Wall clock time and date at job start Tue Mar 31 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99890 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00497 * 3 2 1 7 7 C 1.38812 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85148 * 23.80543 * 10 9 7 12 12 C 1.53788 * 113.61455 * 154.99609 * 10 9 7 13 13 C 1.53784 * 87.07776 * 139.98236 * 12 10 9 14 14 H 1.09002 * 113.61578 * 89.12128 * 13 12 10 15 15 N 1.46505 * 113.61252 * 219.93485 * 13 12 10 16 16 C 1.34773 * 119.99855 * 204.99953 * 15 13 12 17 17 O 1.21639 * 120.00238 * 0.02562 * 16 15 13 18 18 C 1.47259 * 120.00096 * 179.97438 * 16 15 13 19 19 C 1.35211 * 123.14540 * 180.02562 * 18 16 15 20 20 S 1.70939 * 108.82917 * 179.97438 * 19 18 16 21 21 C 1.70773 * 91.13193 * 359.97438 * 20 19 18 22 22 C 1.50700 * 124.72385 * 179.97438 * 21 20 19 23 23 F 1.39907 * 109.47004 * 270.02908 * 22 21 20 24 24 F 1.39893 * 109.46944 * 30.02345 * 22 21 20 25 25 F 1.39898 * 109.46891 * 150.02790 * 22 21 20 26 26 N 1.28655 * 110.55717 * 359.77056 * 21 20 19 27 27 C 1.53775 * 113.61628 * 252.49687 * 10 9 7 28 28 H 0.97000 * 120.00284 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.08996 * 113.61620 * 254.52906 * 12 10 9 31 31 H 1.08999 * 113.61278 * 25.35000 * 12 10 9 32 32 H 0.96997 * 119.99886 * 25.00581 * 15 13 12 33 33 H 1.08000 * 125.58384 * 359.95865 * 19 18 16 34 34 H 1.09003 * 113.61460 * 334.56476 * 27 10 9 35 35 H 1.08997 * 113.61882 * 105.47170 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 3.0656 -3.5638 0.4049 12 6 1.2601 -4.8287 0.5951 13 6 1.8479 -5.6975 -0.5295 14 1 2.7985 -6.1635 -0.2698 15 7 0.8880 -6.6446 -1.1021 16 6 1.3263 -7.7718 -1.6967 17 8 2.5189 -8.0032 -1.7574 18 6 0.3614 -8.7241 -2.2718 19 6 0.7305 -9.8731 -2.8815 20 16 -0.6735 -10.6939 -3.4079 21 6 -1.6718 -9.4571 -2.7834 22 6 -3.1768 -9.4477 -2.8605 23 9 -3.5795 -8.8114 -4.0396 24 9 -3.6522 -10.7634 -2.8550 25 9 -3.6959 -8.7596 -1.7585 26 7 -0.9605 -8.5364 -2.2343 27 6 1.9991 -4.4021 -1.3443 28 1 -0.4850 -0.8400 -0.0004 29 1 0.3556 -2.3880 0.0002 30 1 1.5917 -5.1211 1.5913 31 1 0.1798 -4.6995 0.5294 32 1 -0.0631 -6.4602 -1.0534 33 1 1.7459 -10.2159 -3.0144 34 1 1.1207 -4.1569 -1.9414 35 1 2.9271 -4.3502 -1.9136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022933094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:44 Heat of formation + Delta-G solvation = -124.780170 kcal Electronic energy + Delta-G solvation = -25483.643887 eV Core-core repulsion = 21001.009220 eV Total energy + Delta-G solvation = -4482.634667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.39993 -48.94231 -48.87317 -41.93263 -40.58625 -39.22748 -36.16503 -34.45473 -32.82113 -31.58132 -28.84699 -27.10527 -26.66862 -25.79644 -24.08259 -22.91901 -21.52439 -21.09832 -20.42949 -19.80262 -19.48590 -19.24988 -18.85379 -17.90791 -17.37161 -16.81223 -16.65905 -16.02273 -15.83368 -15.74735 -15.63388 -15.47704 -15.30439 -15.21371 -15.04838 -15.01266 -14.98054 -14.54777 -13.92674 -13.80668 -13.46029 -13.28542 -12.90673 -12.68449 -12.27797 -12.19270 -11.91374 -11.84247 -11.46407 -11.37024 -11.18139 -11.15782 -10.88324 -10.50346 -10.11752 -9.12587 -8.40715 -5.34976 -1.02484 -0.34481 0.11452 0.38167 1.08007 1.58475 1.68316 1.84596 1.98636 2.01290 2.21513 2.71325 2.78194 3.04055 3.14227 3.35971 3.54703 3.69487 3.75860 3.82785 3.86452 4.05911 4.17455 4.33662 4.60556 4.74343 4.75757 4.97599 5.02476 5.21208 5.46923 5.60352 5.79303 6.36068 6.48185 6.92659 7.07125 7.97398 8.08971 9.11020 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002413 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.008257 B =11599.340388 C =12735.344923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.105 4.105 3 Si 1.128 2.872 4 H -0.294 1.294 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.336 4.336 8 H 0.069 0.931 9 N -0.737 5.737 10 C 0.156 3.844 11 H 0.083 0.917 12 C -0.143 4.143 13 C 0.137 3.863 14 H 0.119 0.881 15 N -0.692 5.692 16 C 0.593 3.407 17 O -0.561 6.561 18 C -0.016 4.016 19 C -0.201 4.201 20 S 0.434 5.566 21 C -0.135 4.135 22 C 0.559 3.441 23 F -0.164 7.164 24 F -0.154 7.154 25 F -0.165 7.165 26 N -0.411 5.411 27 C -0.170 4.170 28 H 0.244 0.756 29 H 0.361 0.639 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -29.823 -8.032 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.296 4.296 3 Si 0.952 3.048 4 H -0.220 1.220 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.467 4.467 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.046 3.954 11 H 0.101 0.899 12 C -0.182 4.182 13 C 0.032 3.968 14 H 0.137 0.863 15 N -0.340 5.340 16 C 0.377 3.623 17 O -0.441 6.441 18 C -0.153 4.153 19 C -0.344 4.344 20 S 0.690 5.310 21 C -0.412 4.412 22 C 0.501 3.499 23 F -0.145 7.145 24 F -0.136 7.136 25 F -0.146 7.146 26 N -0.128 5.128 27 C -0.212 4.212 28 H 0.054 0.946 29 H 0.194 0.806 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.250 0.750 33 H 0.239 0.761 34 H 0.084 0.916 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.282 -28.757 -8.315 30.114 hybrid contribution -0.418 -0.481 0.433 0.770 sum -3.700 -29.238 -7.882 30.507 Atomic orbital electron populations 1.70996 1.07204 1.27908 1.56236 1.27219 0.97116 1.04747 1.00511 0.82632 0.73386 0.71583 0.77186 1.21972 1.20171 1.20487 1.20467 0.92512 0.87082 1.46638 0.91292 1.42538 1.04585 1.01728 1.88773 1.21605 0.95767 0.83619 0.94401 0.89937 1.23698 1.00767 0.95132 0.98640 1.22285 0.93623 0.86699 0.94218 0.86315 1.45841 1.11332 1.20295 1.56578 1.17263 0.86649 0.80829 0.77558 1.90806 1.16299 1.76859 1.60101 1.20204 0.88508 0.98452 1.08152 1.27472 1.09451 0.97508 0.99924 1.82602 0.88881 1.15141 1.44374 1.27004 0.99731 1.02361 1.12109 1.16835 0.84015 0.74486 0.74533 1.93282 1.91477 1.82116 1.47659 1.93271 1.89254 1.34822 1.96215 1.93264 1.87857 1.79758 1.53758 1.66571 1.04481 1.27229 1.14545 1.24157 1.01302 0.96219 0.99503 0.94556 0.80635 0.89440 0.89974 0.75014 0.76086 0.91611 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.64 13.70 21.65 0.30 -61.35 16 2 C -0.10 -6.14 5.50 84.86 0.47 -5.67 16 3 Si 1.13 52.32 29.92 68.60 2.05 54.37 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.34 -18.99 9.97 84.03 0.84 -18.15 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.74 -37.27 5.40 -320.44 -1.73 -39.00 16 10 C 0.16 6.17 4.48 45.52 0.20 6.37 16 11 H 0.08 3.23 8.10 -2.38 -0.02 3.21 16 12 C -0.14 -4.46 7.58 31.12 0.24 -4.23 16 13 C 0.14 4.06 4.24 45.52 0.19 4.26 16 14 H 0.12 3.48 7.46 -2.39 -0.02 3.46 16 15 N -0.69 -18.96 5.35 -443.43 -2.37 -21.33 16 16 C 0.59 16.19 7.80 86.62 0.68 16.87 16 17 O -0.56 -17.83 16.31 -4.15 -0.07 -17.90 16 18 C -0.02 -0.35 6.70 40.55 0.27 -0.08 16 19 C -0.20 -2.70 10.62 67.12 0.71 -1.98 16 20 S 0.43 3.54 22.57 -56.49 -1.28 2.26 16 21 C -0.14 -2.22 6.71 88.57 0.59 -1.62 16 22 C 0.56 9.16 3.55 71.24 0.25 9.41 16 23 F -0.16 -2.88 17.30 44.97 0.78 -2.10 16 24 F -0.15 -1.97 16.98 44.97 0.76 -1.21 16 25 F -0.17 -3.38 17.21 44.97 0.77 -2.60 16 26 N -0.41 -8.90 9.99 -180.83 -1.81 -10.70 16 27 C -0.17 -6.05 7.68 31.12 0.24 -5.81 16 28 H 0.24 15.33 6.77 -92.71 -0.63 14.71 16 29 H 0.36 19.03 6.75 -92.71 -0.63 18.40 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.60 8.10 -2.39 -0.02 2.58 16 32 H 0.41 10.77 8.25 -92.71 -0.76 10.01 16 33 H 0.22 2.09 8.03 -2.91 -0.02 2.07 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -72.68 336.60 2.03 -70.65 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.06 Total: 29.55 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 4.68 Total: -0.64 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -5.61 Total: -132.38 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.07 Total: -17.90 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 2.32 Total: -5.91 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.05 Total: 54.37 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.28 Total: 2.26 kcal Total: -72.68 2.03 -70.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022933094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.132 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds