Wall clock time and date at job start Tue Mar 31 2020 18:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00286 * 2 1 4 4 H 1.48497 * 109.47581 * 270.00282 * 3 2 1 5 5 H 1.48502 * 109.47054 * 30.00416 * 3 2 1 6 6 H 1.48501 * 109.47174 * 150.00059 * 3 2 1 7 7 C 1.38811 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99752 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00514 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00206 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.90773 * 336.25830 * 10 9 7 12 12 C 1.53956 * 113.66392 * 107.55271 * 10 9 7 13 13 C 1.53781 * 87.11200 * 139.89470 * 12 10 9 14 14 H 1.09001 * 113.61204 * 220.09063 * 13 12 10 15 15 N 1.46500 * 113.61879 * 89.18736 * 13 12 10 16 16 C 1.34774 * 119.99858 * 107.50173 * 15 13 12 17 17 O 1.21689 * 120.00132 * 0.02562 * 16 15 13 18 18 C 1.46682 * 119.99619 * 180.02562 * 16 15 13 19 19 S 1.76214 * 126.13248 * 354.40567 * 18 16 15 20 20 C 1.70958 * 90.31432 * 179.97438 * 19 18 16 21 21 N 1.29427 * 110.38745 * 359.97438 * 20 19 18 22 22 C 1.30941 * 117.36769 * 359.71291 * 21 20 19 23 23 C 1.50702 * 122.90409 * 180.34699 * 22 21 20 24 24 F 1.39899 * 109.46942 * 244.06386 * 23 22 21 25 25 F 1.39898 * 109.47425 * 4.06523 * 23 22 21 26 26 F 1.39897 * 109.46965 * 124.06561 * 23 22 21 27 27 C 1.53779 * 87.07982 * 334.63880 * 13 12 10 28 28 H 0.97006 * 119.99571 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00129 * 0.02562 * 9 7 2 30 30 H 1.09000 * 113.54277 * 25.33809 * 12 10 9 31 31 H 1.09003 * 113.74745 * 254.47312 * 12 10 9 32 32 H 0.96999 * 119.99850 * 287.50537 * 15 13 12 33 33 H 1.08001 * 124.80219 * 179.97438 * 20 19 18 34 34 H 1.09000 * 113.61831 * 139.98281 * 27 13 12 35 35 H 1.09002 * 113.61367 * 270.80420 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5284 -3.2978 0.4036 12 6 4.7888 -2.7937 -1.3457 13 6 5.9868 -3.3086 -0.5305 14 1 6.9531 -3.0398 -0.9572 15 7 5.8926 -4.7282 -0.1814 16 6 6.6848 -5.6277 -0.7977 17 8 7.4787 -5.2605 -1.6437 18 6 6.5901 -7.0492 -0.4485 19 16 5.6052 -7.7394 0.8394 20 6 6.1602 -9.3056 0.4373 21 7 6.9864 -9.2496 -0.5573 22 6 7.2394 -8.0690 -1.0640 23 6 8.1746 -7.8606 -2.2272 24 9 9.2726 -7.0996 -1.8121 25 9 8.6181 -9.1014 -2.6972 26 9 7.5013 -7.1873 -3.2521 27 6 5.5262 -2.3659 0.5938 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 5.0143 -1.9102 -1.9429 31 1 4.2822 -3.5721 -1.9164 32 1 5.2600 -5.0209 0.4932 33 1 5.8634 -10.2132 0.9420 34 1 5.6140 -2.7990 1.5902 35 1 5.9544 -1.3657 0.5278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020250067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:27 Heat of formation + Delta-G solvation = -114.909745 kcal Electronic energy + Delta-G solvation = -26302.569728 eV Core-core repulsion = 21820.363076 eV Total energy + Delta-G solvation = -4482.206653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.21553 -48.73136 -48.70592 -41.71689 -40.85845 -39.31901 -35.92488 -34.37031 -32.82152 -32.20749 -28.92961 -26.59502 -26.41720 -25.97625 -24.13878 -23.11590 -21.51032 -20.74330 -20.62820 -19.61948 -19.58368 -19.27205 -18.16417 -17.94836 -17.19622 -16.70721 -16.59833 -16.23001 -16.02992 -15.54128 -15.49076 -15.33173 -15.18846 -15.08189 -14.90259 -14.85937 -14.77474 -14.41689 -14.12383 -14.02219 -13.68811 -13.35578 -12.89734 -12.84837 -12.58136 -12.05288 -11.88536 -11.83233 -11.58846 -11.27871 -11.08576 -10.96967 -10.88661 -10.51016 -10.20948 -9.27584 -8.01412 -5.34571 -1.25072 -0.26974 0.19684 0.92510 1.40103 1.43379 1.44604 1.50358 1.66556 1.77282 2.38680 2.49995 2.85197 3.23460 3.28746 3.38103 3.56298 3.59160 3.70499 3.73796 3.78390 4.22389 4.25366 4.46134 4.63673 4.86405 4.88573 5.03619 5.13733 5.16869 5.55040 5.78585 6.05973 6.21220 6.23670 6.84315 7.09271 7.86151 8.04072 9.19859 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.002744 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.352281 B =10201.907423 C =10865.922658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.246 1.246 7 C -0.233 4.233 8 H 0.060 0.940 9 N -0.741 5.741 10 C 0.153 3.847 11 H 0.083 0.917 12 C -0.175 4.175 13 C 0.131 3.869 14 H 0.104 0.896 15 N -0.685 5.685 16 C 0.585 3.415 17 O -0.541 6.541 18 C -0.271 4.271 19 S 0.321 5.679 20 C 0.047 3.953 21 N -0.475 5.475 22 C 0.033 3.967 23 C 0.542 3.458 24 F -0.168 7.168 25 F -0.169 7.169 26 F -0.170 7.170 27 C -0.140 4.140 28 H 0.257 0.743 29 H 0.367 0.633 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.412 0.588 33 H 0.265 0.735 34 H 0.094 0.906 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.443 -20.461 5.062 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.780 3.220 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.170 1.170 7 C -0.364 4.364 8 H 0.078 0.922 9 N -0.382 5.382 10 C 0.044 3.956 11 H 0.101 0.899 12 C -0.217 4.217 13 C 0.026 3.974 14 H 0.122 0.878 15 N -0.336 5.336 16 C 0.370 3.630 17 O -0.420 6.420 18 C -0.398 4.398 19 S 0.580 5.420 20 C -0.247 4.247 21 N -0.187 5.187 22 C -0.110 4.110 23 C 0.485 3.515 24 F -0.149 7.149 25 F -0.150 7.150 26 F -0.151 7.151 27 C -0.179 4.179 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.249 0.751 33 H 0.281 0.719 34 H 0.112 0.888 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.280 -20.407 5.109 26.601 hybrid contribution 0.379 1.096 -1.050 1.564 sum 16.659 -19.311 4.060 25.825 Atomic orbital electron populations 1.69880 1.07196 1.26628 1.59748 1.25507 0.96071 1.01280 1.02758 0.85448 0.78929 0.79748 0.77892 1.20979 1.22565 1.16994 1.19110 0.82783 0.93473 1.41008 0.92158 1.42743 1.02451 1.03960 1.89020 1.22021 0.90930 0.88312 0.94376 0.89867 1.24236 0.97266 1.00773 0.99423 1.21664 0.99363 0.78807 0.97602 0.87846 1.45416 1.39670 1.06932 1.41616 1.16880 0.81101 0.83577 0.81478 1.90909 1.38238 1.79946 1.32860 1.25729 1.08674 0.98484 1.06889 1.83981 1.35294 0.99203 1.23512 1.29651 0.94802 1.05008 0.95210 1.65829 1.17346 1.23460 1.12114 1.20183 1.01696 0.89430 0.99651 1.17277 0.78928 0.73943 0.81374 1.93228 1.55215 1.76367 1.90114 1.93206 1.90066 1.42217 1.89531 1.93238 1.80128 1.80739 1.61038 1.23730 0.95609 1.00053 0.98556 0.93433 0.79882 0.89887 0.92732 0.75118 0.71934 0.88791 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.63 13.97 21.65 0.30 -61.33 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.95 43.88 27.73 68.60 1.90 45.79 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -9.94 6.52 99.48 0.65 -9.29 16 7 C -0.23 -12.57 10.45 84.03 0.88 -11.69 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 9 N -0.74 -31.73 5.21 -320.17 -1.67 -33.40 16 10 C 0.15 4.95 4.37 45.58 0.20 5.15 16 11 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 12 C -0.18 -5.29 7.68 31.18 0.24 -5.05 16 13 C 0.13 3.18 4.32 45.52 0.20 3.38 16 14 H 0.10 2.64 7.46 -2.39 -0.02 2.63 16 15 N -0.69 -14.44 5.26 -444.01 -2.34 -16.77 16 16 C 0.59 14.53 7.69 86.45 0.66 15.19 16 17 O -0.54 -17.39 12.72 -4.31 -0.05 -17.45 16 18 C -0.27 -5.38 6.44 23.88 0.15 -5.22 16 19 S 0.32 2.76 22.37 -56.49 -1.26 1.49 16 20 C 0.05 0.38 12.22 130.60 1.60 1.98 16 21 N -0.48 -8.55 10.11 -190.40 -1.92 -10.48 16 22 C 0.03 0.76 6.20 42.09 0.26 1.02 16 23 C 0.54 14.65 2.79 71.24 0.20 14.85 16 24 F -0.17 -4.86 15.93 44.97 0.72 -4.15 16 25 F -0.17 -4.39 17.01 44.97 0.76 -3.63 16 26 F -0.17 -5.14 15.56 44.97 0.70 -4.44 16 27 C -0.14 -3.31 7.57 31.12 0.24 -3.08 16 28 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 29 H 0.37 15.10 5.78 -92.71 -0.54 14.56 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.41 6.49 7.90 -92.71 -0.73 5.76 16 33 H 0.27 -0.61 8.06 -2.91 -0.02 -0.64 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.10 2.33 8.12 -2.39 -0.02 2.31 16 Total: -1.00 -76.57 328.06 2.09 -74.48 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.14 Total: 16.57 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 5.09 Total: 13.30 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -5.62 Total: -121.97 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 9 Polarization: -14.40 SS G_CDS: 2.18 Total: -12.22 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.90 Total: 45.79 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.26 Total: 1.49 kcal Total: -76.57 2.09 -74.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020250067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.428 kcal (2) G-P(sol) polarization free energy of solvation -76.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds