Wall clock time and date at job start Tue Mar 31 2020 18:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00472 * 2 1 4 4 H 1.48505 * 109.47255 * 85.07385 * 3 2 1 5 5 H 1.48491 * 109.47477 * 205.07935 * 3 2 1 6 6 H 1.48497 * 109.46784 * 325.07773 * 3 2 1 7 7 C 1.38815 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00147 * 191.72304 * 7 2 1 9 9 N 1.36935 * 120.00011 * 11.72029 * 7 2 1 10 10 C 1.47076 * 136.05476 * 12.55939 * 9 7 2 11 11 C 1.53753 * 87.88405 * 152.96370 * 10 9 7 12 12 C 1.53006 * 114.57642 * 272.66131 * 11 10 9 13 13 N 1.46499 * 109.47095 * 268.67505 * 12 11 10 14 14 C 1.34776 * 119.99541 * 179.97438 * 13 12 11 15 15 O 1.21629 * 120.00533 * 0.02562 * 14 13 12 16 16 C 1.47269 * 119.99646 * 179.97438 * 14 13 12 17 17 N 1.33556 * 123.14229 * 285.29862 * 16 14 13 18 18 C 1.28647 * 115.76492 * 179.97438 * 17 16 14 19 19 S 1.70769 * 110.56296 * 0.02562 * 18 17 16 20 20 C 1.35207 * 123.13776 * 105.01455 * 16 14 13 21 21 C 1.50697 * 125.59005 * 359.97438 * 20 16 14 22 22 F 1.39896 * 109.47303 * 63.05282 * 21 20 16 23 23 F 1.39900 * 109.47151 * 183.05563 * 21 20 16 24 24 F 1.39902 * 109.46807 * 303.05475 * 21 20 16 25 25 C 1.47066 * 136.06139 * 192.93174 * 9 7 2 26 26 H 0.97007 * 119.99800 * 359.97438 * 1 2 3 27 27 H 1.09000 * 113.46833 * 267.69557 * 10 9 7 28 28 H 1.09002 * 113.46314 * 38.13971 * 10 9 7 29 29 H 1.08998 * 114.08702 * 139.78332 * 11 10 9 30 30 H 1.09003 * 109.46581 * 28.67545 * 12 11 10 31 31 H 1.09003 * 109.46917 * 148.67580 * 12 11 10 32 32 H 0.96996 * 120.00516 * 359.97438 * 13 12 11 33 33 H 1.08004 * 124.72016 * 179.97438 * 18 17 16 34 34 H 1.09002 * 113.46471 * 321.86683 * 25 9 7 35 35 H 1.09003 * 113.46938 * 92.24339 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3937 2.1065 1.3949 5 1 3.5959 1.4123 -0.5934 6 1 1.5037 2.6203 -0.8015 7 6 2.0102 -1.2022 0.0005 8 1 3.0733 -1.2119 0.1906 9 7 1.3469 -2.3758 -0.2398 10 6 0.0193 -2.7577 -0.7445 11 6 0.6471 -4.0723 -1.2360 12 6 1.2569 -4.0012 -2.6375 13 7 0.2484 -4.3837 -3.6289 14 6 0.5619 -4.3939 -4.9396 15 8 1.6822 -4.0861 -5.2994 16 6 -0.4518 -4.7790 -5.9361 17 7 -0.8405 -6.0416 -6.1319 18 6 -1.7359 -6.2168 -7.0389 19 16 -2.1731 -4.7252 -7.7462 20 6 -1.0798 -3.8865 -6.7344 21 6 -0.8518 -2.3969 -6.7339 22 9 0.4690 -2.1271 -7.1079 23 9 -1.7266 -1.7909 -7.6420 24 9 -1.0861 -1.8898 -5.4513 25 6 1.6461 -3.8090 -0.1009 26 1 -0.4850 0.8401 0.0004 27 1 -0.7207 -2.8981 0.0435 28 1 -0.3390 -2.1178 -1.5509 29 1 0.0186 -4.9497 -1.0837 30 1 1.5939 -2.9838 -2.8359 31 1 2.1047 -4.6835 -2.6999 32 1 -0.6450 -4.6296 -3.3420 33 1 -2.1524 -7.1742 -7.3153 34 1 2.6738 -4.0648 -0.3589 35 1 1.3360 -4.2263 0.8572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031840952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:33 Heat of formation + Delta-G solvation = -71.353035 kcal Electronic energy + Delta-G solvation = -26874.565330 eV Core-core repulsion = 22394.247438 eV Total energy + Delta-G solvation = -4480.317892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.32542 -47.90105 -47.72681 -40.88024 -39.06322 -38.05453 -34.42011 -32.37215 -32.13707 -29.00693 -27.63209 -25.90866 -24.68897 -24.61877 -23.06017 -22.10290 -20.37892 -19.80195 -19.01520 -18.65300 -18.17543 -17.57091 -16.76772 -16.63670 -16.15559 -15.47101 -15.04314 -14.95495 -14.65944 -14.55517 -14.52339 -14.34284 -14.19985 -13.89747 -13.89486 -13.77676 -13.36546 -12.79426 -12.71943 -12.54854 -12.35646 -11.59682 -11.21857 -10.98991 -10.75439 -10.52407 -10.48116 -10.44431 -10.21241 -9.89511 -9.84430 -9.58978 -9.27723 -8.86730 -8.71349 -6.85768 -5.78742 -3.09539 -0.25813 0.44846 0.90151 1.80840 2.31594 2.41383 3.00623 3.38151 3.41295 3.47615 3.50041 3.86813 3.94191 4.11686 4.48740 4.51929 4.63002 5.13665 5.23131 5.27342 5.34501 5.54847 5.97980 6.06038 6.34502 6.43480 6.54194 6.59599 6.72928 6.79716 7.11933 7.22659 7.48413 7.52731 7.98313 8.09484 9.03657 9.71254 10.66559 11.39784 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.003679 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.070828 B = 7608.475953 C = 8674.921696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.289 1.289 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.606 5.606 10 C 0.167 3.833 11 C -0.163 4.163 12 C 0.149 3.851 13 N -0.697 5.697 14 C 0.580 3.420 15 O -0.509 6.509 16 C 0.103 3.897 17 N -0.436 5.436 18 C 0.019 3.981 19 S 0.292 5.708 20 C -0.351 4.351 21 C 0.547 3.453 22 F -0.155 7.155 23 F -0.172 7.172 24 F -0.156 7.156 25 C 0.125 3.875 26 H 0.254 0.746 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.218 0.782 34 H 0.043 0.957 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.045 -13.693 -17.391 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.215 1.215 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.332 5.332 10 C 0.041 3.959 11 C -0.183 4.183 12 C 0.027 3.973 13 N -0.347 5.347 14 C 0.360 3.640 15 O -0.383 6.383 16 C -0.038 4.038 17 N -0.150 5.150 18 C -0.278 4.278 19 S 0.550 5.450 20 C -0.475 4.475 21 C 0.490 3.510 22 F -0.136 7.136 23 F -0.153 7.153 24 F -0.137 7.137 25 C -0.001 4.001 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.237 0.763 33 H 0.234 0.766 34 H 0.061 0.939 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.674 -13.276 -18.089 24.057 hybrid contribution 0.495 1.122 0.991 1.577 sum -8.179 -12.154 -17.098 22.516 Atomic orbital electron populations 1.69880 1.05151 1.25497 1.55602 1.24863 0.95548 0.97814 1.01874 0.86165 0.79022 0.83527 0.77474 1.21585 1.20337 1.21549 1.18925 0.91095 0.81950 1.42958 0.90186 1.45807 1.13376 0.99408 1.74590 1.22035 0.89194 0.88836 0.95834 1.23305 1.00917 1.00186 0.93877 1.21174 0.89196 1.01874 0.85023 1.45920 1.16574 1.67131 1.05096 1.16993 0.86083 0.78798 0.82157 1.90908 1.20006 1.47584 1.79839 1.20508 0.97579 0.87536 0.98201 1.67225 1.12067 1.18461 1.17247 1.28859 0.97911 1.04511 0.96483 1.82933 1.32687 0.97221 1.32178 1.25767 1.11846 0.99232 1.10696 1.16885 0.75091 0.84164 0.74849 1.93323 1.34767 1.94383 1.91110 1.93216 1.69443 1.85113 1.67575 1.93341 1.94127 1.88201 1.38002 1.22367 0.96340 0.87352 0.94074 0.93654 0.94752 0.92904 0.90755 0.89484 0.91436 0.76304 0.76571 0.93912 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 12.25 55.49 0.68 -26.91 16 2 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 3 Si 0.91 22.60 29.57 -169.99 -5.03 17.57 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.22 -6.30 10.71 -15.06 -0.16 -6.46 16 8 H 0.08 2.20 7.86 -52.49 -0.41 1.79 16 9 N -0.61 -15.48 3.57 -184.58 -0.66 -16.14 16 10 C 0.17 3.82 6.70 -8.36 -0.06 3.76 16 11 C -0.16 -2.88 4.17 -89.97 -0.37 -3.25 16 12 C 0.15 2.64 5.52 -4.04 -0.02 2.61 16 13 N -0.70 -10.81 5.55 -61.43 -0.34 -11.15 16 14 C 0.58 9.69 6.70 -12.59 -0.08 9.60 16 15 O -0.51 -10.29 16.82 5.25 0.09 -10.20 16 16 C 0.10 1.40 6.46 -84.53 -0.55 0.85 16 17 N -0.44 -4.88 10.68 -12.36 -0.13 -5.01 16 18 C 0.02 0.13 12.17 51.43 0.63 0.76 16 19 S 0.29 2.00 22.38 -107.50 -2.41 -0.40 16 20 C -0.35 -4.23 5.80 -35.39 -0.21 -4.43 16 21 C 0.55 7.62 3.06 36.00 0.11 7.73 16 22 F -0.15 -2.47 16.93 2.25 0.04 -2.44 16 23 F -0.17 -2.07 16.81 2.25 0.04 -2.03 16 24 F -0.16 -2.50 16.90 2.25 0.04 -2.46 16 25 C 0.13 2.52 8.25 -8.50 -0.07 2.45 16 26 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.33 8.00 -51.93 -0.42 0.91 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.87 7.93 -51.93 -0.41 1.46 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.40 5.26 8.46 -40.82 -0.35 4.91 16 33 H 0.22 0.44 8.06 -52.48 -0.42 0.01 16 34 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -35.25 337.11 -6.74 -41.99 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -3.25 Total: -1.33 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -0.88 Total: 13.43 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.45 Total: -59.21 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.11 Total: -6.93 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.41 Total: -0.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.25 -6.74 -41.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031840952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.368 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds