Wall clock time and date at job start Tue Mar 31 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48504 * 109.46672 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47109 * 300.00230 * 3 2 1 6 6 H 1.48494 * 109.47068 * 60.00575 * 3 2 1 7 7 C 1.38819 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99860 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.47589 * 134.49219 * 0.02562 * 9 7 2 11 11 C 1.53949 * 86.11399 * 155.35813 * 10 9 7 12 12 C 1.47582 * 134.49481 * 180.02562 * 9 7 2 13 13 H 1.08998 * 113.87265 * 90.31817 * 12 9 7 14 14 C 1.53001 * 113.76432 * 318.94296 * 12 9 7 15 15 N 1.46501 * 109.47221 * 78.50491 * 14 12 9 16 16 C 1.34778 * 119.99735 * 179.97438 * 15 14 12 17 17 O 1.21690 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.46690 * 119.99907 * 179.97438 * 16 15 14 19 19 S 1.76216 * 126.12762 * 354.40216 * 18 16 15 20 20 C 1.70955 * 90.30972 * 179.97438 * 19 18 16 21 21 N 1.29428 * 110.39381 * 0.02562 * 20 19 18 22 22 C 1.30946 * 117.35994 * 359.70643 * 21 20 19 23 23 C 1.50699 * 122.89887 * 180.35003 * 22 21 20 24 24 F 1.39904 * 109.46971 * 244.06495 * 23 22 21 25 25 F 1.39900 * 109.47589 * 4.06652 * 23 22 21 26 26 F 1.39900 * 109.47177 * 124.07036 * 23 22 21 27 27 H 0.96999 * 120.00161 * 359.97438 * 1 2 3 28 28 H 1.08993 * 113.77033 * 41.05974 * 10 9 7 29 29 H 1.09000 * 113.86680 * 269.66983 * 10 9 7 30 30 H 1.08993 * 113.74189 * 269.25933 * 11 10 9 31 31 H 1.09004 * 113.83797 * 137.96225 * 11 10 9 32 32 H 1.08999 * 109.47589 * 318.50322 * 14 12 9 33 33 H 1.09002 * 109.46789 * 198.50230 * 14 12 9 34 34 H 0.96994 * 120.00351 * 0.27421 * 15 14 12 35 35 H 1.08005 * 124.80013 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1034 -2.7574 -0.0005 11 6 0.3469 -4.0829 -0.6409 12 6 1.7200 -3.8102 -0.0005 13 1 1.8326 -4.2368 0.9962 14 6 2.9023 -4.1221 -0.9203 15 7 4.1496 -3.7190 -0.2661 16 6 5.3286 -3.8999 -0.8934 17 8 5.3572 -4.3987 -2.0031 18 6 6.5775 -3.4958 -0.2387 19 16 6.7164 -2.6384 1.2946 20 6 8.4207 -2.6585 1.1620 21 7 8.7812 -3.2537 0.0707 22 6 7.8325 -3.7199 -0.7022 23 6 8.1109 -4.4401 -1.9963 24 9 7.5969 -3.6962 -3.0639 25 9 9.4921 -4.5934 -2.1571 26 9 7.5019 -5.6993 -1.9696 27 1 -0.4850 0.8400 0.0004 28 1 -0.7169 -2.1391 -0.6557 29 1 -0.5290 -2.8733 0.9962 30 1 0.3589 -4.0621 -1.7306 31 1 -0.1585 -4.9608 -0.2383 32 1 2.7892 -3.5744 -1.8559 33 1 2.9296 -5.1921 -1.1266 34 1 4.1272 -3.3258 0.6203 35 1 9.1004 -2.2339 1.8860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038357704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:18 Heat of formation + Delta-G solvation = -73.626959 kcal Electronic energy + Delta-G solvation = -26946.696407 eV Core-core repulsion = 22466.279910 eV Total energy + Delta-G solvation = -4480.416497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -50.02031 -47.54978 -47.46866 -40.56841 -39.29429 -37.96811 -34.37533 -32.29681 -31.74707 -28.81929 -27.97929 -26.93745 -25.03961 -23.45468 -22.85567 -21.42946 -20.44251 -19.69077 -19.08209 -18.41417 -18.25898 -17.22241 -16.99869 -16.48951 -15.85204 -15.68386 -15.12972 -15.04341 -14.44429 -14.30212 -14.23927 -14.13024 -13.89064 -13.81897 -13.63093 -13.57759 -13.43155 -13.06890 -13.03867 -12.03072 -11.84042 -11.52783 -11.22976 -11.11158 -10.82188 -10.63360 -10.46922 -10.21677 -10.01782 -9.94619 -9.82116 -9.70284 -9.53654 -8.89250 -8.85209 -6.98581 -5.85125 -3.18173 -0.31463 0.60659 1.01818 1.81994 2.51473 2.94689 3.05944 3.30939 3.35510 3.39389 3.44130 3.92590 4.30838 4.34555 4.42091 4.63098 4.73868 5.03061 5.16441 5.29347 5.52281 5.57197 5.80468 5.94742 6.20511 6.30336 6.47368 6.54961 6.67308 6.90329 7.16085 7.31889 7.46791 7.51614 7.89444 8.09247 8.94900 9.62210 10.49964 11.31396 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.004057 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.910738 B = 6899.652838 C = 7851.729532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.124 3.876 13 H 0.051 0.949 14 C 0.122 3.878 15 N -0.699 5.699 16 C 0.579 3.421 17 O -0.510 6.510 18 C -0.229 4.229 19 S 0.247 5.753 20 C 0.023 3.977 21 N -0.444 5.444 22 C 0.034 3.966 23 C 0.552 3.448 24 F -0.157 7.157 25 F -0.169 7.169 26 F -0.159 7.159 27 H 0.253 0.747 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.306 -8.481 4.110 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.193 4.193 12 C 0.016 3.984 13 H 0.068 0.932 14 C -0.001 4.001 15 N -0.349 5.349 16 C 0.361 3.639 17 O -0.388 6.388 18 C -0.356 4.356 19 S 0.504 5.496 20 C -0.273 4.273 21 N -0.156 5.156 22 C -0.108 4.108 23 C 0.494 3.506 24 F -0.138 7.138 25 F -0.151 7.151 26 F -0.140 7.140 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 13.208 -8.096 3.982 15.995 hybrid contribution 0.827 0.853 -0.207 1.206 sum 14.035 -7.243 3.775 16.238 Atomic orbital electron populations 1.69820 1.04957 1.25249 1.56287 1.24752 0.95604 0.97388 1.02363 0.86167 0.78749 0.84141 0.77423 1.20518 1.21616 1.21667 1.18924 0.90020 0.81917 1.44132 0.90537 1.46082 1.02363 0.98451 1.85983 1.22200 0.87848 0.89598 0.96971 1.23770 0.95811 0.99064 1.00675 1.22531 0.92300 0.87881 0.95666 0.93174 1.21946 0.81289 0.99281 0.97627 1.45851 1.05850 1.62268 1.20888 1.16649 0.81833 0.79896 0.85509 1.90908 1.86272 1.43539 1.18047 1.25964 0.98784 1.08880 1.01945 1.84420 1.04693 1.46536 1.13930 1.28769 0.98586 1.01495 0.98406 1.65790 1.34877 1.11072 1.03821 1.20352 0.88129 1.04146 0.98128 1.16946 0.74127 0.77226 0.82280 1.93274 1.86793 1.76369 1.57375 1.93210 1.30205 1.95650 1.95990 1.93253 1.83091 1.41146 1.96515 0.93637 0.90753 0.95474 0.90385 0.92671 0.90225 0.91403 0.76416 0.76607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.99 11.38 55.49 0.63 -25.36 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.22 -5.69 10.51 -15.06 -0.16 -5.85 16 8 H 0.08 1.87 7.80 -52.49 -0.41 1.46 16 9 N -0.60 -13.90 3.57 -170.73 -0.61 -14.51 16 10 C 0.16 3.47 7.51 -2.97 -0.02 3.45 16 11 C -0.15 -2.64 7.86 -25.80 -0.20 -2.85 16 12 C 0.12 2.22 4.33 -66.86 -0.29 1.93 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.06 5.54 -4.04 -0.02 2.04 16 15 N -0.70 -11.16 5.52 -61.61 -0.34 -11.51 16 16 C 0.58 9.61 7.69 -12.85 -0.10 9.51 16 17 O -0.51 -9.80 13.11 5.20 0.07 -9.73 16 18 C -0.23 -3.24 6.44 -37.10 -0.24 -3.48 16 19 S 0.25 2.45 22.37 -107.50 -2.40 0.05 16 20 C 0.02 0.20 12.22 51.75 0.63 0.83 16 21 N -0.44 -5.59 10.11 -11.53 -0.12 -5.70 16 22 C 0.03 0.49 6.20 -83.90 -0.52 -0.03 16 23 C 0.55 8.55 2.79 36.01 0.10 8.65 16 24 F -0.16 -2.66 15.94 2.25 0.04 -2.62 16 25 F -0.17 -2.47 17.01 2.25 0.04 -2.43 16 26 F -0.16 -2.55 15.56 2.25 0.04 -2.52 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.07 1.83 7.15 -51.93 -0.37 1.45 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 5.95 7.67 -40.82 -0.31 5.63 16 35 H 0.22 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -31.87 329.85 -6.82 -38.69 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.19 Total: 0.46 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -0.92 Total: 14.00 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.44 Total: -57.07 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 0.11 Total: -7.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.40 Total: 0.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.87 -6.82 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038357704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.938 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds