Wall clock time and date at job start Tue Mar 31 2020 18:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00472 * 2 1 4 4 H 1.48505 * 109.47255 * 85.07385 * 3 2 1 5 5 H 1.48491 * 109.47477 * 205.07935 * 3 2 1 6 6 H 1.48497 * 109.46784 * 325.07773 * 3 2 1 7 7 C 1.38815 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00147 * 191.72304 * 7 2 1 9 9 N 1.36935 * 120.00011 * 11.72029 * 7 2 1 10 10 C 1.47076 * 136.05476 * 12.55939 * 9 7 2 11 11 C 1.53753 * 87.88405 * 152.96370 * 10 9 7 12 12 C 1.53006 * 114.57642 * 272.66131 * 11 10 9 13 13 N 1.46499 * 109.47095 * 268.67505 * 12 11 10 14 14 C 1.34776 * 119.99541 * 179.97438 * 13 12 11 15 15 O 1.21629 * 120.00533 * 0.02562 * 14 13 12 16 16 C 1.47269 * 119.99646 * 179.97438 * 14 13 12 17 17 N 1.33556 * 123.14229 * 285.29862 * 16 14 13 18 18 C 1.28647 * 115.76492 * 179.97438 * 17 16 14 19 19 S 1.70769 * 110.56296 * 0.02562 * 18 17 16 20 20 C 1.35207 * 123.13776 * 105.01455 * 16 14 13 21 21 C 1.50697 * 125.59005 * 359.97438 * 20 16 14 22 22 F 1.39896 * 109.47303 * 63.05282 * 21 20 16 23 23 F 1.39900 * 109.47151 * 183.05563 * 21 20 16 24 24 F 1.39902 * 109.46807 * 303.05475 * 21 20 16 25 25 C 1.47066 * 136.06139 * 192.93174 * 9 7 2 26 26 H 0.97007 * 119.99800 * 359.97438 * 1 2 3 27 27 H 1.09000 * 113.46833 * 267.69557 * 10 9 7 28 28 H 1.09002 * 113.46314 * 38.13971 * 10 9 7 29 29 H 1.08998 * 114.08702 * 139.78332 * 11 10 9 30 30 H 1.09003 * 109.46581 * 28.67545 * 12 11 10 31 31 H 1.09003 * 109.46917 * 148.67580 * 12 11 10 32 32 H 0.96996 * 120.00516 * 359.97438 * 13 12 11 33 33 H 1.08004 * 124.72016 * 179.97438 * 18 17 16 34 34 H 1.09002 * 113.46471 * 321.86683 * 25 9 7 35 35 H 1.09003 * 113.46938 * 92.24339 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3937 2.1065 1.3949 5 1 3.5959 1.4123 -0.5934 6 1 1.5037 2.6203 -0.8015 7 6 2.0102 -1.2022 0.0005 8 1 3.0733 -1.2119 0.1906 9 7 1.3469 -2.3758 -0.2398 10 6 0.0193 -2.7577 -0.7445 11 6 0.6471 -4.0723 -1.2360 12 6 1.2569 -4.0012 -2.6375 13 7 0.2484 -4.3837 -3.6289 14 6 0.5619 -4.3939 -4.9396 15 8 1.6822 -4.0861 -5.2994 16 6 -0.4518 -4.7790 -5.9361 17 7 -0.8405 -6.0416 -6.1319 18 6 -1.7359 -6.2168 -7.0389 19 16 -2.1731 -4.7252 -7.7462 20 6 -1.0798 -3.8865 -6.7344 21 6 -0.8518 -2.3969 -6.7339 22 9 0.4690 -2.1271 -7.1079 23 9 -1.7266 -1.7909 -7.6420 24 9 -1.0861 -1.8898 -5.4513 25 6 1.6461 -3.8090 -0.1009 26 1 -0.4850 0.8401 0.0004 27 1 -0.7207 -2.8981 0.0435 28 1 -0.3390 -2.1178 -1.5509 29 1 0.0186 -4.9497 -1.0837 30 1 1.5939 -2.9838 -2.8359 31 1 2.1047 -4.6835 -2.6999 32 1 -0.6450 -4.6296 -3.3420 33 1 -2.1524 -7.1742 -7.3153 34 1 2.6738 -4.0648 -0.3589 35 1 1.3360 -4.2263 0.8572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031840952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:32 Heat of formation + Delta-G solvation = -97.885254 kcal Electronic energy + Delta-G solvation = -26875.715853 eV Core-core repulsion = 22394.247438 eV Total energy + Delta-G solvation = -4481.468416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.44138 -48.98346 -48.91819 -41.85825 -40.41405 -39.55803 -35.88242 -34.26331 -33.18388 -30.65472 -28.94704 -27.40650 -26.38016 -25.57796 -24.58160 -23.49973 -21.52316 -20.92082 -20.31960 -19.79129 -19.47679 -18.68928 -18.45725 -17.77358 -17.49007 -16.98394 -16.44164 -16.02414 -15.92521 -15.73950 -15.71778 -15.58529 -15.44566 -15.34106 -15.07301 -15.04957 -14.81371 -14.52498 -14.13419 -13.73304 -13.47609 -13.27286 -13.07304 -12.77094 -12.66208 -12.32515 -11.86421 -11.69223 -11.52554 -11.23965 -11.10359 -11.05970 -10.82475 -10.30970 -10.22076 -8.91425 -7.96784 -5.27131 -1.01739 -0.23820 0.23027 0.97351 1.27960 1.32146 1.41342 1.43920 1.53054 1.86207 2.36289 2.45359 2.80588 2.98614 3.09832 3.27536 3.49563 3.59716 3.66496 3.79250 3.90366 4.47160 4.52446 4.56621 4.75859 4.88602 4.93307 5.01601 5.18343 5.20298 5.47198 5.55675 5.90893 6.09281 6.23064 6.86015 6.88333 7.57748 8.60761 9.22209 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.003679 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.070828 B = 7608.475953 C = 8674.921696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.295 1.295 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.640 5.640 10 C 0.164 3.836 11 C -0.123 4.123 12 C 0.159 3.841 13 N -0.689 5.689 14 C 0.577 3.423 15 O -0.556 6.556 16 C 0.089 3.911 17 N -0.465 5.465 18 C 0.037 3.963 19 S 0.382 5.618 20 C -0.382 4.382 21 C 0.541 3.459 22 F -0.173 7.173 23 F -0.161 7.161 24 F -0.176 7.176 25 C 0.124 3.876 26 H 0.248 0.752 27 H 0.027 0.973 28 H 0.018 0.982 29 H 0.122 0.878 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.269 0.731 34 H 0.055 0.945 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.255 -16.244 -18.713 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.799 3.201 4 H -0.208 1.208 5 H -0.194 1.194 6 H -0.222 1.222 7 C -0.359 4.359 8 H 0.100 0.900 9 N -0.366 5.366 10 C 0.038 3.962 11 C -0.143 4.143 12 C 0.036 3.964 13 N -0.339 5.339 14 C 0.358 3.642 15 O -0.433 6.433 16 C -0.054 4.054 17 N -0.179 5.179 18 C -0.259 4.259 19 S 0.642 5.358 20 C -0.507 4.507 21 C 0.484 3.516 22 F -0.155 7.155 23 F -0.142 7.142 24 F -0.157 7.157 25 C -0.001 4.001 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.140 0.860 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.253 0.747 33 H 0.284 0.716 34 H 0.073 0.927 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.916 -15.876 -19.419 26.971 hybrid contribution 0.794 1.832 1.297 2.381 sum -9.122 -14.044 -18.122 24.675 Atomic orbital electron populations 1.70030 1.06516 1.25693 1.57551 1.25644 0.96391 1.00977 1.02653 0.85185 0.77970 0.79466 0.77521 1.20798 1.19433 1.22180 1.19299 0.91621 0.83583 1.41395 0.90043 1.46154 1.14526 1.00908 1.75055 1.22027 0.88477 0.91009 0.94664 1.23026 0.99456 0.98944 0.92840 1.20881 0.90260 0.99626 0.85631 1.45786 1.16748 1.66610 1.04800 1.17511 0.86293 0.77613 0.82738 1.90867 1.22265 1.49539 1.80656 1.20038 0.97983 0.89127 0.98301 1.67242 1.14121 1.16977 1.19570 1.29717 0.95495 1.06577 0.94081 1.82661 1.29052 0.95182 1.28902 1.25824 1.14199 0.97874 1.12781 1.17162 0.74510 0.85696 0.74211 1.93279 1.36295 1.94708 1.91195 1.93225 1.68845 1.85183 1.66982 1.93295 1.94179 1.88752 1.39492 1.22571 0.97790 0.84101 0.95661 0.94295 0.95529 0.96392 0.85992 0.94075 0.90235 0.74735 0.71567 0.92707 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 12.25 21.65 0.27 -58.98 16 2 C -0.06 -3.72 5.48 84.86 0.46 -3.26 16 3 Si 0.97 47.68 29.57 68.60 2.03 49.70 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 7 C -0.23 -13.37 10.71 84.03 0.90 -12.47 16 8 H 0.08 4.55 7.86 -2.91 -0.02 4.52 16 9 N -0.64 -33.21 3.57 -737.89 -2.64 -35.85 16 10 C 0.16 7.65 6.70 83.27 0.56 8.21 16 11 C -0.12 -4.20 4.17 -10.37 -0.04 -4.24 16 12 C 0.16 5.65 5.52 86.38 0.48 6.12 16 13 N -0.69 -21.36 5.55 -466.50 -2.59 -23.95 16 14 C 0.58 19.60 6.70 86.62 0.58 20.18 16 15 O -0.56 -23.39 16.82 -4.12 -0.07 -23.46 16 16 C 0.09 2.33 6.46 40.56 0.26 2.60 16 17 N -0.46 -9.22 10.68 -193.02 -2.06 -11.28 16 18 C 0.04 0.33 12.17 130.71 1.59 1.92 16 19 S 0.38 3.90 22.38 -56.49 -1.26 2.63 16 20 C -0.38 -8.82 5.80 24.99 0.15 -8.67 16 21 C 0.54 15.34 3.06 71.24 0.22 15.56 16 22 F -0.17 -5.81 16.93 44.97 0.76 -5.05 16 23 F -0.16 -3.78 16.81 44.97 0.76 -3.03 16 24 F -0.18 -5.94 16.90 44.97 0.76 -5.18 16 25 C 0.12 4.83 8.25 83.18 0.69 5.52 16 26 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 29 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.04 1.85 7.93 -2.39 -0.02 1.84 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.42 10.49 8.46 -92.71 -0.78 9.71 16 33 H 0.27 -0.62 8.06 -2.91 -0.02 -0.64 16 34 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -82.20 337.11 2.17 -80.03 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 0.38 Total: 2.97 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 5.84 Total: 31.45 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -7.02 Total: -130.06 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.07 Total: -23.46 kcal Atomic # 9 Polarization: -15.54 SS G_CDS: 2.28 Total: -13.27 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.70 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.26 Total: 2.63 kcal Total: -82.20 2.17 -80.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031840952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.860 kcal (2) G-P(sol) polarization free energy of solvation -82.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds