Wall clock time and date at job start Tue Mar 31 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48504 * 109.46932 * 239.99597 * 3 2 1 5 5 H 1.48496 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47346 * 119.99769 * 3 2 1 7 7 C 1.38815 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00413 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64532 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.27224 * 178.96307 * 10 9 7 12 12 C 1.55155 * 102.93787 * 337.80375 * 11 10 9 13 13 H 1.08998 * 111.00712 * 277.39003 * 12 11 10 14 14 N 1.46504 * 111.00502 * 153.57839 * 12 11 10 15 15 C 1.34770 * 120.00260 * 155.00077 * 14 12 11 16 16 O 1.21687 * 120.00063 * 359.72729 * 15 14 12 17 17 C 1.46684 * 119.99788 * 179.97438 * 15 14 12 18 18 S 1.76206 * 126.13447 * 353.58454 * 17 15 14 19 19 C 1.70947 * 90.31524 * 179.97438 * 18 17 15 20 20 N 1.29425 * 110.39389 * 0.29913 * 19 18 17 21 21 C 1.30945 * 117.36048 * 359.76303 * 20 19 18 22 22 C 1.50698 * 122.90316 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.46941 * 243.81900 * 22 21 20 24 24 F 1.39899 * 109.47001 * 3.81543 * 22 21 20 25 25 F 1.39890 * 109.47436 * 123.81576 * 22 21 20 26 26 C 1.47419 * 125.65135 * 179.97438 * 9 7 2 27 27 H 0.96998 * 119.99615 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.88636 * 59.54514 * 10 9 7 29 29 H 1.09004 * 109.88205 * 298.37541 * 10 9 7 30 30 H 1.08996 * 110.71656 * 219.44694 * 11 10 9 31 31 H 1.08996 * 110.87444 * 96.23596 * 11 10 9 32 32 H 0.97003 * 119.99381 * 334.99801 * 14 12 11 33 33 H 1.08010 * 124.80058 * 180.02562 * 19 18 17 34 34 H 1.09007 * 110.36421 * 85.26867 * 26 9 7 35 35 H 1.08998 * 110.36539 * 322.95476 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4485 -4.0442 -0.0261 12 6 0.8518 -4.6562 -0.6108 13 1 0.8565 -4.5970 -1.6992 14 7 1.0290 -6.0395 -0.1623 15 6 1.7592 -6.8990 -0.9002 16 8 2.2672 -6.5273 -1.9416 17 6 1.9371 -8.2839 -0.4507 18 16 1.4081 -8.9517 1.0918 19 6 2.0359 -10.4808 0.6558 20 7 2.5737 -10.4288 -0.5203 21 6 2.5436 -9.2787 -1.1456 22 6 3.1314 -9.0777 -2.5186 23 9 4.1888 -8.1648 -2.4440 24 9 3.6044 -10.3004 -3.0069 25 9 2.1466 -8.5814 -3.3793 26 6 1.9334 -3.7312 0.0005 27 1 -0.4849 0.8401 -0.0004 28 1 -0.5576 -2.0523 -0.8830 29 1 -0.5543 -2.0845 0.9024 30 1 -1.2985 -4.2515 -0.6762 31 1 -0.6334 -4.4205 0.9800 32 1 0.6208 -6.3368 0.6659 33 1 1.9939 -11.3640 1.2760 34 1 2.1666 -4.0420 1.0190 35 1 2.8328 -3.7405 -0.6151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014766554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:25 Heat of formation + Delta-G solvation = -98.400267 kcal Electronic energy + Delta-G solvation = -26707.967641 eV Core-core repulsion = 22226.476893 eV Total energy + Delta-G solvation = -4481.490748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.10160 -47.62939 -47.55100 -40.74794 -39.50839 -37.32636 -34.27510 -32.25756 -31.61092 -29.32674 -28.23705 -26.86704 -25.17551 -24.56397 -22.40035 -20.71400 -20.36870 -20.17413 -19.56762 -18.49465 -18.32790 -17.36498 -17.09236 -16.73149 -16.15243 -15.64666 -15.22786 -14.63188 -14.51625 -14.38108 -14.32641 -14.19615 -14.02490 -13.93201 -13.70587 -13.65286 -13.20846 -12.99785 -12.52067 -12.33844 -12.00082 -11.87575 -11.13611 -10.97141 -10.79319 -10.64349 -10.49365 -10.20373 -10.18361 -10.06731 -9.99823 -9.87068 -9.74971 -8.99383 -8.63495 -6.89300 -5.75061 -3.08951 -0.48975 0.41494 0.82017 1.66790 2.39731 2.79421 2.84846 3.33832 3.40655 3.44866 3.46059 3.80482 4.16028 4.32855 4.42362 4.51454 4.60092 4.99797 5.15568 5.37003 5.52515 5.62945 5.69155 6.02156 6.17840 6.31705 6.41092 6.59595 6.74020 6.80520 7.30923 7.49410 7.51726 7.76727 7.94219 8.20704 9.17796 9.77444 10.41376 11.36781 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.002985 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.700681 B = 9379.407584 C =10094.604140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.126 3.874 13 H 0.104 0.896 14 N -0.702 5.702 15 C 0.580 3.420 16 O -0.498 6.498 17 C -0.228 4.228 18 S 0.233 5.767 19 C 0.029 3.971 20 N -0.442 5.442 21 C 0.038 3.962 22 C 0.550 3.450 23 F -0.156 7.156 24 F -0.168 7.168 25 F -0.157 7.157 26 C 0.129 3.871 27 H 0.253 0.747 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.395 0.605 33 H 0.218 0.782 34 H 0.020 0.980 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 -23.301 3.647 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.122 0.878 14 N -0.352 5.352 15 C 0.362 3.638 16 O -0.374 6.374 17 C -0.355 4.355 18 S 0.490 5.510 19 C -0.267 4.267 20 N -0.154 5.154 21 C -0.103 4.103 22 C 0.493 3.507 23 F -0.137 7.137 24 F -0.150 7.150 25 F -0.139 7.139 26 C 0.002 3.998 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.230 0.770 33 H 0.235 0.765 34 H 0.038 0.962 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.088 -22.897 3.592 23.177 hybrid contribution 0.663 0.637 -0.402 1.004 sum 0.575 -22.260 3.189 22.494 Atomic orbital electron populations 1.69926 1.04891 1.25281 1.56974 1.24801 0.95754 0.97703 1.02025 0.86165 0.78454 0.82969 0.77980 1.21058 1.21559 1.21143 1.19031 0.90511 0.82193 1.44038 0.90358 1.44371 1.01588 0.99705 1.87288 1.21164 0.84544 0.87197 1.01667 1.23212 0.95675 1.00149 0.99785 1.22499 0.97466 0.77339 1.00554 0.87815 1.45892 1.51891 1.12049 1.25367 1.16657 0.80207 0.82237 0.84696 1.90959 1.47262 1.76690 1.22453 1.25957 1.08733 1.00578 1.00229 1.84135 1.50444 1.03707 1.12740 1.28775 0.99515 1.02955 0.95424 1.65791 1.18102 1.23823 1.07682 1.20402 1.03135 0.89221 0.97560 1.16961 0.76520 0.74305 0.82950 1.93279 1.57108 1.67059 1.96274 1.93216 1.88787 1.43940 1.89034 1.93268 1.61692 1.87625 1.71271 1.21815 0.94771 0.86193 0.97050 0.93625 0.93058 0.93410 0.91345 0.91959 0.77021 0.76538 0.96222 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.19 3.39 -170.08 -0.58 -15.77 16 10 C 0.18 4.15 5.37 -3.06 -0.02 4.14 16 11 C -0.15 -2.52 6.60 -24.89 -0.16 -2.68 16 12 C 0.13 2.16 3.42 -65.79 -0.23 1.94 16 13 H 0.10 1.98 7.53 -51.93 -0.39 1.59 16 14 N -0.70 -9.48 5.19 -53.04 -0.28 -9.75 16 15 C 0.58 8.51 7.69 -12.85 -0.10 8.41 16 16 O -0.50 -9.13 12.75 5.20 0.07 -9.07 16 17 C -0.23 -2.68 6.44 -37.09 -0.24 -2.91 16 18 S 0.23 1.52 22.38 -107.50 -2.41 -0.89 16 19 C 0.03 0.18 12.22 51.75 0.63 0.82 16 20 N -0.44 -4.69 10.11 -11.53 -0.12 -4.81 16 21 C 0.04 0.48 6.20 -83.89 -0.52 -0.04 16 22 C 0.55 7.90 2.79 36.00 0.10 8.00 16 23 F -0.16 -2.46 15.93 2.25 0.04 -2.43 16 24 F -0.17 -2.29 17.01 2.25 0.04 -2.26 16 25 F -0.16 -2.43 15.56 2.25 0.04 -2.40 16 26 C 0.13 2.68 6.93 -2.54 -0.02 2.66 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 29 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 32 H 0.40 4.09 7.77 -40.82 -0.32 3.77 16 33 H 0.22 0.40 8.06 -52.48 -0.42 -0.02 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 323.75 15.07 4.88 4.88 Total: -1.00 -33.45 323.75 -6.70 -40.15 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -3.13 Total: -2.11 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -0.80 Total: 13.50 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.40 Total: -56.39 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.11 Total: -7.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.41 Total: -0.89 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.45 -6.70 -40.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014766554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.247 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds