Wall clock time and date at job start Tue Mar 31 2020 18:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99726 * 2 1 4 4 H 1.48498 * 109.46950 * 240.00091 * 3 2 1 5 5 H 1.48494 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46985 * 120.00142 * 3 2 1 7 7 C 1.38813 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99447 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00466 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64636 * 359.97438 * 9 7 2 11 11 C 1.54320 * 107.27040 * 178.98714 * 10 9 7 12 12 C 1.55152 * 102.94360 * 337.80823 * 11 10 9 13 13 H 1.09001 * 111.00598 * 153.61511 * 12 11 10 14 14 N 1.46501 * 111.00313 * 277.42715 * 12 11 10 15 15 C 1.34787 * 119.99726 * 204.99643 * 14 12 11 16 16 O 1.21686 * 120.00090 * 0.02562 * 15 14 12 17 17 C 1.46687 * 119.99572 * 180.02562 * 15 14 12 18 18 S 1.76210 * 126.13134 * 0.03106 * 17 15 14 19 19 C 1.70958 * 90.31208 * 180.02562 * 18 17 15 20 20 N 1.29426 * 110.39207 * 359.97438 * 19 18 17 21 21 C 1.30950 * 117.36226 * 0.02562 * 20 19 18 22 22 C 1.50701 * 122.90213 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46912 * 4.97219 * 22 21 20 24 24 F 1.39893 * 109.46900 * 124.97372 * 22 21 20 25 25 F 1.39905 * 109.46972 * 244.97295 * 22 21 20 26 26 C 1.47428 * 125.65400 * 180.02562 * 9 7 2 27 27 H 0.96995 * 120.00345 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.87809 * 59.57059 * 10 9 7 29 29 H 1.08995 * 109.88284 * 298.40729 * 10 9 7 30 30 H 1.09005 * 110.71805 * 219.44839 * 11 10 9 31 31 H 1.08998 * 110.72321 * 96.17366 * 11 10 9 32 32 H 0.96999 * 120.00382 * 25.00662 * 14 12 11 33 33 H 1.07996 * 124.80258 * 180.02562 * 19 18 17 34 34 H 1.09001 * 110.36177 * 85.24296 * 26 9 7 35 35 H 1.08999 * 110.35905 * 322.92450 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0442 -0.0260 12 6 0.8516 -4.6561 -0.6115 13 1 0.9834 -5.6856 -0.2783 14 7 0.8573 -4.5758 -2.0743 15 6 1.5888 -5.4494 -2.7943 16 8 2.2441 -6.3051 -2.2294 17 6 1.5948 -5.3686 -4.2590 18 16 0.7113 -4.2006 -5.2388 19 6 1.3405 -4.9056 -6.6634 20 7 2.1177 -5.8981 -6.3702 21 6 2.2816 -6.1799 -5.1019 22 6 3.1580 -7.3073 -4.6204 23 9 3.8170 -7.8842 -5.7113 24 9 4.1016 -6.8104 -3.7150 25 9 2.3688 -8.2740 -3.9879 26 6 1.9336 -3.7312 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.5581 -2.0523 -0.8828 29 1 -0.5536 -2.0845 0.9026 30 1 -1.2988 -4.2516 -0.6755 31 1 -0.6308 -4.4181 0.9815 32 1 0.3347 -3.8939 -2.5246 33 1 1.1213 -4.5697 -7.6661 34 1 2.1672 -4.0418 1.0178 35 1 2.8327 -3.7405 -0.6166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014766553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:21 Heat of formation + Delta-G solvation = -121.739548 kcal Electronic energy + Delta-G solvation = -27152.499870 eV Core-core repulsion = 22669.997054 eV Total energy + Delta-G solvation = -4482.502815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.19529 -48.71130 -48.67925 -41.62441 -40.61666 -38.85373 -35.53875 -33.82380 -32.60089 -31.04494 -29.44498 -28.36980 -26.42646 -25.96760 -23.70022 -21.98019 -21.54710 -21.39191 -20.59642 -19.59720 -19.44540 -18.83336 -18.22417 -17.85404 -17.26718 -16.65931 -16.61885 -16.15559 -15.76029 -15.50210 -15.46314 -15.31715 -15.19129 -15.07088 -14.94628 -14.83533 -14.72442 -14.05464 -14.02585 -13.84567 -13.59421 -12.89893 -12.83166 -12.77757 -12.34051 -12.12273 -12.05145 -11.81057 -11.61137 -11.50006 -11.07044 -10.95628 -10.70634 -10.52021 -10.23307 -8.85644 -7.83774 -5.17788 -1.23275 -0.25712 0.21906 0.93026 1.45930 1.47721 1.49316 1.55653 1.71507 1.87004 2.39125 2.50427 2.87198 3.25585 3.34809 3.41515 3.58318 3.66430 3.71921 3.84253 4.04540 4.30394 4.46436 4.65893 4.70316 4.86514 4.94239 5.03488 5.40487 5.45996 5.68191 5.78140 6.05323 6.20774 6.26795 6.86869 7.13561 7.78221 8.42085 9.25742 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.003692 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.224605 B = 7582.114486 C = 8054.593420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.620 5.620 10 C 0.182 3.818 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.111 0.889 14 N -0.688 5.688 15 C 0.583 3.417 16 O -0.541 6.541 17 C -0.267 4.267 18 S 0.303 5.697 19 C 0.049 3.951 20 N -0.471 5.471 21 C 0.033 3.967 22 C 0.545 3.455 23 F -0.168 7.168 24 F -0.168 7.168 25 F -0.168 7.168 26 C 0.122 3.878 27 H 0.248 0.752 28 H 0.024 0.976 29 H 0.011 0.989 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.406 0.594 33 H 0.267 0.733 34 H 0.035 0.965 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -10.834 -14.263 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.057 3.943 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.129 0.871 14 N -0.338 5.338 15 C 0.367 3.633 16 O -0.421 6.421 17 C -0.394 4.394 18 S 0.562 5.438 19 C -0.245 4.245 20 N -0.184 5.184 21 C -0.110 4.110 22 C 0.488 3.512 23 F -0.149 7.149 24 F -0.149 7.149 25 F -0.149 7.149 26 C -0.005 4.005 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.282 0.718 34 H 0.053 0.947 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.750 -10.622 -14.125 17.886 hybrid contribution 1.093 0.562 0.400 1.292 sum -1.658 -10.060 -13.725 17.098 Atomic orbital electron populations 1.70115 1.05799 1.25339 1.57941 1.25451 0.96552 1.00270 1.02455 0.85280 0.77294 0.79524 0.77966 1.20533 1.21691 1.21029 1.19281 0.90643 0.83849 1.43474 0.91073 1.44697 1.02489 1.00409 1.87141 1.21001 0.83323 0.91360 0.98616 1.23115 0.96137 0.95599 1.02349 1.22110 0.96547 0.99791 0.78084 0.87100 1.45661 1.47636 1.32907 1.07566 1.16890 0.79952 0.81959 0.84483 1.90882 1.42796 1.36885 1.71489 1.25731 1.08979 1.05337 0.99395 1.84251 1.38507 1.25296 0.95767 1.29654 0.94981 0.92974 1.06893 1.65845 1.18754 1.18152 1.15621 1.20219 1.01861 0.99085 0.89806 1.17193 0.78279 0.80749 0.75027 1.93203 1.81890 1.85662 1.54140 1.93251 1.65906 1.87455 1.68295 1.93219 1.74155 1.64787 1.82767 1.22062 0.95195 0.85646 0.97576 0.94251 0.95749 0.97093 0.88501 0.88749 0.75766 0.71762 0.94688 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.98 10.31 21.65 0.22 -52.76 16 2 C -0.05 -2.90 5.49 84.86 0.47 -2.44 16 3 Si 0.97 44.17 29.55 68.60 2.03 46.20 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.24 -13.21 10.28 84.03 0.86 -12.35 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.62 -30.07 3.39 -691.99 -2.35 -32.42 16 10 C 0.18 8.02 5.36 86.73 0.47 8.48 16 11 C -0.13 -4.16 6.55 31.78 0.21 -3.95 16 12 C 0.14 4.54 3.43 46.38 0.16 4.70 16 13 H 0.11 3.39 7.54 -2.39 -0.02 3.37 16 14 N -0.69 -20.84 5.18 -439.92 -2.28 -23.12 16 15 C 0.58 18.41 7.73 86.45 0.67 19.08 16 16 O -0.54 -20.13 12.69 -4.30 -0.05 -20.19 16 17 C -0.27 -6.99 6.44 23.88 0.15 -6.84 16 18 S 0.30 4.81 22.35 -56.49 -1.26 3.54 16 19 C 0.05 0.64 12.22 130.60 1.60 2.24 16 20 N -0.47 -10.46 10.11 -190.40 -1.92 -12.38 16 21 C 0.03 0.90 6.21 42.09 0.26 1.16 16 22 C 0.54 16.59 2.79 71.24 0.20 16.79 16 23 F -0.17 -4.81 17.01 44.97 0.77 -4.05 16 24 F -0.17 -5.74 15.25 44.97 0.69 -5.05 16 25 F -0.17 -5.30 16.23 44.97 0.73 -4.57 16 26 C 0.12 4.95 6.93 86.85 0.60 5.56 16 27 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 28 H 0.02 1.17 7.38 -2.38 -0.02 1.15 16 29 H 0.01 0.55 7.51 -2.39 -0.02 0.53 16 30 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.41 11.36 7.85 -92.71 -0.73 10.63 16 33 H 0.27 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.60 323.87 2.65 -67.95 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.44 Total: 4.41 kcal Atomic # 6 Polarization: 26.79 SS G_CDS: 5.64 Total: 32.43 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -6.33 Total: -120.68 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.19 kcal Atomic # 9 Polarization: -15.85 SS G_CDS: 2.18 Total: -13.67 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.26 Total: 3.54 kcal Total: -70.60 2.65 -67.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014766553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.788 kcal (2) G-P(sol) polarization free energy of solvation -70.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds