Wall clock time and date at job start Tue Mar 31 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99890 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00497 * 3 2 1 7 7 C 1.38812 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85148 * 23.80543 * 10 9 7 12 12 C 1.53788 * 113.61455 * 154.99609 * 10 9 7 13 13 C 1.53784 * 87.07776 * 139.98236 * 12 10 9 14 14 H 1.09002 * 113.61578 * 89.12128 * 13 12 10 15 15 N 1.46505 * 113.61252 * 219.93485 * 13 12 10 16 16 C 1.34773 * 119.99855 * 204.99953 * 15 13 12 17 17 O 1.21639 * 120.00238 * 0.02562 * 16 15 13 18 18 C 1.47259 * 120.00096 * 179.97438 * 16 15 13 19 19 C 1.35211 * 123.14540 * 180.02562 * 18 16 15 20 20 S 1.70939 * 108.82917 * 179.97438 * 19 18 16 21 21 C 1.70773 * 91.13193 * 359.97438 * 20 19 18 22 22 C 1.50700 * 124.72385 * 179.97438 * 21 20 19 23 23 F 1.39907 * 109.47004 * 270.02908 * 22 21 20 24 24 F 1.39893 * 109.46944 * 30.02345 * 22 21 20 25 25 F 1.39898 * 109.46891 * 150.02790 * 22 21 20 26 26 N 1.28655 * 110.55717 * 359.77056 * 21 20 19 27 27 C 1.53775 * 113.61628 * 252.49687 * 10 9 7 28 28 H 0.97000 * 120.00284 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.08996 * 113.61620 * 254.52906 * 12 10 9 31 31 H 1.08999 * 113.61278 * 25.35000 * 12 10 9 32 32 H 0.96997 * 119.99886 * 25.00581 * 15 13 12 33 33 H 1.08000 * 125.58384 * 359.95865 * 19 18 16 34 34 H 1.09003 * 113.61460 * 334.56476 * 27 10 9 35 35 H 1.08997 * 113.61882 * 105.47170 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 3.0656 -3.5638 0.4049 12 6 1.2601 -4.8287 0.5951 13 6 1.8479 -5.6975 -0.5295 14 1 2.7985 -6.1635 -0.2698 15 7 0.8880 -6.6446 -1.1021 16 6 1.3263 -7.7718 -1.6967 17 8 2.5189 -8.0032 -1.7574 18 6 0.3614 -8.7241 -2.2718 19 6 0.7305 -9.8731 -2.8815 20 16 -0.6735 -10.6939 -3.4079 21 6 -1.6718 -9.4571 -2.7834 22 6 -3.1768 -9.4477 -2.8605 23 9 -3.5795 -8.8114 -4.0396 24 9 -3.6522 -10.7634 -2.8550 25 9 -3.6959 -8.7596 -1.7585 26 7 -0.9605 -8.5364 -2.2343 27 6 1.9991 -4.4021 -1.3443 28 1 -0.4850 -0.8400 -0.0004 29 1 0.3556 -2.3880 0.0002 30 1 1.5917 -5.1211 1.5913 31 1 0.1798 -4.6995 0.5294 32 1 -0.0631 -6.4602 -1.0534 33 1 1.7459 -10.2159 -3.0144 34 1 1.1207 -4.1569 -1.9414 35 1 2.9271 -4.3502 -1.9136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022933094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:45 Heat of formation + Delta-G solvation = -101.056919 kcal Electronic energy + Delta-G solvation = -25482.615170 eV Core-core repulsion = 21001.009220 eV Total energy + Delta-G solvation = -4481.605949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.71648 -48.28665 -48.14519 -41.06788 -39.44242 -37.94156 -34.39540 -32.97521 -32.07904 -29.66698 -28.15410 -26.04130 -25.24001 -24.00763 -22.90095 -21.73424 -20.64775 -20.07487 -19.22333 -19.11571 -18.57495 -18.04307 -17.49404 -16.93886 -16.13693 -15.85317 -15.18466 -15.12335 -14.99399 -14.75850 -14.61766 -14.33768 -14.30242 -14.27167 -14.21950 -13.84894 -13.64962 -13.23005 -13.01060 -12.65221 -12.33124 -12.03077 -11.08194 -10.91352 -10.78111 -10.74899 -10.55085 -10.53070 -10.35060 -10.14812 -9.96216 -9.83280 -9.18516 -8.96621 -8.86004 -7.07505 -6.13618 -3.14041 -0.39121 0.23071 0.73903 1.22308 1.74799 2.83689 2.97681 3.09018 3.48715 3.51282 3.54568 3.72043 3.72077 3.91208 4.50323 4.55152 4.66702 4.90169 5.07390 5.10548 5.25790 5.45929 5.73809 5.79981 5.97417 6.13570 6.19239 6.29868 6.48213 6.51598 6.59723 6.94426 7.44699 7.78525 8.00521 8.72049 9.17927 10.04401 10.18855 11.34421 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002413 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.008257 B =11599.340388 C =12735.344923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.082 0.918 12 C -0.160 4.160 13 C 0.116 3.884 14 H 0.113 0.887 15 N -0.691 5.691 16 C 0.592 3.408 17 O -0.534 6.534 18 C 0.014 3.986 19 C -0.204 4.204 20 S 0.319 5.681 21 C -0.105 4.105 22 C 0.557 3.443 23 F -0.160 7.160 24 F -0.164 7.164 25 F -0.152 7.152 26 N -0.383 5.383 27 C -0.176 4.176 28 H 0.255 0.745 29 H 0.369 0.631 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.409 0.591 33 H 0.205 0.795 34 H 0.079 0.921 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -27.507 -7.373 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.468 4.468 8 H 0.085 0.915 9 N -0.361 5.361 10 C 0.063 3.937 11 H 0.100 0.900 12 C -0.200 4.200 13 C 0.012 3.988 14 H 0.131 0.869 15 N -0.340 5.340 16 C 0.374 3.626 17 O -0.411 6.411 18 C -0.123 4.123 19 C -0.346 4.346 20 S 0.575 5.425 21 C -0.383 4.383 22 C 0.499 3.501 23 F -0.141 7.141 24 F -0.146 7.146 25 F -0.133 7.133 26 N -0.100 5.100 27 C -0.218 4.218 28 H 0.066 0.934 29 H 0.202 0.798 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.222 0.778 34 H 0.098 0.902 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.973 -26.364 -7.648 27.737 hybrid contribution -0.209 -0.979 0.315 1.049 sum -4.182 -27.343 -7.333 28.617 Atomic orbital electron populations 1.70890 1.06065 1.28448 1.53306 1.25813 0.97036 1.01118 1.00193 0.83240 0.74232 0.75528 0.75909 1.21015 1.22186 1.22204 1.20106 0.92146 0.85797 1.48728 0.91546 1.42367 1.04748 1.00750 1.88198 1.21276 0.95494 0.84441 0.92531 0.89963 1.23894 1.01266 0.97273 0.97541 1.22620 0.93150 0.87329 0.95724 0.86874 1.45925 1.11430 1.20261 1.56375 1.16926 0.86438 0.80843 0.78357 1.90834 1.15054 1.76192 1.59000 1.20604 0.88691 0.97504 1.05479 1.27096 1.07214 0.98453 1.01867 1.82942 0.92450 1.19026 1.48105 1.26877 0.99475 1.00883 1.11111 1.16837 0.83869 0.74329 0.75062 1.93293 1.91382 1.81926 1.47487 1.93255 1.89335 1.35684 1.96286 1.93294 1.87598 1.79353 1.53066 1.66659 1.04297 1.25718 1.13336 1.24344 1.02009 0.94832 1.00606 0.93386 0.79781 0.91207 0.89960 0.75484 0.77805 0.90229 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.14 13.70 55.49 0.76 -28.38 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.92 29.92 -169.99 -5.09 20.83 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.34 -9.45 9.97 -15.06 -0.15 -9.60 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.94 5.40 -52.64 -0.28 -18.23 16 10 C 0.18 3.45 4.48 -67.12 -0.30 3.15 16 11 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 12 C -0.16 -2.55 7.58 -25.91 -0.20 -2.75 16 13 C 0.12 1.76 4.24 -67.11 -0.28 1.48 16 14 H 0.11 1.72 7.46 -51.93 -0.39 1.34 16 15 N -0.69 -9.61 5.35 -54.13 -0.29 -9.90 16 16 C 0.59 8.30 7.80 -12.60 -0.10 8.20 16 17 O -0.53 -8.70 16.31 5.24 0.09 -8.61 16 18 C 0.01 0.16 6.70 -84.52 -0.57 -0.41 16 19 C -0.20 -1.64 10.62 29.65 0.31 -1.32 16 20 S 0.32 1.84 22.57 -107.50 -2.43 -0.58 16 21 C -0.11 -0.95 6.71 -13.61 -0.09 -1.04 16 22 C 0.56 4.90 3.55 36.01 0.13 5.03 16 23 F -0.16 -1.48 17.30 2.25 0.04 -1.44 16 24 F -0.16 -1.21 16.98 2.25 0.04 -1.17 16 25 F -0.15 -1.58 17.21 2.25 0.04 -1.54 16 26 N -0.38 -4.33 9.99 -8.51 -0.09 -4.41 16 27 C -0.18 -3.12 7.68 -25.92 -0.20 -3.32 16 28 H 0.25 7.74 6.77 -40.82 -0.28 7.46 16 29 H 0.37 9.41 6.75 -40.82 -0.28 9.14 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.41 5.34 8.25 -40.82 -0.34 5.01 16 33 H 0.20 1.28 8.03 -52.49 -0.42 0.86 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -33.19 336.60 -6.69 -39.88 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -3.01 Total: 10.45 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.54 Total: -1.96 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.10 Total: -60.92 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.12 Total: -4.15 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.09 Total: 20.83 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.43 Total: -0.58 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.19 -6.69 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022933094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.178 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds