Wall clock time and date at job start Tue Mar 31 2020 18:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99726 * 2 1 4 4 H 1.48498 * 109.46950 * 240.00091 * 3 2 1 5 5 H 1.48494 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46985 * 120.00142 * 3 2 1 7 7 C 1.38813 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99447 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00466 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64636 * 359.97438 * 9 7 2 11 11 C 1.54320 * 107.27040 * 178.98714 * 10 9 7 12 12 C 1.55152 * 102.94360 * 337.80823 * 11 10 9 13 13 H 1.09001 * 111.00598 * 153.61511 * 12 11 10 14 14 N 1.46501 * 111.00313 * 277.42715 * 12 11 10 15 15 C 1.34787 * 119.99726 * 204.99643 * 14 12 11 16 16 O 1.21686 * 120.00090 * 0.02562 * 15 14 12 17 17 C 1.46687 * 119.99572 * 180.02562 * 15 14 12 18 18 S 1.76210 * 126.13134 * 0.03106 * 17 15 14 19 19 C 1.70958 * 90.31208 * 180.02562 * 18 17 15 20 20 N 1.29426 * 110.39207 * 359.97438 * 19 18 17 21 21 C 1.30950 * 117.36226 * 0.02562 * 20 19 18 22 22 C 1.50701 * 122.90213 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46912 * 4.97219 * 22 21 20 24 24 F 1.39893 * 109.46900 * 124.97372 * 22 21 20 25 25 F 1.39905 * 109.46972 * 244.97295 * 22 21 20 26 26 C 1.47428 * 125.65400 * 180.02562 * 9 7 2 27 27 H 0.96995 * 120.00345 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.87809 * 59.57059 * 10 9 7 29 29 H 1.08995 * 109.88284 * 298.40729 * 10 9 7 30 30 H 1.09005 * 110.71805 * 219.44839 * 11 10 9 31 31 H 1.08998 * 110.72321 * 96.17366 * 11 10 9 32 32 H 0.96999 * 120.00382 * 25.00662 * 14 12 11 33 33 H 1.07996 * 124.80258 * 180.02562 * 19 18 17 34 34 H 1.09001 * 110.36177 * 85.24296 * 26 9 7 35 35 H 1.08999 * 110.35905 * 322.92450 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0442 -0.0260 12 6 0.8516 -4.6561 -0.6115 13 1 0.9834 -5.6856 -0.2783 14 7 0.8573 -4.5758 -2.0743 15 6 1.5888 -5.4494 -2.7943 16 8 2.2441 -6.3051 -2.2294 17 6 1.5948 -5.3686 -4.2590 18 16 0.7113 -4.2006 -5.2388 19 6 1.3405 -4.9056 -6.6634 20 7 2.1177 -5.8981 -6.3702 21 6 2.2816 -6.1799 -5.1019 22 6 3.1580 -7.3073 -4.6204 23 9 3.8170 -7.8842 -5.7113 24 9 4.1016 -6.8104 -3.7150 25 9 2.3688 -8.2740 -3.9879 26 6 1.9336 -3.7312 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.5581 -2.0523 -0.8828 29 1 -0.5536 -2.0845 0.9026 30 1 -1.2988 -4.2516 -0.6755 31 1 -0.6308 -4.4181 0.9815 32 1 0.3347 -3.8939 -2.5246 33 1 1.1213 -4.5697 -7.6661 34 1 2.1672 -4.0418 1.0178 35 1 2.8327 -3.7405 -0.6166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014766553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:22 Heat of formation + Delta-G solvation = -99.910439 kcal Electronic energy + Delta-G solvation = -27151.553289 eV Core-core repulsion = 22669.997054 eV Total energy + Delta-G solvation = -4481.556234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.01853 -47.55204 -47.46208 -40.59607 -39.42580 -37.32201 -33.96472 -32.19765 -31.47379 -29.34656 -28.11514 -26.98926 -25.04389 -24.56638 -22.49540 -20.46443 -20.18024 -20.05829 -19.52170 -18.41383 -18.24496 -17.21811 -17.02434 -16.64835 -16.05509 -15.52032 -15.12413 -14.68529 -14.40397 -14.29351 -14.23359 -14.04102 -13.90299 -13.81927 -13.62709 -13.58711 -13.38085 -13.03522 -12.55207 -12.03581 -11.92846 -11.82721 -11.04711 -10.96078 -10.84978 -10.52720 -10.42287 -10.22985 -10.06729 -10.02757 -9.99088 -9.75535 -9.70607 -8.95411 -8.63669 -6.90816 -5.79307 -3.12152 -0.32566 0.60262 1.01163 1.81382 2.51464 2.91041 3.05165 3.35730 3.40756 3.41502 3.44098 3.92415 4.31218 4.42032 4.43911 4.62224 4.73860 5.14938 5.18465 5.34982 5.40393 5.65606 5.71968 6.04178 6.23756 6.33918 6.37544 6.59793 6.82626 6.90310 7.42958 7.45100 7.51164 7.71881 8.08646 8.16723 9.14539 9.74140 10.39235 11.32497 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.003692 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.224605 B = 7582.114486 C = 8054.593420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.097 0.903 14 N -0.689 5.689 15 C 0.582 3.418 16 O -0.510 6.510 17 C -0.229 4.229 18 S 0.248 5.752 19 C 0.023 3.977 20 N -0.444 5.444 21 C 0.035 3.965 22 C 0.551 3.449 23 F -0.169 7.169 24 F -0.154 7.154 25 F -0.162 7.162 26 C 0.125 3.875 27 H 0.253 0.747 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.401 0.599 33 H 0.217 0.783 34 H 0.033 0.967 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 -11.017 -12.495 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.193 4.193 12 C 0.022 3.978 13 H 0.115 0.885 14 N -0.339 5.339 15 C 0.364 3.636 16 O -0.387 6.387 17 C -0.356 4.356 18 S 0.505 5.495 19 C -0.272 4.272 20 N -0.156 5.156 21 C -0.107 4.107 22 C 0.494 3.506 23 F -0.151 7.151 24 F -0.135 7.135 25 F -0.143 7.143 26 C -0.003 4.003 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.236 0.764 33 H 0.234 0.766 34 H 0.050 0.950 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.925 -10.801 -12.341 16.513 hybrid contribution 0.827 0.602 -0.072 1.025 sum -1.099 -10.200 -12.413 16.103 Atomic orbital electron populations 1.69929 1.04813 1.25178 1.57210 1.24763 0.95716 0.97571 1.02231 0.86209 0.78475 0.83175 0.77970 1.21228 1.21578 1.21151 1.19015 0.90442 0.82337 1.43712 0.90552 1.44484 1.01431 0.99870 1.87310 1.21201 0.84608 0.87843 1.01407 1.23253 0.95416 1.00087 1.00500 1.22298 0.98018 1.00112 0.77372 0.88486 1.45725 1.47430 1.32669 1.08067 1.16617 0.80881 0.82709 0.83357 1.90909 1.41711 1.35738 1.70365 1.25938 1.06510 1.02825 1.00346 1.84394 1.40475 1.27702 0.96934 1.28767 0.97977 0.95334 1.05154 1.65791 1.16839 1.16272 1.16683 1.20357 1.01992 0.99492 0.88826 1.16952 0.78222 0.80216 0.75227 1.93210 1.81842 1.85588 1.54428 1.93289 1.65254 1.87269 1.67657 1.93243 1.74079 1.64403 1.82557 1.21956 0.94647 0.86287 0.97366 0.93703 0.93584 0.93538 0.91486 0.90518 0.76364 0.76624 0.94985 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.63 10.31 55.49 0.57 -25.05 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.08 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.50 3.39 -170.07 -0.58 -15.08 16 10 C 0.17 3.83 5.36 -3.06 -0.02 3.82 16 11 C -0.15 -2.53 6.55 -24.90 -0.16 -2.70 16 12 C 0.13 2.13 3.43 -65.79 -0.23 1.91 16 13 H 0.10 1.56 7.54 -51.93 -0.39 1.17 16 14 N -0.69 -10.81 5.18 -53.03 -0.27 -11.09 16 15 C 0.58 9.36 7.73 -12.84 -0.10 9.26 16 16 O -0.51 -9.45 12.69 5.20 0.07 -9.39 16 17 C -0.23 -3.14 6.44 -37.10 -0.24 -3.38 16 18 S 0.25 2.33 22.35 -107.50 -2.40 -0.07 16 19 C 0.02 0.20 12.22 51.75 0.63 0.83 16 20 N -0.44 -5.44 10.11 -11.53 -0.12 -5.56 16 21 C 0.03 0.49 6.21 -83.89 -0.52 -0.03 16 22 C 0.55 8.37 2.79 36.01 0.10 8.47 16 23 F -0.17 -2.44 17.01 2.25 0.04 -2.40 16 24 F -0.15 -2.57 15.25 2.25 0.03 -2.53 16 25 F -0.16 -2.52 16.23 2.25 0.04 -2.49 16 26 C 0.12 2.53 6.93 -2.53 -0.02 2.52 16 27 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.05 1.09 7.38 -51.93 -0.38 0.71 16 29 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 5.89 7.85 -40.82 -0.32 5.57 16 33 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -31.64 323.87 -6.71 -38.35 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.14 Total: -0.17 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -0.80 Total: 14.18 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.40 Total: -56.78 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.11 Total: -7.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.40 Total: -0.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.64 -6.71 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014766553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.557 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds