Wall clock time and date at job start Tue Mar 31 2020 18:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48508 * 109.46682 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47302 * 300.00252 * 3 2 1 6 6 H 1.48499 * 109.47123 * 60.00781 * 3 2 1 7 7 C 1.38815 * 119.99399 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99335 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00466 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00334 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.77895 * 36.78635 * 10 9 7 12 12 C 1.55155 * 110.72438 * 160.02422 * 10 9 7 13 13 C 1.54907 * 101.58383 * 153.86514 * 12 10 9 14 14 N 1.47420 * 104.83524 * 322.99460 * 13 12 10 15 15 C 1.34775 * 125.65051 * 204.16394 * 14 13 12 16 16 O 1.21637 * 120.00093 * 179.97438 * 15 14 13 17 17 C 1.47269 * 120.00113 * 359.95558 * 15 14 13 18 18 C 1.35207 * 123.14274 * 179.73568 * 17 15 14 19 19 S 1.70941 * 108.82714 * 179.87136 * 18 17 15 20 20 C 1.70780 * 91.12817 * 0.32784 * 19 18 17 21 21 C 1.50692 * 124.72023 * 179.84532 * 20 19 18 22 22 F 1.39903 * 109.47183 * 269.95545 * 21 20 19 23 23 F 1.39905 * 109.47435 * 29.95360 * 21 20 19 24 24 F 1.39899 * 109.47386 * 149.95940 * 21 20 19 25 25 N 1.28649 * 110.55943 * 359.80425 * 20 19 18 26 26 C 1.47026 * 108.70428 * 24.12518 * 14 13 12 27 27 H 0.96998 * 119.99462 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99736 * 0.02562 * 9 7 2 29 29 H 1.09001 * 111.00015 * 35.79259 * 12 10 9 30 30 H 1.08994 * 111.03653 * 271.95957 * 12 10 9 31 31 H 1.08997 * 110.36783 * 204.15179 * 13 12 10 32 32 H 1.08999 * 110.36448 * 81.82920 * 13 12 10 33 33 H 1.07994 * 125.58338 * 359.97438 * 18 17 15 34 34 H 1.08998 * 109.88351 * 118.35702 * 26 14 13 35 35 H 1.08998 * 109.88379 * 239.52492 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 2.9585 -3.5840 0.6079 12 6 1.1516 -4.8144 0.4943 13 6 1.8009 -6.0373 -0.2003 14 7 2.2217 -5.5407 -1.5231 15 6 2.4051 -6.2964 -2.6239 16 8 2.7545 -5.7770 -3.6668 17 6 2.1828 -7.7509 -2.5640 18 6 2.3427 -8.5677 -3.6295 19 16 1.9948 -10.1718 -3.1522 20 6 1.6466 -9.6586 -1.5610 21 6 1.2213 -10.5701 -0.4389 22 9 -0.1739 -10.6729 -0.4250 23 9 1.7804 -11.8382 -0.6307 24 9 1.6623 -10.0456 0.7807 25 7 1.7989 -8.3857 -1.4533 26 6 2.4072 -4.0844 -1.4428 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 0.1232 -4.6759 0.1604 30 1 1.1983 -4.9107 1.5789 31 1 1.0734 -6.8414 -0.3108 32 1 2.6650 -6.3817 0.3679 33 1 2.6429 -8.2576 -4.6195 34 1 3.4437 -3.8300 -1.6640 35 1 1.7424 -3.5865 -2.1487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019610740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:57 Heat of formation + Delta-G solvation = -128.126011 kcal Electronic energy + Delta-G solvation = -26250.812054 eV Core-core repulsion = 21768.032301 eV Total energy + Delta-G solvation = -4482.779753 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.33373 -48.87954 -48.79711 -41.96361 -40.25883 -38.71972 -35.97575 -33.43868 -32.75207 -31.15982 -29.53652 -28.69581 -26.75486 -25.34817 -24.12711 -22.71326 -21.60649 -21.18077 -19.98320 -19.73643 -19.22277 -19.20194 -18.87529 -17.66472 -17.35901 -16.87192 -16.58001 -16.07287 -15.76684 -15.62752 -15.35437 -15.23527 -15.16334 -15.11454 -14.95500 -14.93929 -14.83522 -14.27816 -14.10127 -13.74997 -13.50607 -13.30264 -13.09529 -12.92630 -12.61459 -12.45009 -12.10115 -11.78982 -11.74887 -11.44623 -11.15613 -11.07162 -10.99758 -10.42639 -9.74604 -9.12170 -7.98163 -5.28779 -0.99093 -0.30009 0.13518 0.42660 1.12650 1.47207 1.48244 1.58036 1.85998 2.01431 2.25092 2.54331 2.82151 3.10633 3.14583 3.33745 3.63551 3.69525 3.83917 3.90587 4.01320 4.28999 4.31728 4.37779 4.51955 4.73941 4.91932 4.98849 5.13656 5.18522 5.33420 5.50999 5.85225 6.23210 6.37006 6.86845 7.30235 8.00972 8.25279 9.25012 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.002712 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.287372 B =10323.741741 C =11154.884086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.725 5.725 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.131 4.131 13 C 0.115 3.885 14 N -0.596 5.596 15 C 0.593 3.407 16 O -0.574 6.574 17 C -0.008 4.008 18 C -0.203 4.203 19 S 0.434 5.566 20 C -0.134 4.134 21 C 0.562 3.438 22 F -0.163 7.163 23 F -0.155 7.155 24 F -0.162 7.162 25 N -0.401 5.401 26 C 0.094 3.906 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.217 0.783 34 H 0.054 0.946 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 -30.204 -3.915 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.364 5.364 10 C 0.056 3.944 11 H 0.092 0.908 12 C -0.170 4.170 13 C -0.007 4.007 14 N -0.327 5.327 15 C 0.380 3.620 16 O -0.455 6.455 17 C -0.144 4.144 18 C -0.346 4.346 19 S 0.690 5.310 20 C -0.411 4.411 21 C 0.504 3.496 22 F -0.144 7.144 23 F -0.137 7.137 24 F -0.143 7.143 25 N -0.118 5.118 26 C -0.031 4.031 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.234 0.766 34 H 0.072 0.928 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.055 -30.577 -4.395 31.156 hybrid contribution -0.050 2.445 0.061 2.446 sum 4.006 -28.132 -4.334 28.744 Atomic orbital electron populations 1.69822 1.06622 1.26134 1.59130 1.25574 0.96368 1.01136 1.03321 0.85091 0.78342 0.79807 0.76613 1.18947 1.22322 1.21781 1.19686 0.91596 0.85027 1.41491 0.90313 1.42527 1.05499 1.00552 1.87787 1.21398 0.95663 0.85693 0.91598 0.90846 1.23048 0.98904 0.93191 1.01860 1.22613 1.00358 0.96723 0.81025 1.48423 1.64827 1.08414 1.11015 1.17100 0.77716 0.84732 0.82434 1.90802 1.50406 1.73721 1.30573 1.19991 1.09978 0.95084 0.89360 1.27399 1.02101 0.99175 1.05960 1.82553 1.51373 1.00799 0.96237 1.27143 1.15122 0.95869 1.02936 1.16760 0.75264 0.77708 0.79877 1.93284 1.28668 1.96018 1.96444 1.93274 1.85027 1.40423 1.94934 1.93269 1.89168 1.86395 1.45456 1.66786 1.10166 1.06131 1.28743 1.22904 1.00061 0.78788 1.01393 0.93919 0.79107 0.91561 0.87796 0.87873 0.89835 0.76641 0.92753 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -13.58 9.98 84.04 0.84 -12.74 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.72 -36.26 5.18 -317.33 -1.64 -37.90 16 10 C 0.17 6.54 3.59 46.18 0.17 6.70 16 11 H 0.07 2.79 8.12 -2.39 -0.02 2.77 16 12 C -0.13 -4.09 6.69 31.98 0.21 -3.88 16 13 C 0.11 3.21 6.04 86.86 0.52 3.74 16 14 N -0.60 -20.22 3.33 -815.83 -2.71 -22.93 16 15 C 0.59 19.84 7.83 86.62 0.68 20.52 16 16 O -0.57 -22.68 17.04 -4.15 -0.07 -22.75 16 17 C -0.01 -0.18 6.61 40.56 0.27 0.09 16 18 C -0.20 -3.26 10.62 67.12 0.71 -2.55 16 19 S 0.43 3.95 22.57 -56.49 -1.27 2.68 16 20 C -0.13 -2.18 6.71 88.57 0.59 -1.59 16 21 C 0.56 8.59 3.55 71.23 0.25 8.84 16 22 F -0.16 -2.63 17.30 44.97 0.78 -1.85 16 23 F -0.16 -1.88 16.98 44.97 0.76 -1.11 16 24 F -0.16 -2.99 17.21 44.97 0.77 -2.22 16 25 N -0.40 -8.92 7.21 -180.83 -1.30 -10.23 16 26 C 0.09 3.75 6.62 86.73 0.57 4.32 16 27 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.38 20.22 7.71 -92.70 -0.72 19.51 16 29 H 0.07 2.21 8.00 -2.39 -0.02 2.19 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.79 16 31 H 0.10 2.73 6.02 -2.39 -0.01 2.72 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.22 2.80 8.03 -2.91 -0.02 2.78 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.04 1.96 8.03 -2.39 -0.02 1.94 16 Total: -1.00 -70.82 330.97 3.37 -67.46 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.46 Total: 19.58 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 5.29 Total: 19.82 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.38 Total: -129.84 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.75 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 2.32 Total: -5.18 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.27 Total: 2.68 kcal Total: -70.82 3.37 -67.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019610740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.671 kcal (2) G-P(sol) polarization free energy of solvation -70.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds