Wall clock time and date at job start Tue Mar 31 2020 18:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48508 * 109.46682 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47302 * 300.00252 * 3 2 1 6 6 H 1.48499 * 109.47123 * 60.00781 * 3 2 1 7 7 C 1.38815 * 119.99399 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99335 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00466 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00334 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.77895 * 36.78635 * 10 9 7 12 12 C 1.55155 * 110.72438 * 160.02422 * 10 9 7 13 13 C 1.54907 * 101.58383 * 153.86514 * 12 10 9 14 14 N 1.47420 * 104.83524 * 322.99460 * 13 12 10 15 15 C 1.34775 * 125.65051 * 204.16394 * 14 13 12 16 16 O 1.21637 * 120.00093 * 179.97438 * 15 14 13 17 17 C 1.47269 * 120.00113 * 359.95558 * 15 14 13 18 18 C 1.35207 * 123.14274 * 179.73568 * 17 15 14 19 19 S 1.70941 * 108.82714 * 179.87136 * 18 17 15 20 20 C 1.70780 * 91.12817 * 0.32784 * 19 18 17 21 21 C 1.50692 * 124.72023 * 179.84532 * 20 19 18 22 22 F 1.39903 * 109.47183 * 269.95545 * 21 20 19 23 23 F 1.39905 * 109.47435 * 29.95360 * 21 20 19 24 24 F 1.39899 * 109.47386 * 149.95940 * 21 20 19 25 25 N 1.28649 * 110.55943 * 359.80425 * 20 19 18 26 26 C 1.47026 * 108.70428 * 24.12518 * 14 13 12 27 27 H 0.96998 * 119.99462 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99736 * 0.02562 * 9 7 2 29 29 H 1.09001 * 111.00015 * 35.79259 * 12 10 9 30 30 H 1.08994 * 111.03653 * 271.95957 * 12 10 9 31 31 H 1.08997 * 110.36783 * 204.15179 * 13 12 10 32 32 H 1.08999 * 110.36448 * 81.82920 * 13 12 10 33 33 H 1.07994 * 125.58338 * 359.97438 * 18 17 15 34 34 H 1.08998 * 109.88351 * 118.35702 * 26 14 13 35 35 H 1.08998 * 109.88379 * 239.52492 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 2.9585 -3.5840 0.6079 12 6 1.1516 -4.8144 0.4943 13 6 1.8009 -6.0373 -0.2003 14 7 2.2217 -5.5407 -1.5231 15 6 2.4051 -6.2964 -2.6239 16 8 2.7545 -5.7770 -3.6668 17 6 2.1828 -7.7509 -2.5640 18 6 2.3427 -8.5677 -3.6295 19 16 1.9948 -10.1718 -3.1522 20 6 1.6466 -9.6586 -1.5610 21 6 1.2213 -10.5701 -0.4389 22 9 -0.1739 -10.6729 -0.4250 23 9 1.7804 -11.8382 -0.6307 24 9 1.6623 -10.0456 0.7807 25 7 1.7989 -8.3857 -1.4533 26 6 2.4072 -4.0844 -1.4428 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 0.1232 -4.6759 0.1604 30 1 1.1983 -4.9107 1.5789 31 1 1.0734 -6.8414 -0.3108 32 1 2.6650 -6.3817 0.3679 33 1 2.6429 -8.2576 -4.6195 34 1 3.4437 -3.8300 -1.6640 35 1 1.7424 -3.5865 -2.1487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019610740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:58 Heat of formation + Delta-G solvation = -106.719099 kcal Electronic energy + Delta-G solvation = -26249.883781 eV Core-core repulsion = 21768.032301 eV Total energy + Delta-G solvation = -4481.851480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.65965 -48.22952 -48.08934 -40.98050 -39.07113 -37.29652 -34.14632 -32.05755 -31.51623 -29.58990 -28.26602 -27.69805 -25.42232 -23.80838 -22.80371 -21.71107 -20.43891 -20.01169 -19.05899 -18.85328 -18.52045 -18.00134 -17.28576 -16.44913 -16.13281 -15.66933 -15.24025 -15.05373 -14.87481 -14.56550 -14.49396 -14.33894 -14.26287 -14.24720 -13.84807 -13.46316 -13.31686 -13.17743 -12.76693 -12.74841 -12.28618 -11.93283 -11.59705 -11.16828 -10.87040 -10.76410 -10.58124 -10.43435 -10.20611 -10.06857 -9.94192 -9.74830 -9.69002 -9.01173 -8.37520 -7.08767 -5.83694 -3.14502 -0.27784 0.34270 0.84884 1.38136 1.82817 2.90144 3.12785 3.17350 3.41200 3.47243 3.49204 3.56732 3.78452 4.00231 4.54046 4.59304 4.63342 5.01262 5.07311 5.31647 5.41212 5.62321 5.72564 5.88351 6.05976 6.14439 6.32270 6.39444 6.48819 6.58158 6.70239 6.87985 7.64719 7.66471 8.15083 8.33875 9.45862 9.99263 10.34190 11.38421 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.002712 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.287372 B =10323.741741 C =11154.884086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.713 5.713 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.142 4.142 13 C 0.104 3.896 14 N -0.590 5.590 15 C 0.597 3.403 16 O -0.536 6.536 17 C 0.023 3.977 18 C -0.204 4.204 19 S 0.312 5.688 20 C -0.110 4.110 21 C 0.558 3.442 22 F -0.161 7.161 23 F -0.165 7.165 24 F -0.152 7.152 25 N -0.377 5.377 26 C 0.082 3.918 27 H 0.256 0.744 28 H 0.387 0.613 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.204 0.796 34 H 0.061 0.939 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -27.435 -3.726 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.059 3.941 11 H 0.085 0.915 12 C -0.181 4.181 13 C -0.019 4.019 14 N -0.321 5.321 15 C 0.381 3.619 16 O -0.414 6.414 17 C -0.114 4.114 18 C -0.347 4.347 19 S 0.567 5.433 20 C -0.387 4.387 21 C 0.500 3.500 22 F -0.142 7.142 23 F -0.146 7.146 24 F -0.133 7.133 25 N -0.094 5.094 26 C -0.043 4.043 27 H 0.066 0.934 28 H 0.222 0.778 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.221 0.779 34 H 0.080 0.920 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.131 -27.730 -4.227 28.225 hybrid contribution 0.202 1.825 0.100 1.839 sum 3.333 -25.905 -4.127 26.443 Atomic orbital electron populations 1.69676 1.05177 1.25800 1.57053 1.24781 0.95534 0.97870 1.02389 0.86098 0.78866 0.83877 0.77212 1.20418 1.21768 1.21771 1.19311 0.91169 0.83920 1.43499 0.90850 1.42387 1.05841 0.99424 1.87587 1.21223 0.94996 0.86435 0.91406 0.91537 1.23106 1.00181 0.94345 1.00491 1.22569 0.99620 0.97431 0.82319 1.48387 1.64372 1.09579 1.09755 1.16556 0.78972 0.82992 0.83369 1.90841 1.48783 1.72389 1.29420 1.20589 1.06199 0.97020 0.87554 1.27061 1.04160 0.97314 1.06116 1.82888 1.55281 1.04809 1.00282 1.26967 1.14773 0.96205 1.00799 1.16837 0.75402 0.77514 0.80298 1.93287 1.28442 1.95987 1.96469 1.93254 1.85195 1.41148 1.95036 1.93289 1.89075 1.86184 1.44793 1.66936 1.09161 1.04862 1.28477 1.23375 1.01472 0.76840 1.02615 0.93396 0.77826 0.90608 0.89919 0.89016 0.91444 0.77904 0.92033 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -6.75 9.98 -15.06 -0.15 -6.90 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.71 -17.43 5.18 -51.65 -0.27 -17.70 16 10 C 0.17 3.33 3.59 -66.10 -0.24 3.09 16 11 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 12 C -0.14 -2.26 6.69 -24.58 -0.16 -2.42 16 13 C 0.10 1.50 6.04 -2.53 -0.02 1.49 16 14 N -0.59 -9.92 3.33 -171.84 -0.57 -10.49 16 15 C 0.60 9.92 7.83 -12.59 -0.10 9.82 16 16 O -0.54 -10.34 17.04 5.24 0.09 -10.26 16 17 C 0.02 0.29 6.61 -84.52 -0.56 -0.26 16 18 C -0.20 -1.89 10.62 29.65 0.31 -1.58 16 19 S 0.31 2.03 22.57 -107.50 -2.43 -0.40 16 20 C -0.11 -1.04 6.71 -13.62 -0.09 -1.13 16 21 C 0.56 4.94 3.55 36.00 0.13 5.06 16 22 F -0.16 -1.47 17.30 2.25 0.04 -1.43 16 23 F -0.17 -1.25 16.98 2.25 0.04 -1.21 16 24 F -0.15 -1.55 17.21 2.25 0.04 -1.51 16 25 N -0.38 -4.54 7.21 -8.51 -0.06 -4.60 16 26 C 0.08 1.57 6.62 -3.06 -0.02 1.55 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.39 10.06 7.71 -40.82 -0.31 9.75 16 29 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.27 6.02 -51.93 -0.31 0.96 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.20 1.56 8.03 -52.49 -0.42 1.14 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.67 8.03 -51.93 -0.42 1.25 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -31.81 330.97 -6.54 -38.34 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.12 Total: 5.70 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.99 Total: 8.36 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.18 Total: -59.77 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.12 Total: -4.15 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.43 Total: -0.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.81 -6.54 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019610740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.374 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds