0.92514 0.86810 1.47279 0.91170 1.42527 1.04739 1.01374 1.88892 1.21336 0.96125 0.85314 0.90971 0.90482 1.23016 0.99385 0.92408 1.01675 1.22561 1.01372 0.97933 0.79735 1.48434 1.66704 1.07987 1.09243 1.17323 0.77492 0.84926 0.83300 1.90852 1.50292 1.75943 1.27140 1.19830 0.88660 0.94494 1.01885 1.67221 1.22275 1.12304 1.17049 1.29686 1.05452 0.92703 0.98202 1.82592 0.96849 0.97462 1.57852 1.25867 0.97424 1.04992 1.22315 1.17020 0.84893 0.74924 0.74273 1.93284 1.95127 1.85977 1.41144 1.93239 1.78173 1.47062 1.95425 1.93252 1.92570 1.67326 1.62188 1.22933 0.99943 0.78397 1.01902 0.94432 0.80375 0.91236 0.87118 0.88778 0.88764 0.71841 0.92981 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.84 13.70 21.65 0.30 -60.55 16 2 C -0.10 -5.69 5.50 84.86 0.47 -5.22 16 3 Si 1.13 52.14 29.92 68.60 2.05 54.20 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.34 -18.91 9.96 84.03 0.84 -18.07 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 9 N -0.73 -36.53 5.15 -317.33 -1.63 -38.16 16 10 C 0.17 6.73 3.61 46.18 0.17 6.90 16 11 H 0.08 2.93 8.09 -2.38 -0.02 2.91 16 12 C -0.13 -3.66 6.71 31.99 0.21 -3.45 16 13 C 0.11 2.70 6.68 86.86 0.58 3.28 16 14 N -0.59 -20.38 3.33 -815.83 -2.71 -23.09 16 15 C 0.59 21.28 6.73 86.61 0.58 21.87 16 16 O -0.56 -25.32 17.32 -4.14 -0.07 -25.40 16 17 C 0.09 2.54 5.39 40.55 0.22 2.76 16 18 N -0.47 -10.22 10.46 -193.03 -2.02 -12.24 16 19 C 0.03 0.33 12.17 130.71 1.59 1.92 16 20 S 0.39 3.45 22.38 -56.49 -1.26 2.19 16 21 C -0.38 -8.11 5.81 24.99 0.15 -7.96 16 22 C 0.55 13.17 3.07 71.24 0.22 13.39 16 23 F -0.17 -5.18 17.17 44.97 0.77 -4.41 16 24 F -0.16 -2.98 16.81 44.97 0.76 -2.22 16 25 F -0.17 -4.61 16.82 44.97 0.76 -3.86 16 26 C 0.09 3.83 6.62 86.73 0.57 4.40 16 27 H 0.25 15.24 6.77 -92.71 -0.63 14.61 16 28 H 0.36 18.86 6.59 -92.71 -0.61 18.25 16 29 H 0.07 2.15 8.01 -2.39 -0.02 2.13 16 30 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.09 2.07 7.49 -2.39 -0.02 2.05 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.27 -0.34 8.06 -2.91 -0.02 -0.37 16 34 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.04 1.90 8.03 -2.39 -0.02 1.88 16 Total: -1.00 -80.62 331.91 3.23 -77.39 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.70 Total: 16.34 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 5.60 Total: 19.81 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -6.07 Total: -134.04 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.07 Total: -25.40 kcal Atomic # 9 Polarization: -12.77 SS G_CDS: 2.28 Total: -10.48 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.20 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.26 Total: 2.19 kcal Total: -80.62 3.23 -77.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969325623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.396 kcal (2) G-P(sol) polarization free energy of solvation -80.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds