Wall clock time and date at job start Tue Mar 31 2020 18:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00007 * 2 1 4 4 H 1.48500 * 109.47355 * 274.90987 * 3 2 1 5 5 H 1.48505 * 109.47382 * 34.91014 * 3 2 1 6 6 H 1.48506 * 109.47537 * 154.90928 * 3 2 1 7 7 C 1.38815 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00343 * 166.69712 * 7 2 1 9 9 N 1.36941 * 119.99829 * 346.70334 * 7 2 1 10 10 C 1.47022 * 125.64972 * 7.94214 * 9 7 2 11 11 C 1.54316 * 107.27160 * 178.99119 * 10 9 7 12 12 C 1.55149 * 102.94477 * 337.80937 * 11 10 9 13 13 H 1.08997 * 111.01085 * 153.61448 * 12 11 10 14 14 N 1.46501 * 111.00346 * 277.42895 * 12 11 10 15 15 C 1.34781 * 120.00079 * 204.72033 * 14 12 11 16 16 O 1.21638 * 119.99890 * 0.27887 * 15 14 12 17 17 C 1.47260 * 120.00184 * 180.27500 * 15 14 12 18 18 N 1.33570 * 123.14198 * 285.55757 * 17 15 14 19 19 C 1.28645 * 115.76332 * 179.97438 * 18 17 15 20 20 S 1.70767 * 110.56424 * 0.02562 * 19 18 17 21 21 C 1.35208 * 123.14530 * 105.26826 * 17 15 14 22 22 C 1.50703 * 125.57945 * 0.02562 * 21 17 15 23 23 F 1.39902 * 109.47268 * 57.77337 * 22 21 17 24 24 F 1.39901 * 109.46739 * 177.76520 * 22 21 17 25 25 F 1.39891 * 109.47360 * 297.76645 * 22 21 17 26 26 C 1.47423 * 125.64870 * 188.00627 * 9 7 2 27 27 H 0.96999 * 119.99982 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.88232 * 59.56979 * 10 9 7 29 29 H 1.09003 * 109.88507 * 298.40922 * 10 9 7 30 30 H 1.09007 * 110.72379 * 219.44386 * 11 10 9 31 31 H 1.09002 * 110.87586 * 96.24778 * 11 10 9 32 32 H 0.97003 * 120.00137 * 24.99941 * 14 12 11 33 33 H 1.08006 * 124.71620 * 180.02562 * 19 18 17 34 34 H 1.08995 * 110.37102 * 85.23696 * 26 9 7 35 35 H 1.09003 * 110.36280 * 322.91406 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3939 2.1063 -1.3949 5 1 1.5034 2.6205 0.8013 6 1 3.5958 1.4125 0.5937 7 6 2.0104 -1.2021 0.0005 8 1 3.0686 -1.2148 -0.2147 9 7 1.3532 -2.3721 0.2738 10 6 -0.1018 -2.5236 0.4200 11 6 -0.3816 -4.0157 0.6969 12 6 0.8812 -4.7170 0.1305 13 1 1.0606 -5.6662 0.6353 14 7 0.7704 -4.9084 -1.3177 15 6 1.4659 -5.8918 -1.9227 16 8 2.1816 -6.6235 -1.2655 17 6 1.3593 -6.0803 -3.3793 18 7 0.2889 -6.6188 -3.9695 19 6 0.3466 -6.7160 -5.2509 20 16 1.8312 -6.1046 -5.8326 21 6 2.3334 -5.7195 -4.2447 22 6 3.6481 -5.0848 -3.8703 23 9 4.3315 -5.9190 -2.9790 24 9 4.4211 -4.8997 -5.0215 25 9 3.4121 -3.8469 -3.2629 26 6 1.9878 -3.6880 0.4715 27 1 -0.4850 0.8400 0.0004 28 1 -0.6007 -2.2173 -0.4995 29 1 -0.4556 -1.9190 1.2551 30 1 -1.2758 -4.3453 0.1677 31 1 -0.4783 -4.2008 1.7667 32 1 0.1997 -4.3249 -1.8419 33 1 -0.4352 -7.1271 -5.8725 34 1 2.3070 -3.8035 1.5072 35 1 2.8359 -3.8053 -0.2031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015256096.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:44 Heat of formation + Delta-G solvation = -125.266771 kcal Electronic energy + Delta-G solvation = -27625.210887 eV Core-core repulsion = 23142.555120 eV Total energy + Delta-G solvation = -4482.655767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -51.42406 -48.96670 -48.88996 -41.86830 -40.28969 -38.79105 -35.52101 -33.77770 -33.08820 -31.08106 -29.40669 -28.25709 -26.46330 -25.57569 -24.24966 -22.04715 -21.63879 -21.31996 -20.67960 -19.76839 -19.71130 -18.86579 -18.45135 -17.90406 -17.41134 -16.69468 -16.22482 -16.12198 -15.81691 -15.68968 -15.66949 -15.42309 -15.32051 -15.27580 -15.04173 -15.02079 -14.93694 -14.07018 -13.88204 -13.72001 -13.59863 -13.28241 -12.99671 -12.77809 -12.37080 -12.23778 -12.03798 -11.82523 -11.64211 -11.41513 -11.23378 -11.09541 -10.67490 -10.29910 -10.22623 -8.86475 -7.89662 -5.19187 -1.01294 -0.23631 0.22271 0.97616 1.29178 1.33393 1.43920 1.45770 1.55350 1.90821 2.36841 2.48462 2.82162 3.01343 3.10904 3.29713 3.62969 3.66896 3.70734 3.85679 4.02370 4.26746 4.51689 4.63181 4.68255 4.83767 4.91502 5.01321 5.38368 5.45657 5.64136 5.73834 6.09091 6.18014 6.25798 6.85205 7.10271 7.75833 8.41000 9.21779 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.004424 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.753194 B = 6327.157244 C = 7093.429270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.618 5.618 10 C 0.182 3.818 11 C -0.131 4.131 12 C 0.137 3.863 13 H 0.110 0.890 14 N -0.679 5.679 15 C 0.582 3.418 16 O -0.549 6.549 17 C 0.086 3.914 18 N -0.466 5.466 19 C 0.035 3.965 20 S 0.378 5.622 21 C -0.382 4.382 22 C 0.541 3.459 23 F -0.170 7.170 24 F -0.162 7.162 25 F -0.174 7.174 26 C 0.123 3.877 27 H 0.249 0.751 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.408 0.592 33 H 0.268 0.732 34 H 0.039 0.961 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -15.366 -15.112 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.345 5.345 10 C 0.057 3.943 11 C -0.169 4.169 12 C 0.031 3.969 13 H 0.128 0.872 14 N -0.328 5.328 15 C 0.364 3.636 16 O -0.427 6.427 17 C -0.057 4.057 18 N -0.181 5.181 19 C -0.261 4.261 20 S 0.638 5.362 21 C -0.507 4.507 22 C 0.485 3.515 23 F -0.151 7.151 24 F -0.143 7.143 25 F -0.156 7.156 26 C -0.003 4.003 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.244 0.756 33 H 0.283 0.717 34 H 0.057 0.943 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.064 -15.768 -15.394 22.037 hybrid contribution 0.547 1.756 1.089 2.137 sum 0.483 -14.013 -14.305 20.031 Atomic orbital electron populations 1.70161 1.05998 1.25403 1.57250 1.25491 0.96470 1.00368 1.02408 0.85262 0.77976 0.79987 0.77333 1.21425 1.21594 1.20008 1.19244 0.92775 0.84430 1.40642 0.91239 1.44669 1.02809 1.03670 1.83340 1.20984 0.83694 0.91667 0.97945 1.23074 0.96531 0.94919 1.02380 1.22167 0.96703 0.98573 0.79409 0.87195 1.45743 1.45594 1.32145 1.09285 1.17421 0.79879 0.80926 0.85413 1.90832 1.39951 1.46847 1.65033 1.20133 0.90440 0.99651 0.95482 1.67239 1.23320 1.16937 1.10590 1.29697 1.03140 0.99820 0.93408 1.82594 1.08653 1.47665 0.97314 1.25848 1.01500 1.18102 1.05249 1.17127 0.83084 0.76224 0.75087 1.93281 1.81253 1.71505 1.69057 1.93219 1.77011 1.95327 1.48773 1.93325 1.94443 1.44058 1.83743 1.22048 0.94740 0.85589 0.97927 0.94212 0.96452 0.96882 0.88800 0.88439 0.75627 0.71651 0.94312 0.95760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.46 10.48 21.65 0.23 -55.23 16 2 C -0.05 -3.04 5.45 84.86 0.46 -2.58 16 3 Si 0.97 46.20 29.57 68.60 2.03 48.23 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.24 -13.83 10.24 84.03 0.86 -12.97 16 8 H 0.07 3.96 7.86 -2.91 -0.02 3.94 16 9 N -0.62 -31.77 3.39 -692.00 -2.35 -34.12 16 10 C 0.18 8.58 5.38 86.73 0.47 9.05 16 11 C -0.13 -4.46 6.55 31.78 0.21 -4.25 16 12 C 0.14 4.90 3.43 46.38 0.16 5.06 16 13 H 0.11 3.69 7.54 -2.39 -0.02 3.67 16 14 N -0.68 -23.79 5.18 -439.37 -2.28 -26.06 16 15 C 0.58 20.72 6.79 86.61 0.59 21.31 16 16 O -0.55 -22.45 16.11 -4.15 -0.07 -22.52 16 17 C 0.09 2.51 6.46 40.55 0.26 2.77 16 18 N -0.47 -10.79 10.68 -193.02 -2.06 -12.85 16 19 C 0.03 0.42 12.17 130.71 1.59 2.02 16 20 S 0.38 4.99 22.38 -56.49 -1.26 3.72 16 21 C -0.38 -9.90 5.80 24.99 0.14 -9.76 16 22 C 0.54 16.40 3.05 71.24 0.22 16.61 16 23 F -0.17 -5.78 16.38 44.97 0.74 -5.05 16 24 F -0.16 -4.11 16.80 44.97 0.76 -3.35 16 25 F -0.17 -6.39 17.18 44.97 0.77 -5.62 16 26 C 0.12 5.39 6.93 86.86 0.60 5.99 16 27 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.02 0.90 7.51 -2.39 -0.02 0.88 16 29 H 0.01 0.69 7.46 -2.39 -0.02 0.67 16 30 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 31 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.41 14.03 8.65 -92.71 -0.80 13.23 16 33 H 0.27 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.47 329.71 2.43 -73.03 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.37 Total: 6.57 kcal Atomic # 6 Polarization: 27.69 SS G_CDS: 5.56 Total: 33.25 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.46 Total: -128.26 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.07 Total: -22.52 kcal Atomic # 9 Polarization: -16.29 SS G_CDS: 2.26 Total: -14.02 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.26 Total: 3.72 kcal Total: -75.47 2.43 -73.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015256096.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.235 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds