Wall clock time and date at job start Tue Mar 31 2020 18:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47119 * 270.00457 * 3 2 1 5 5 H 1.48506 * 109.46927 * 30.00242 * 3 2 1 6 6 H 1.48501 * 109.47166 * 150.00009 * 3 2 1 7 7 C 1.38814 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.47072 * 136.05739 * 359.94868 * 9 7 2 11 11 C 1.53501 * 87.98344 * 207.15450 * 10 9 7 12 12 C 1.47069 * 136.05734 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.47037 * 267.62624 * 12 9 7 14 14 C 1.52999 * 113.46344 * 38.07227 * 12 9 7 15 15 N 1.46499 * 109.46897 * 285.48933 * 14 12 9 16 16 C 1.34780 * 120.00356 * 180.02562 * 15 14 12 17 17 O 1.21687 * 119.99550 * 359.97438 * 16 15 14 18 18 C 1.46681 * 120.00216 * 180.02562 * 16 15 14 19 19 S 1.76213 * 126.13189 * 354.39836 * 18 16 15 20 20 C 1.70949 * 90.31378 * 180.02562 * 19 18 16 21 21 N 1.29430 * 110.39250 * 359.97438 * 20 19 18 22 22 C 1.30937 * 117.36143 * 359.71086 * 21 20 19 23 23 C 1.50705 * 122.90359 * 180.34457 * 22 21 20 24 24 F 1.39897 * 109.47378 * 244.06642 * 23 22 21 25 25 F 1.39898 * 109.46981 * 4.07021 * 23 22 21 26 26 F 1.39906 * 109.46922 * 124.06603 * 23 22 21 27 27 H 0.97003 * 119.99481 * 359.97438 * 1 2 3 28 28 H 1.08997 * 113.46795 * 321.93979 * 10 9 7 29 29 H 1.08999 * 113.46413 * 92.37587 * 10 9 7 30 30 H 1.09005 * 114.20436 * 220.34347 * 11 10 9 31 31 H 1.09000 * 114.20448 * 87.52252 * 11 10 9 32 32 H 1.08999 * 109.47424 * 45.49054 * 14 12 9 33 33 H 1.09004 * 109.47227 * 165.49724 * 14 12 9 34 34 H 0.97003 * 120.00417 * 0.02562 * 15 14 12 35 35 H 1.08001 * 124.80383 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.0878 -2.7948 -0.0015 11 6 0.3420 -4.0924 0.6970 12 6 1.6799 -3.8154 -0.0029 13 1 1.7443 -4.2458 -1.0022 14 6 2.8990 -4.1412 0.8623 15 7 4.1154 -3.6903 0.1816 16 6 5.3189 -3.8740 0.7600 17 8 5.3950 -4.4139 1.8478 18 6 6.5367 -3.4220 0.0787 19 16 6.6290 -2.7506 -1.5479 20 6 8.3215 -2.5711 -1.3879 21 7 8.7109 -2.9847 -0.2250 22 6 7.7930 -3.4401 0.5902 23 6 8.1059 -3.9454 1.9751 24 9 7.8002 -5.3083 2.0544 25 9 9.4655 -3.7559 2.2446 26 9 7.3422 -3.2409 2.9121 27 1 -0.4849 0.8401 0.0004 28 1 -0.7224 -2.1590 0.6158 29 1 -0.4938 -2.9536 -1.0005 30 1 -0.1731 -4.9841 0.3395 31 1 0.3829 -4.0223 1.7840 32 1 2.8099 -3.6324 1.8221 33 1 2.9517 -5.2177 1.0252 34 1 4.0548 -3.2595 -0.6854 35 1 8.9735 -2.1693 -2.1494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038357690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:14 Heat of formation + Delta-G solvation = -92.436785 kcal Electronic energy + Delta-G solvation = -27016.048726 eV Core-core repulsion = 22534.816574 eV Total energy + Delta-G solvation = -4481.232152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.22318 -48.73796 -48.70971 -41.60289 -40.58295 -39.64297 -35.73281 -34.24843 -32.76684 -30.15836 -29.78764 -28.13236 -25.99398 -25.38240 -24.11457 -22.67009 -21.55716 -21.09042 -20.49815 -19.62601 -19.50538 -18.56114 -18.25671 -17.78239 -17.17121 -16.98565 -16.60761 -16.17282 -15.81104 -15.57898 -15.49051 -15.38081 -15.28664 -15.10244 -14.86740 -14.85214 -14.78923 -14.61516 -14.05848 -13.64915 -13.35117 -12.96881 -12.84569 -12.69259 -12.58685 -12.35259 -11.88489 -11.66051 -11.55988 -11.18434 -10.99556 -10.94363 -10.81779 -10.53887 -10.17853 -8.88212 -7.86644 -5.18191 -1.24889 -0.28044 0.19659 0.91479 1.43474 1.43627 1.46608 1.53036 1.69558 1.89458 2.36680 2.46998 2.84907 3.22864 3.32728 3.37839 3.49729 3.57207 3.74059 3.94872 4.10817 4.34517 4.44686 4.61886 4.70088 4.86829 5.07952 5.08918 5.23459 5.33950 5.60247 5.75628 5.98220 6.03418 6.23527 6.85526 6.94548 7.65288 8.64696 9.30842 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013335 B = 0.004162 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.213080 B = 6725.408437 C = 7545.840899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.207 4.207 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.134 4.134 12 C 0.133 3.867 13 H 0.075 0.925 14 C 0.129 3.871 15 N -0.697 5.697 16 C 0.578 3.422 17 O -0.546 6.546 18 C -0.268 4.268 19 S 0.304 5.696 20 C 0.049 3.951 21 N -0.471 5.471 22 C 0.032 3.968 23 C 0.544 3.456 24 F -0.166 7.166 25 F -0.167 7.167 26 F -0.171 7.171 27 H 0.245 0.755 28 H 0.034 0.966 29 H 0.025 0.975 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.407 0.593 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.692 -8.935 -6.558 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.206 1.206 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.335 4.335 8 H 0.104 0.896 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.173 4.173 12 C 0.026 3.974 13 H 0.092 0.908 14 C 0.005 3.995 15 N -0.347 5.347 16 C 0.362 3.638 17 O -0.425 6.425 18 C -0.395 4.395 19 S 0.562 5.438 20 C -0.245 4.245 21 N -0.183 5.183 22 C -0.111 4.111 23 C 0.487 3.513 24 F -0.147 7.147 25 F -0.148 7.148 26 F -0.153 7.153 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.243 0.757 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 14.637 -8.690 -6.525 18.230 hybrid contribution 0.349 1.120 0.827 1.435 sum 14.986 -7.570 -5.699 17.730 Atomic orbital electron populations 1.70000 1.06283 1.25179 1.58648 1.25482 0.96340 1.00374 1.03835 0.85332 0.77674 0.80253 0.77713 1.20608 1.22884 1.19863 1.19150 0.90455 0.82428 1.41467 0.89582 1.45987 1.03675 0.99956 1.85925 1.22050 0.87751 0.92065 0.96448 1.23491 0.95616 0.98169 0.99986 1.22610 0.92734 0.84859 0.97168 0.90762 1.21795 0.82254 0.99643 0.95848 1.45793 1.05390 1.60146 1.23342 1.16932 0.82527 0.79458 0.84876 1.90876 1.86700 1.44157 1.20779 1.25763 0.97647 1.12561 1.03514 1.84156 1.06248 1.48887 1.04468 1.29666 0.98544 0.99232 0.97067 1.65836 1.34912 1.13803 1.03785 1.20215 0.89136 1.05289 0.96491 1.17204 0.74171 0.75776 0.84123 1.93223 1.92902 1.32044 1.96577 1.93202 1.32033 1.94913 1.94675 1.93243 1.75980 1.78674 1.67358 0.94601 0.94704 0.95723 0.88086 0.90311 0.93281 0.89292 0.75712 0.71657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.52 11.51 21.65 0.25 -55.27 16 2 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.96 43.90 29.55 68.60 2.03 45.93 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.21 -10.50 10.55 84.03 0.89 -9.61 16 8 H 0.09 4.11 7.50 -2.91 -0.02 4.08 16 9 N -0.63 -28.68 3.65 -713.76 -2.61 -31.29 16 10 C 0.14 6.18 7.39 83.19 0.62 6.80 16 11 C -0.13 -4.29 8.03 30.94 0.25 -4.04 16 12 C 0.13 4.47 4.11 41.80 0.17 4.64 16 13 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 14 C 0.13 4.17 5.52 86.38 0.48 4.64 16 15 N -0.70 -21.50 5.33 -467.08 -2.49 -23.99 16 16 C 0.58 18.93 7.69 86.45 0.66 19.60 16 17 O -0.55 -21.17 13.11 -4.31 -0.06 -21.23 16 18 C -0.27 -7.26 6.44 23.88 0.15 -7.11 16 19 S 0.30 4.93 22.37 -56.49 -1.26 3.67 16 20 C 0.05 0.67 12.22 130.60 1.60 2.26 16 21 N -0.47 -10.81 10.11 -190.40 -1.92 -12.74 16 22 C 0.03 0.89 6.20 42.10 0.26 1.15 16 23 C 0.54 17.23 2.79 71.24 0.20 17.43 16 24 F -0.17 -5.47 15.93 44.97 0.72 -4.75 16 25 F -0.17 -4.95 17.01 44.97 0.76 -4.18 16 26 F -0.17 -6.09 15.56 44.97 0.70 -5.39 16 27 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.03 1.76 7.12 -2.39 -0.02 1.75 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.41 11.47 7.57 -92.71 -0.70 10.77 16 35 H 0.27 0.64 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -72.22 329.29 2.33 -69.90 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.47 Total: 6.77 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 5.74 Total: 32.57 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -6.77 Total: -123.28 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.06 Total: -21.23 kcal Atomic # 9 Polarization: -16.50 SS G_CDS: 2.18 Total: -14.32 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.26 Total: 3.67 kcal Total: -72.22 2.33 -69.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038357690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.540 kcal (2) G-P(sol) polarization free energy of solvation -72.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds