Wall clock time and date at job start Tue Mar 31 2020 18:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47119 * 270.00457 * 3 2 1 5 5 H 1.48506 * 109.46927 * 30.00242 * 3 2 1 6 6 H 1.48501 * 109.47166 * 150.00009 * 3 2 1 7 7 C 1.38814 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.47072 * 136.05739 * 359.94868 * 9 7 2 11 11 C 1.53501 * 87.98344 * 207.15450 * 10 9 7 12 12 C 1.47069 * 136.05734 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.47037 * 267.62624 * 12 9 7 14 14 C 1.52999 * 113.46344 * 38.07227 * 12 9 7 15 15 N 1.46499 * 109.46897 * 285.48933 * 14 12 9 16 16 C 1.34780 * 120.00356 * 180.02562 * 15 14 12 17 17 O 1.21687 * 119.99550 * 359.97438 * 16 15 14 18 18 C 1.46681 * 120.00216 * 180.02562 * 16 15 14 19 19 S 1.76213 * 126.13189 * 354.39836 * 18 16 15 20 20 C 1.70949 * 90.31378 * 180.02562 * 19 18 16 21 21 N 1.29430 * 110.39250 * 359.97438 * 20 19 18 22 22 C 1.30937 * 117.36143 * 359.71086 * 21 20 19 23 23 C 1.50705 * 122.90359 * 180.34457 * 22 21 20 24 24 F 1.39897 * 109.47378 * 244.06642 * 23 22 21 25 25 F 1.39898 * 109.46981 * 4.07021 * 23 22 21 26 26 F 1.39906 * 109.46922 * 124.06603 * 23 22 21 27 27 H 0.97003 * 119.99481 * 359.97438 * 1 2 3 28 28 H 1.08997 * 113.46795 * 321.93979 * 10 9 7 29 29 H 1.08999 * 113.46413 * 92.37587 * 10 9 7 30 30 H 1.09005 * 114.20436 * 220.34347 * 11 10 9 31 31 H 1.09000 * 114.20448 * 87.52252 * 11 10 9 32 32 H 1.08999 * 109.47424 * 45.49054 * 14 12 9 33 33 H 1.09004 * 109.47227 * 165.49724 * 14 12 9 34 34 H 0.97003 * 120.00417 * 0.02562 * 15 14 12 35 35 H 1.08001 * 124.80383 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.0878 -2.7948 -0.0015 11 6 0.3420 -4.0924 0.6970 12 6 1.6799 -3.8154 -0.0029 13 1 1.7443 -4.2458 -1.0022 14 6 2.8990 -4.1412 0.8623 15 7 4.1154 -3.6903 0.1816 16 6 5.3189 -3.8740 0.7600 17 8 5.3950 -4.4139 1.8478 18 6 6.5367 -3.4220 0.0787 19 16 6.6290 -2.7506 -1.5479 20 6 8.3215 -2.5711 -1.3879 21 7 8.7109 -2.9847 -0.2250 22 6 7.7930 -3.4401 0.5902 23 6 8.1059 -3.9454 1.9751 24 9 7.8002 -5.3083 2.0544 25 9 9.4655 -3.7559 2.2446 26 9 7.3422 -3.2409 2.9121 27 1 -0.4849 0.8401 0.0004 28 1 -0.7224 -2.1590 0.6158 29 1 -0.4938 -2.9536 -1.0005 30 1 -0.1731 -4.9841 0.3395 31 1 0.3829 -4.0223 1.7840 32 1 2.8099 -3.6324 1.8221 33 1 2.9517 -5.2177 1.0252 34 1 4.0548 -3.2595 -0.6854 35 1 8.9735 -2.1693 -2.1494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038357690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:14 Heat of formation + Delta-G solvation = -70.000830 kcal Electronic energy + Delta-G solvation = -27015.075830 eV Core-core repulsion = 22534.816574 eV Total energy + Delta-G solvation = -4480.259256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.00220 -47.53105 -47.45114 -40.56182 -39.32289 -38.13390 -34.36251 -32.33300 -31.74087 -28.80207 -28.04372 -26.89896 -25.02895 -23.56523 -22.74274 -21.37488 -20.42780 -19.69354 -19.17080 -18.39669 -18.25080 -17.21156 -16.99399 -16.50038 -15.82980 -15.70313 -15.11492 -15.02833 -14.42060 -14.28248 -14.22201 -14.15226 -13.87242 -13.82345 -13.61119 -13.55790 -13.41327 -13.05953 -13.01631 -12.05042 -11.84102 -11.62723 -11.22402 -11.09213 -10.84470 -10.67925 -10.46617 -10.19997 -10.01432 -9.94607 -9.92293 -9.69418 -9.38468 -8.90443 -8.82953 -7.00096 -5.86321 -3.19604 -0.30697 0.61171 1.01980 1.83055 2.52946 2.92438 3.10627 3.30047 3.36298 3.38382 3.45587 3.94055 4.31546 4.34549 4.43762 4.64421 4.75223 5.09211 5.17157 5.29106 5.46376 5.57818 5.79867 5.95866 6.21227 6.28882 6.47852 6.53718 6.66371 6.91221 7.12641 7.29517 7.47555 7.49779 7.87596 8.10465 8.92537 9.60445 10.52536 11.30567 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.004162 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.213080 B = 6725.408437 C = 7545.840899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.159 4.159 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.121 3.879 15 N -0.698 5.698 16 C 0.579 3.421 17 O -0.511 6.511 18 C -0.228 4.228 19 S 0.244 5.756 20 C 0.024 3.976 21 N -0.443 5.443 22 C 0.034 3.966 23 C 0.551 3.449 24 F -0.159 7.159 25 F -0.169 7.169 26 F -0.156 7.156 27 H 0.254 0.746 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.015 -8.335 -4.499 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.198 4.198 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.348 5.348 16 C 0.361 3.639 17 O -0.388 6.388 18 C -0.355 4.355 19 S 0.501 5.499 20 C -0.272 4.272 21 N -0.155 5.155 22 C -0.107 4.107 23 C 0.494 3.506 24 F -0.140 7.140 25 F -0.151 7.151 26 F -0.137 7.137 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.939 -8.063 -4.428 15.876 hybrid contribution 0.809 0.988 0.261 1.303 sum 13.748 -7.075 -4.167 16.014 Atomic orbital electron populations 1.69819 1.04971 1.25413 1.55946 1.24762 0.95623 0.97398 1.02271 0.86232 0.78851 0.83786 0.77618 1.21491 1.21459 1.20592 1.18783 0.89845 0.81367 1.44555 0.90435 1.45677 1.02684 0.98449 1.85935 1.22036 0.88622 0.90186 0.96569 1.23667 0.96571 0.99136 1.00471 1.22456 0.91933 0.87971 0.95898 0.93302 1.21992 0.82164 0.98702 0.97451 1.45859 1.05644 1.60069 1.23226 1.16652 0.81832 0.80197 0.85231 1.90905 1.86050 1.42645 1.19241 1.25961 0.98913 1.10027 1.00584 1.84343 1.06184 1.50920 1.08415 1.28760 0.98127 1.02528 0.97763 1.65783 1.35114 1.12084 1.02554 1.20356 0.88513 1.04885 0.96956 1.16950 0.74284 0.76075 0.83295 1.93249 1.92827 1.31490 1.96473 1.93209 1.32311 1.94958 1.94573 1.93283 1.75525 1.78387 1.66537 0.93561 0.90898 0.95637 0.92206 0.90071 0.90348 0.91510 0.76329 0.76601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 11.51 55.49 0.64 -25.36 16 2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 3 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.22 -5.59 10.55 -15.06 -0.16 -5.75 16 8 H 0.08 1.90 7.50 -52.49 -0.39 1.50 16 9 N -0.60 -13.90 3.65 -176.95 -0.65 -14.54 16 10 C 0.15 3.30 7.39 -8.49 -0.06 3.23 16 11 C -0.16 -2.72 8.03 -26.20 -0.21 -2.93 16 12 C 0.13 2.25 4.11 -72.38 -0.30 1.95 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C 0.12 2.04 5.52 -4.04 -0.02 2.02 16 15 N -0.70 -11.29 5.33 -61.62 -0.33 -11.61 16 16 C 0.58 9.69 7.69 -12.85 -0.10 9.59 16 17 O -0.51 -9.85 13.11 5.20 0.07 -9.78 16 18 C -0.23 -3.26 6.44 -37.10 -0.24 -3.50 16 19 S 0.24 2.41 22.37 -107.50 -2.40 0.00 16 20 C 0.02 0.21 12.22 51.75 0.63 0.84 16 21 N -0.44 -5.65 10.11 -11.53 -0.12 -5.77 16 22 C 0.03 0.50 6.20 -83.89 -0.52 -0.02 16 23 C 0.55 8.70 2.79 36.01 0.10 8.80 16 24 F -0.16 -2.58 15.93 2.25 0.04 -2.55 16 25 F -0.17 -2.52 17.01 2.25 0.04 -2.48 16 26 F -0.16 -2.71 15.56 2.25 0.04 -2.68 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.40 6.09 7.57 -40.82 -0.31 5.78 16 35 H 0.22 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 329.29 15.07 4.96 4.96 Total: -1.00 -31.95 329.29 -6.88 -38.83 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -3.17 Total: 0.72 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -0.97 Total: 14.05 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.45 Total: -57.29 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.11 Total: -7.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.40 Total: 0.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.95 -6.88 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038357690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.175 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds