Wall clock time and date at job start Tue Mar 31 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48504 * 109.46672 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47109 * 300.00230 * 3 2 1 6 6 H 1.48494 * 109.47068 * 60.00575 * 3 2 1 7 7 C 1.38819 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99860 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.47589 * 134.49219 * 0.02562 * 9 7 2 11 11 C 1.53949 * 86.11399 * 155.35813 * 10 9 7 12 12 C 1.47582 * 134.49481 * 180.02562 * 9 7 2 13 13 H 1.08998 * 113.87265 * 90.31817 * 12 9 7 14 14 C 1.53001 * 113.76432 * 318.94296 * 12 9 7 15 15 N 1.46501 * 109.47221 * 78.50491 * 14 12 9 16 16 C 1.34778 * 119.99735 * 179.97438 * 15 14 12 17 17 O 1.21690 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.46690 * 119.99907 * 179.97438 * 16 15 14 19 19 S 1.76216 * 126.12762 * 354.40216 * 18 16 15 20 20 C 1.70955 * 90.30972 * 179.97438 * 19 18 16 21 21 N 1.29428 * 110.39381 * 0.02562 * 20 19 18 22 22 C 1.30946 * 117.35994 * 359.70643 * 21 20 19 23 23 C 1.50699 * 122.89887 * 180.35003 * 22 21 20 24 24 F 1.39904 * 109.46971 * 244.06495 * 23 22 21 25 25 F 1.39900 * 109.47589 * 4.06652 * 23 22 21 26 26 F 1.39900 * 109.47177 * 124.07036 * 23 22 21 27 27 H 0.96999 * 120.00161 * 359.97438 * 1 2 3 28 28 H 1.08993 * 113.77033 * 41.05974 * 10 9 7 29 29 H 1.09000 * 113.86680 * 269.66983 * 10 9 7 30 30 H 1.08993 * 113.74189 * 269.25933 * 11 10 9 31 31 H 1.09004 * 113.83797 * 137.96225 * 11 10 9 32 32 H 1.08999 * 109.47589 * 318.50322 * 14 12 9 33 33 H 1.09002 * 109.46789 * 198.50230 * 14 12 9 34 34 H 0.96994 * 120.00351 * 0.27421 * 15 14 12 35 35 H 1.08005 * 124.80013 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1034 -2.7574 -0.0005 11 6 0.3469 -4.0829 -0.6409 12 6 1.7200 -3.8102 -0.0005 13 1 1.8326 -4.2368 0.9962 14 6 2.9023 -4.1221 -0.9203 15 7 4.1496 -3.7190 -0.2661 16 6 5.3286 -3.8999 -0.8934 17 8 5.3572 -4.3987 -2.0031 18 6 6.5775 -3.4958 -0.2387 19 16 6.7164 -2.6384 1.2946 20 6 8.4207 -2.6585 1.1620 21 7 8.7812 -3.2537 0.0707 22 6 7.8325 -3.7199 -0.7022 23 6 8.1109 -4.4401 -1.9963 24 9 7.5969 -3.6962 -3.0639 25 9 9.4921 -4.5934 -2.1571 26 9 7.5019 -5.6993 -1.9696 27 1 -0.4850 0.8400 0.0004 28 1 -0.7169 -2.1391 -0.6557 29 1 -0.5290 -2.8733 0.9962 30 1 0.3589 -4.0621 -1.7306 31 1 -0.1585 -4.9608 -0.2383 32 1 2.7892 -3.5744 -1.8559 33 1 2.9296 -5.1921 -1.1266 34 1 4.1272 -3.3258 0.6203 35 1 9.1004 -2.2339 1.8860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038357704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:17 Heat of formation + Delta-G solvation = -95.935148 kcal Electronic energy + Delta-G solvation = -26947.663762 eV Core-core repulsion = 22466.279910 eV Total energy + Delta-G solvation = -4481.383853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.21727 -48.72917 -48.70584 -41.59819 -40.52678 -39.50126 -35.74272 -34.20279 -32.76735 -30.14950 -29.74887 -28.16224 -25.99200 -25.27588 -24.23621 -22.70257 -21.55404 -21.02192 -20.45478 -19.62058 -19.50069 -18.55116 -18.25889 -17.77380 -17.17136 -16.97606 -16.60605 -16.19209 -15.80062 -15.56567 -15.48427 -15.39163 -15.27704 -15.09861 -14.89013 -14.85974 -14.76648 -14.63221 -14.05444 -13.61617 -13.29711 -12.96489 -12.84140 -12.71343 -12.56280 -12.26647 -11.87441 -11.64176 -11.47666 -11.27179 -11.03457 -10.97404 -10.82283 -10.54439 -10.19097 -8.86792 -7.85097 -5.16680 -1.24864 -0.28213 0.19903 0.91354 1.43696 1.43966 1.46729 1.54199 1.73036 1.85329 2.37020 2.48051 2.85250 3.23261 3.29455 3.38819 3.46929 3.57453 3.73975 4.00463 4.09667 4.35410 4.44737 4.61188 4.72371 4.86579 5.08509 5.08993 5.23325 5.35831 5.63455 5.76501 5.99904 6.03227 6.23329 6.85604 6.97177 7.67485 8.61818 9.31828 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.004057 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.910738 B = 6899.652838 C = 7851.729532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.303 1.303 6 H -0.292 1.292 7 C -0.211 4.211 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.130 4.130 12 C 0.132 3.868 13 H 0.076 0.924 14 C 0.131 3.869 15 N -0.697 5.697 16 C 0.578 3.422 17 O -0.545 6.545 18 C -0.267 4.267 19 S 0.300 5.700 20 C 0.050 3.950 21 N -0.471 5.471 22 C 0.032 3.968 23 C 0.545 3.455 24 F -0.171 7.171 25 F -0.167 7.167 26 F -0.166 7.166 27 H 0.244 0.756 28 H 0.037 0.963 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.407 0.593 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.168 -9.011 6.034 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.231 1.231 6 H -0.219 1.219 7 C -0.339 4.339 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.169 4.169 12 C 0.026 3.974 13 H 0.094 0.906 14 C 0.007 3.993 15 N -0.347 5.347 16 C 0.362 3.638 17 O -0.425 6.425 18 C -0.394 4.394 19 S 0.559 5.441 20 C -0.244 4.244 21 N -0.183 5.183 22 C -0.110 4.110 23 C 0.488 3.512 24 F -0.152 7.152 25 F -0.148 7.148 26 F -0.148 7.148 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.243 0.757 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 15.096 -8.652 5.943 18.387 hybrid contribution 0.315 0.967 -0.736 1.256 sum 15.412 -7.684 5.207 17.991 Atomic orbital electron populations 1.69999 1.06286 1.25041 1.58941 1.25471 0.96330 1.00367 1.03942 0.85284 0.78730 0.80687 0.76421 1.18478 1.23105 1.21918 1.19302 0.90643 0.82961 1.41029 0.89630 1.46423 1.03277 0.99914 1.85944 1.22164 0.87108 0.91762 0.96527 1.23567 0.94943 0.97896 1.00484 1.22704 0.93057 0.84739 0.96928 0.90631 1.21738 0.81464 1.00081 0.96050 1.45777 1.05524 1.62330 1.21052 1.16927 0.82591 0.79111 0.85128 1.90881 1.86951 1.45067 1.19592 1.25748 0.97431 1.11520 1.04717 1.84256 1.04971 1.44440 1.10438 1.29664 0.99029 0.98373 0.97358 1.65845 1.34556 1.12795 1.05102 1.20219 0.88750 1.04298 0.97780 1.17189 0.74087 0.77100 0.82851 1.93237 1.87037 1.76658 1.58281 1.93204 1.29901 1.95639 1.96048 1.93227 1.83270 1.41681 1.96578 0.94660 0.94436 0.95807 0.90413 0.88684 0.93177 0.89277 0.75692 0.71683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.52 11.38 21.65 0.25 -55.28 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.96 43.76 29.55 68.60 2.03 45.78 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.21 -10.67 10.51 84.04 0.88 -9.79 16 8 H 0.09 4.06 7.80 -2.91 -0.02 4.04 16 9 N -0.63 -28.60 3.57 -694.08 -2.48 -31.08 16 10 C 0.15 6.53 7.51 86.48 0.65 7.18 16 11 C -0.13 -4.19 7.86 31.25 0.25 -3.95 16 12 C 0.13 4.42 4.33 45.09 0.20 4.62 16 13 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.13 4.21 5.54 86.38 0.48 4.69 16 15 N -0.70 -21.17 5.52 -467.06 -2.58 -23.75 16 16 C 0.58 18.73 7.69 86.45 0.66 19.40 16 17 O -0.55 -21.03 13.11 -4.32 -0.06 -21.08 16 18 C -0.27 -7.14 6.44 23.88 0.15 -6.99 16 19 S 0.30 4.91 22.37 -56.49 -1.26 3.65 16 20 C 0.05 0.67 12.22 130.60 1.60 2.26 16 21 N -0.47 -10.60 10.11 -190.40 -1.92 -12.53 16 22 C 0.03 0.89 6.20 42.09 0.26 1.16 16 23 C 0.54 16.85 2.79 71.24 0.20 17.05 16 24 F -0.17 -5.89 15.94 44.97 0.72 -5.17 16 25 F -0.17 -4.81 17.01 44.97 0.76 -4.05 16 26 F -0.17 -5.39 15.56 44.97 0.70 -4.69 16 27 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.04 1.90 7.15 -2.39 -0.02 1.88 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 2.53 8.10 -2.39 -0.02 2.51 16 31 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.41 11.15 7.67 -92.71 -0.71 10.44 16 35 H 0.27 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -71.89 329.85 2.40 -69.49 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.46 Total: 6.30 kcal Atomic # 6 Polarization: 26.60 SS G_CDS: 5.79 Total: 32.40 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.74 Total: -122.63 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.06 Total: -21.08 kcal Atomic # 9 Polarization: -16.09 SS G_CDS: 2.18 Total: -13.91 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -1.26 Total: 3.65 kcal Total: -71.89 2.40 -69.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038357704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.448 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds