Wall clock time and date at job start Tue Mar 31 2020 18:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00286 * 2 1 4 4 H 1.48497 * 109.47581 * 270.00282 * 3 2 1 5 5 H 1.48502 * 109.47054 * 30.00416 * 3 2 1 6 6 H 1.48501 * 109.47174 * 150.00059 * 3 2 1 7 7 C 1.38811 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99752 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00514 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00206 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.90773 * 336.25830 * 10 9 7 12 12 C 1.53956 * 113.66392 * 107.55271 * 10 9 7 13 13 C 1.53781 * 87.11200 * 139.89470 * 12 10 9 14 14 H 1.09001 * 113.61204 * 220.09063 * 13 12 10 15 15 N 1.46500 * 113.61879 * 89.18736 * 13 12 10 16 16 C 1.34774 * 119.99858 * 107.50173 * 15 13 12 17 17 O 1.21689 * 120.00132 * 0.02562 * 16 15 13 18 18 C 1.46682 * 119.99619 * 180.02562 * 16 15 13 19 19 S 1.76214 * 126.13248 * 354.40567 * 18 16 15 20 20 C 1.70958 * 90.31432 * 179.97438 * 19 18 16 21 21 N 1.29427 * 110.38745 * 359.97438 * 20 19 18 22 22 C 1.30941 * 117.36769 * 359.71291 * 21 20 19 23 23 C 1.50702 * 122.90409 * 180.34699 * 22 21 20 24 24 F 1.39899 * 109.46942 * 244.06386 * 23 22 21 25 25 F 1.39898 * 109.47425 * 4.06523 * 23 22 21 26 26 F 1.39897 * 109.46965 * 124.06561 * 23 22 21 27 27 C 1.53779 * 87.07982 * 334.63880 * 13 12 10 28 28 H 0.97006 * 119.99571 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00129 * 0.02562 * 9 7 2 30 30 H 1.09000 * 113.54277 * 25.33809 * 12 10 9 31 31 H 1.09003 * 113.74745 * 254.47312 * 12 10 9 32 32 H 0.96999 * 119.99850 * 287.50537 * 15 13 12 33 33 H 1.08001 * 124.80219 * 179.97438 * 20 19 18 34 34 H 1.09000 * 113.61831 * 139.98281 * 27 13 12 35 35 H 1.09002 * 113.61367 * 270.80420 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5284 -3.2978 0.4036 12 6 4.7888 -2.7937 -1.3457 13 6 5.9868 -3.3086 -0.5305 14 1 6.9531 -3.0398 -0.9572 15 7 5.8926 -4.7282 -0.1814 16 6 6.6848 -5.6277 -0.7977 17 8 7.4787 -5.2605 -1.6437 18 6 6.5901 -7.0492 -0.4485 19 16 5.6052 -7.7394 0.8394 20 6 6.1602 -9.3056 0.4373 21 7 6.9864 -9.2496 -0.5573 22 6 7.2394 -8.0690 -1.0640 23 6 8.1746 -7.8606 -2.2272 24 9 9.2726 -7.0996 -1.8121 25 9 8.6181 -9.1014 -2.6972 26 9 7.5013 -7.1873 -3.2521 27 6 5.5262 -2.3659 0.5938 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 5.0143 -1.9102 -1.9429 31 1 4.2822 -3.5721 -1.9164 32 1 5.2600 -5.0209 0.4932 33 1 5.8634 -10.2132 0.9420 34 1 5.6140 -2.7990 1.5902 35 1 5.9544 -1.3657 0.5278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020250067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:28 Heat of formation + Delta-G solvation = -89.819364 kcal Electronic energy + Delta-G solvation = -26301.481728 eV Core-core repulsion = 21820.363076 eV Total energy + Delta-G solvation = -4481.118652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.19652 -47.71834 -47.65380 -40.87764 -39.91396 -38.14783 -34.36431 -32.93135 -31.82001 -30.54524 -28.05554 -25.36248 -25.25335 -24.85433 -22.82508 -21.82218 -20.64836 -19.80833 -19.38799 -18.59460 -18.42934 -17.61921 -17.27720 -17.09108 -16.18430 -15.79171 -15.35187 -15.02186 -14.61393 -14.47263 -14.46553 -14.41679 -14.17056 -14.03715 -13.80499 -13.75718 -13.40139 -13.26824 -12.74230 -12.38922 -12.32444 -12.11542 -12.05103 -11.09430 -10.99015 -10.71167 -10.54737 -10.33275 -10.28021 -10.27061 -10.01885 -9.93779 -9.65786 -9.15584 -8.97305 -7.37068 -5.86397 -3.22948 -0.56911 0.35250 0.76119 1.59605 2.31036 2.60726 2.69882 3.25662 3.31222 3.34373 3.40102 3.71176 4.09541 4.23326 4.32224 4.50754 4.50865 4.76322 4.94083 4.95060 5.14572 5.31383 5.56732 5.65567 5.76869 5.98451 6.06402 6.19371 6.37150 6.44914 6.68377 6.79968 7.13311 7.77069 7.88291 8.32835 9.09980 9.82542 10.01543 11.31545 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002744 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.352281 B =10201.907423 C =10865.922658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.091 0.909 9 N -0.735 5.735 10 C 0.172 3.828 11 H 0.082 0.918 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.104 0.896 15 N -0.693 5.693 16 C 0.585 3.415 17 O -0.502 6.502 18 C -0.235 4.235 19 S 0.240 5.760 20 C 0.031 3.969 21 N -0.443 5.443 22 C 0.041 3.959 23 C 0.550 3.450 24 F -0.158 7.158 25 F -0.167 7.167 26 F -0.157 7.157 27 C -0.161 4.161 28 H 0.261 0.739 29 H 0.364 0.636 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.219 0.781 34 H 0.069 0.931 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.241 -19.494 3.108 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.109 0.891 9 N -0.375 5.375 10 C 0.060 3.940 11 H 0.100 0.900 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.122 0.878 15 N -0.344 5.344 16 C 0.368 3.632 17 O -0.378 6.378 18 C -0.362 4.362 19 S 0.498 5.502 20 C -0.264 4.264 21 N -0.155 5.155 22 C -0.101 4.101 23 C 0.493 3.507 24 F -0.140 7.140 25 F -0.149 7.149 26 F -0.138 7.138 27 C -0.201 4.201 28 H 0.071 0.929 29 H 0.197 0.803 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.235 0.765 33 H 0.236 0.764 34 H 0.087 0.913 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.036 -19.386 3.115 24.731 hybrid contribution 0.800 1.003 -0.473 1.367 sum 15.837 -18.383 2.642 24.407 Atomic orbital electron populations 1.69700 1.05166 1.26005 1.56918 1.24700 0.95260 0.97337 1.01630 0.86552 0.79201 0.84867 0.77898 1.20953 1.21655 1.20251 1.19109 0.80593 0.94789 1.43743 0.89149 1.42733 1.04148 1.01903 1.88683 1.21646 0.89419 0.90174 0.92778 0.90022 1.24339 0.96202 1.01049 1.00184 1.21921 1.00618 0.77914 0.98466 0.87790 1.45543 1.39602 1.07681 1.41534 1.16601 0.81810 0.82561 0.82213 1.90935 1.36692 1.78967 1.31228 1.25876 1.06349 0.99780 1.04179 1.84240 1.38252 1.00644 1.27094 1.28814 0.97302 1.03180 0.97113 1.65797 1.15291 1.24139 1.10254 1.20396 1.01515 0.88293 0.99858 1.16968 0.78701 0.74291 0.80776 1.93261 1.54586 1.76046 1.90058 1.93222 1.89969 1.42313 1.89373 1.93278 1.79915 1.80383 1.60198 1.23903 0.99366 0.99398 0.97459 0.92930 0.80301 0.89265 0.91752 0.76548 0.76430 0.91271 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.35 27.73 -169.99 -4.71 16.64 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 7 C -0.25 -6.80 10.45 -15.06 -0.16 -6.96 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 9 N -0.74 -16.26 5.21 -52.55 -0.27 -16.54 16 10 C 0.17 2.93 4.37 -67.03 -0.29 2.64 16 11 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 12 C -0.18 -2.75 7.68 -25.83 -0.20 -2.94 16 13 C 0.12 1.52 4.32 -67.12 -0.29 1.23 16 14 H 0.10 1.42 7.46 -51.93 -0.39 1.03 16 15 N -0.69 -7.98 5.26 -54.32 -0.29 -8.27 16 16 C 0.59 7.56 7.69 -12.85 -0.10 7.46 16 17 O -0.50 -8.05 12.72 5.20 0.07 -7.98 16 18 C -0.24 -2.52 6.44 -37.10 -0.24 -2.76 16 19 S 0.24 1.46 22.37 -107.50 -2.40 -0.94 16 20 C 0.03 0.19 12.22 51.75 0.63 0.82 16 21 N -0.44 -4.44 10.11 -11.53 -0.12 -4.56 16 22 C 0.04 0.48 6.20 -83.89 -0.52 -0.04 16 23 C 0.55 7.30 2.79 36.01 0.10 7.40 16 24 F -0.16 -2.23 15.93 2.25 0.04 -2.19 16 25 F -0.17 -2.14 17.01 2.25 0.04 -2.10 16 26 F -0.16 -2.28 15.56 2.25 0.04 -2.25 16 27 C -0.16 -2.16 7.57 -25.92 -0.20 -2.36 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.36 7.92 5.78 -40.82 -0.24 7.68 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 3.71 7.90 -40.82 -0.32 3.39 16 33 H 0.22 0.34 8.06 -52.49 -0.42 -0.08 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -33.75 328.06 -6.33 -40.08 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.07 Total: 6.24 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.36 Total: 4.59 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.10 Total: -57.02 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.07 Total: -7.98 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.11 Total: -6.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.40 Total: -0.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.75 -6.33 -40.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020250067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.741 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds