Wall clock time and date at job start Tue Mar 31 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48504 * 109.46932 * 239.99597 * 3 2 1 5 5 H 1.48496 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47346 * 119.99769 * 3 2 1 7 7 C 1.38815 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00413 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64532 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.27224 * 178.96307 * 10 9 7 12 12 C 1.55155 * 102.93787 * 337.80375 * 11 10 9 13 13 H 1.08998 * 111.00712 * 277.39003 * 12 11 10 14 14 N 1.46504 * 111.00502 * 153.57839 * 12 11 10 15 15 C 1.34770 * 120.00260 * 155.00077 * 14 12 11 16 16 O 1.21687 * 120.00063 * 359.72729 * 15 14 12 17 17 C 1.46684 * 119.99788 * 179.97438 * 15 14 12 18 18 S 1.76206 * 126.13447 * 353.58454 * 17 15 14 19 19 C 1.70947 * 90.31524 * 179.97438 * 18 17 15 20 20 N 1.29425 * 110.39389 * 0.29913 * 19 18 17 21 21 C 1.30945 * 117.36048 * 359.76303 * 20 19 18 22 22 C 1.50698 * 122.90316 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.46941 * 243.81900 * 22 21 20 24 24 F 1.39899 * 109.47001 * 3.81543 * 22 21 20 25 25 F 1.39890 * 109.47436 * 123.81576 * 22 21 20 26 26 C 1.47419 * 125.65135 * 179.97438 * 9 7 2 27 27 H 0.96998 * 119.99615 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.88636 * 59.54514 * 10 9 7 29 29 H 1.09004 * 109.88205 * 298.37541 * 10 9 7 30 30 H 1.08996 * 110.71656 * 219.44694 * 11 10 9 31 31 H 1.08996 * 110.87444 * 96.23596 * 11 10 9 32 32 H 0.97003 * 119.99381 * 334.99801 * 14 12 11 33 33 H 1.08010 * 124.80058 * 180.02562 * 19 18 17 34 34 H 1.09007 * 110.36421 * 85.26867 * 26 9 7 35 35 H 1.08998 * 110.36539 * 322.95476 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4485 -4.0442 -0.0261 12 6 0.8518 -4.6562 -0.6108 13 1 0.8565 -4.5970 -1.6992 14 7 1.0290 -6.0395 -0.1623 15 6 1.7592 -6.8990 -0.9002 16 8 2.2672 -6.5273 -1.9416 17 6 1.9371 -8.2839 -0.4507 18 16 1.4081 -8.9517 1.0918 19 6 2.0359 -10.4808 0.6558 20 7 2.5737 -10.4288 -0.5203 21 6 2.5436 -9.2787 -1.1456 22 6 3.1314 -9.0777 -2.5186 23 9 4.1888 -8.1648 -2.4440 24 9 3.6044 -10.3004 -3.0069 25 9 2.1466 -8.5814 -3.3793 26 6 1.9334 -3.7312 0.0005 27 1 -0.4849 0.8401 -0.0004 28 1 -0.5576 -2.0523 -0.8830 29 1 -0.5543 -2.0845 0.9024 30 1 -1.2985 -4.2515 -0.6762 31 1 -0.6334 -4.4205 0.9800 32 1 0.6208 -6.3368 0.6659 33 1 1.9939 -11.3640 1.2760 34 1 2.1666 -4.0420 1.0190 35 1 2.8328 -3.7405 -0.6151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014766554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:24 Heat of formation + Delta-G solvation = -122.767437 kcal Electronic energy + Delta-G solvation = -26709.024281 eV Core-core repulsion = 22226.476893 eV Total energy + Delta-G solvation = -4482.547388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.20612 -48.72052 -48.70090 -41.63590 -40.60236 -38.90282 -35.78856 -33.93061 -32.63579 -31.06629 -29.48321 -28.26957 -26.44040 -25.95636 -23.55457 -22.14942 -21.81652 -21.42092 -20.55523 -19.60774 -19.46771 -18.90584 -18.23120 -17.86242 -17.30056 -16.69890 -16.61469 -16.15768 -15.92907 -15.52468 -15.48082 -15.31739 -15.17353 -15.07220 -14.85334 -14.80422 -14.63422 -14.19917 -14.04018 -13.97878 -13.72490 -12.97927 -12.84792 -12.74675 -12.47227 -12.16115 -12.08265 -11.82593 -11.61708 -11.52413 -11.06603 -10.95663 -10.71427 -10.48131 -10.28703 -8.92683 -7.86915 -5.22884 -1.23223 -0.25812 0.21689 0.94667 1.45982 1.46248 1.49329 1.55331 1.71815 1.72913 2.40095 2.49552 2.86972 3.24131 3.31763 3.37377 3.56470 3.63428 3.72526 3.89387 4.00011 4.17790 4.48222 4.55291 4.67713 4.85466 4.91443 5.00018 5.35737 5.43224 5.63754 5.73744 6.08121 6.17946 6.24239 6.87852 7.09159 7.74136 8.36674 9.22798 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.002985 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.700681 B = 9379.407584 C =10094.604140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.625 5.625 10 C 0.184 3.816 11 C -0.127 4.127 12 C 0.145 3.855 13 H 0.082 0.918 14 N -0.687 5.687 15 C 0.581 3.419 16 O -0.544 6.544 17 C -0.269 4.269 18 S 0.331 5.669 19 C 0.047 3.953 20 N -0.475 5.475 21 C 0.034 3.966 22 C 0.540 3.460 23 F -0.171 7.171 24 F -0.168 7.168 25 F -0.170 7.170 26 C 0.128 3.872 27 H 0.249 0.751 28 H 0.014 0.986 29 H 0.020 0.980 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.415 0.585 33 H 0.267 0.733 34 H 0.036 0.964 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -25.654 6.108 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.058 3.942 11 C -0.166 4.166 12 C 0.039 3.961 13 H 0.100 0.900 14 N -0.339 5.339 15 C 0.365 3.635 16 O -0.423 6.423 17 C -0.397 4.397 18 S 0.589 5.411 19 C -0.247 4.247 20 N -0.187 5.187 21 C -0.109 4.109 22 C 0.483 3.517 23 F -0.153 7.153 24 F -0.150 7.150 25 F -0.151 7.151 26 C 0.001 3.999 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.253 0.747 33 H 0.283 0.717 34 H 0.054 0.946 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.650 -25.306 6.112 26.042 hybrid contribution 0.854 1.247 -1.085 1.860 sum 0.204 -24.059 5.027 24.580 Atomic orbital electron populations 1.70135 1.06071 1.25525 1.57790 1.25605 0.96681 1.00802 1.02195 0.85170 0.77236 0.78862 0.78157 1.20745 1.21638 1.20133 1.19376 0.90908 0.83757 1.43788 0.90516 1.44647 1.02725 1.00627 1.87235 1.20958 0.83351 0.91294 0.98552 1.23025 0.95953 0.95203 1.02399 1.21946 0.96183 0.78789 0.99136 0.89991 1.45542 1.51988 1.10282 1.26094 1.17013 0.79089 0.83431 0.83947 1.90935 1.48870 1.77978 1.24488 1.25677 1.11199 0.98901 1.03879 1.83808 1.47650 1.01851 1.07749 1.29677 0.96261 1.04671 0.94078 1.65833 1.20298 1.23069 1.09536 1.20141 1.03627 0.90444 0.96671 1.17327 0.76139 0.73918 0.84321 1.93236 1.57886 1.67722 1.96421 1.93202 1.88809 1.43689 1.89258 1.93230 1.62055 1.87852 1.71983 1.21929 0.95047 0.85257 0.97667 0.94177 0.96812 0.96150 0.89016 0.88500 0.74726 0.71741 0.94579 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.14 10.31 21.65 0.22 -55.91 16 2 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 3 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.25 -14.22 10.28 84.03 0.86 -13.35 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -32.19 3.39 -692.01 -2.35 -34.54 16 10 C 0.18 8.65 5.37 86.73 0.47 9.12 16 11 C -0.13 -4.07 6.60 31.78 0.21 -3.86 16 12 C 0.15 4.89 3.42 46.38 0.16 5.05 16 13 H 0.08 3.18 7.53 -2.39 -0.02 3.16 16 14 N -0.69 -17.19 5.19 -439.94 -2.28 -19.48 16 15 C 0.58 16.58 7.69 86.45 0.66 17.24 16 16 O -0.54 -20.51 12.75 -4.31 -0.05 -20.57 16 17 C -0.27 -5.79 6.44 23.88 0.15 -5.64 16 18 S 0.33 2.77 22.38 -56.49 -1.26 1.50 16 19 C 0.05 0.37 12.22 130.60 1.60 1.97 16 20 N -0.47 -8.83 10.11 -190.40 -1.92 -10.75 16 21 C 0.03 0.82 6.20 42.09 0.26 1.08 16 22 C 0.54 15.86 2.79 71.24 0.20 16.06 16 23 F -0.17 -5.66 15.93 44.97 0.72 -4.94 16 24 F -0.17 -4.66 17.01 44.97 0.76 -3.90 16 25 F -0.17 -5.47 15.56 44.97 0.70 -4.77 16 26 C 0.13 5.31 6.93 86.85 0.60 5.91 16 27 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.01 0.73 7.38 -2.39 -0.02 0.72 16 29 H 0.02 1.06 7.51 -2.38 -0.02 1.04 16 30 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.10 2.47 8.00 -2.39 -0.02 2.45 16 32 H 0.41 7.01 7.77 -92.71 -0.72 6.29 16 33 H 0.27 -0.78 8.06 -2.91 -0.02 -0.80 16 34 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -78.46 323.75 2.65 -75.81 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: 0.45 Total: -1.12 kcal Atomic # 6 Polarization: 25.04 SS G_CDS: 5.64 Total: 30.67 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -6.33 Total: -120.69 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 9 Polarization: -15.79 SS G_CDS: 2.18 Total: -13.60 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.26 Total: 1.50 kcal Total: -78.46 2.65 -75.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014766554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.954 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds