Wall clock time and date at job start Tue Mar 31 2020 18:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47039 * 90.00307 * 3 2 1 5 5 H 1.48503 * 109.47228 * 209.99868 * 3 2 1 6 6 H 1.48501 * 109.47391 * 330.00310 * 3 2 1 7 7 C 1.38815 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00111 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05820 * 359.62736 * 9 7 2 11 11 C 1.53238 * 88.08275 * 207.20380 * 10 9 7 12 12 C 1.47065 * 136.05587 * 179.97438 * 9 7 2 13 13 H 1.09003 * 113.46478 * 267.62156 * 12 9 7 14 14 C 1.52999 * 113.46911 * 38.06011 * 12 9 7 15 15 N 1.46499 * 109.47096 * 285.49530 * 14 12 9 16 16 C 1.34774 * 119.99588 * 179.97438 * 15 14 12 17 17 O 1.21633 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.47266 * 119.99891 * 179.97438 * 16 15 14 19 19 N 1.33564 * 123.14420 * 284.82676 * 18 16 15 20 20 C 1.28641 * 115.76490 * 179.97438 * 19 18 16 21 21 S 1.70772 * 110.56316 * 359.97438 * 20 19 18 22 22 C 1.35215 * 123.14079 * 104.52930 * 18 16 15 23 23 C 1.50695 * 125.58334 * 0.02562 * 22 18 16 24 24 F 1.39900 * 109.47568 * 64.74049 * 23 22 18 25 25 F 1.39904 * 109.47184 * 184.74074 * 23 22 18 26 26 F 1.39905 * 109.47278 * 304.73805 * 23 22 18 27 27 H 0.97002 * 119.99618 * 359.97438 * 1 2 3 28 28 H 1.09004 * 113.46733 * 321.93238 * 10 9 7 29 29 H 1.09000 * 113.47363 * 92.37191 * 10 9 7 30 30 H 1.09002 * 114.32493 * 220.47232 * 11 10 9 31 31 H 1.09002 * 114.19862 * 87.72704 * 11 10 9 32 32 H 1.09000 * 109.46532 * 45.49831 * 14 12 9 33 33 H 1.09000 * 109.47105 * 165.49421 * 14 12 9 34 34 H 0.96998 * 120.00021 * 359.97438 * 15 14 12 35 35 H 1.08000 * 124.72114 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0067 11 6 0.3419 -4.0917 0.7007 12 6 1.6798 -3.8154 0.0005 13 1 1.7441 -4.2467 -0.9985 14 6 2.8991 -4.1406 0.8657 15 7 4.1154 -3.6903 0.1845 16 6 5.3187 -3.8727 0.7634 17 8 5.3949 -4.4115 1.8512 18 6 6.5414 -3.4206 0.0784 19 7 7.0759 -4.0646 -0.9625 20 6 8.1455 -3.5443 -1.4527 21 16 8.5750 -2.1332 -0.5921 22 6 7.2247 -2.3114 0.4408 23 6 6.8571 -1.3854 1.5714 24 9 6.9565 -2.0710 2.7869 25 9 7.7290 -0.2914 1.5804 26 9 5.5444 -0.9341 1.3966 27 1 -0.4850 0.8401 0.0004 28 1 -0.7194 -2.1603 0.6285 29 1 -0.4988 -2.9516 -0.9906 30 1 -0.1732 -4.9837 0.3440 31 1 0.3837 -4.0241 1.7878 32 1 2.8100 -3.6309 1.8251 33 1 2.9517 -5.2169 1.0296 34 1 4.0546 -3.2609 -0.6832 35 1 8.6954 -3.9443 -2.2917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038511621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:37 Heat of formation + Delta-G solvation = -71.484459 kcal Electronic energy + Delta-G solvation = -27565.813966 eV Core-core repulsion = 23085.490375 eV Total energy + Delta-G solvation = -4480.323591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -50.19830 -47.77532 -47.59285 -40.74504 -38.93484 -37.97178 -34.20539 -32.27099 -32.14721 -28.65134 -27.94992 -26.83810 -24.56356 -23.48267 -23.16112 -21.61020 -20.24066 -19.66321 -19.18346 -18.52381 -18.43407 -17.45251 -16.89352 -16.35353 -16.04898 -15.41299 -15.10796 -14.78559 -14.52384 -14.40427 -14.32960 -14.24964 -14.07100 -13.77358 -13.75970 -13.73128 -13.28514 -12.99580 -12.59725 -12.38356 -11.92943 -11.54879 -11.13770 -11.00544 -10.78811 -10.60033 -10.36625 -10.32670 -10.19035 -9.87074 -9.84729 -9.47091 -9.28291 -8.81891 -8.72009 -6.91326 -5.77726 -3.10254 -0.12714 0.57401 1.02293 1.93957 2.44517 2.54184 3.15798 3.38068 3.43515 3.44378 3.50469 3.99565 4.07229 4.24885 4.42760 4.65138 4.76235 5.16809 5.27536 5.38295 5.54348 5.67531 5.88446 6.03944 6.27658 6.37058 6.56592 6.62673 6.75344 6.92003 7.21513 7.37383 7.57059 7.63740 7.96700 8.23218 9.02436 9.69648 10.61143 11.39471 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.005183 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.248859 B = 5400.510907 C = 6580.694596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.160 4.160 12 C 0.127 3.873 13 H 0.050 0.950 14 C 0.120 3.880 15 N -0.687 5.687 16 C 0.580 3.420 17 O -0.519 6.519 18 C 0.104 3.896 19 N -0.436 5.436 20 C 0.019 3.981 21 S 0.289 5.711 22 C -0.350 4.350 23 C 0.545 3.455 24 F -0.157 7.157 25 F -0.173 7.173 26 F -0.150 7.150 27 H 0.253 0.747 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.407 0.593 35 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.571 -6.235 -3.105 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.340 4.340 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.019 3.981 13 H 0.068 0.932 14 C -0.004 4.004 15 N -0.336 5.336 16 C 0.360 3.640 17 O -0.395 6.395 18 C -0.037 4.037 19 N -0.150 5.150 20 C -0.278 4.278 21 S 0.547 5.453 22 C -0.474 4.474 23 C 0.488 3.512 24 F -0.138 7.138 25 F -0.154 7.154 26 F -0.131 7.131 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.242 0.758 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 17.242 -6.006 -2.671 18.453 hybrid contribution -0.331 0.968 -0.092 1.027 sum 16.912 -5.038 -2.763 17.861 Atomic orbital electron populations 1.69829 1.04931 1.25258 1.56451 1.24739 0.95593 0.97333 1.02487 0.86249 0.78681 0.83851 0.77871 1.21377 1.20617 1.21624 1.18843 0.90001 0.81288 1.43893 0.90187 1.45669 1.02626 0.98502 1.85896 1.21968 0.88659 0.90155 0.96576 1.23623 0.96676 0.99130 1.00439 1.22446 0.91825 0.87941 0.95912 0.93247 1.21991 0.82399 0.98598 0.97420 1.45853 1.05297 1.59297 1.23149 1.17014 0.82137 0.79837 0.85003 1.90865 1.86288 1.42536 1.19817 1.20515 0.98396 0.91181 0.93653 1.67211 1.09630 1.29826 1.08345 1.28833 0.97144 0.97344 1.04486 1.82871 1.19425 1.23846 1.19190 1.25750 1.07950 1.05007 1.08711 1.16916 0.75743 0.77939 0.80570 1.93300 1.95786 1.79219 1.45545 1.93211 1.69527 1.56038 1.96648 1.93388 1.35260 1.89310 1.95157 0.93689 0.90972 0.95674 0.92244 0.90146 0.90513 0.91640 0.75753 0.76604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 11.51 55.49 0.64 -26.34 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.21 -5.73 10.55 -15.06 -0.16 -5.89 16 8 H 0.08 2.09 7.50 -52.49 -0.39 1.70 16 9 N -0.60 -14.59 3.65 -177.15 -0.65 -15.24 16 10 C 0.15 3.45 7.37 -8.64 -0.06 3.39 16 11 C -0.16 -2.87 8.02 -26.34 -0.21 -3.08 16 12 C 0.13 2.43 4.11 -72.39 -0.30 2.13 16 13 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 14 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 15 N -0.69 -12.38 5.33 -61.43 -0.33 -12.71 16 16 C 0.58 10.69 6.69 -12.59 -0.08 10.60 16 17 O -0.52 -10.90 16.99 5.25 0.09 -10.81 16 18 C 0.10 1.63 6.46 -84.52 -0.55 1.08 16 19 N -0.44 -5.75 10.68 -12.36 -0.13 -5.88 16 20 C 0.02 0.16 12.17 51.43 0.63 0.79 16 21 S 0.29 2.56 22.38 -107.50 -2.41 0.15 16 22 C -0.35 -4.98 5.81 -35.39 -0.21 -5.18 16 23 C 0.55 8.71 3.07 36.00 0.11 8.82 16 24 F -0.16 -2.68 17.18 2.25 0.04 -2.64 16 25 F -0.17 -2.42 16.81 2.25 0.04 -2.38 16 26 F -0.15 -2.85 16.81 2.25 0.04 -2.82 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.07 1.84 7.14 -51.93 -0.37 1.47 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.41 7.18 8.36 -40.82 -0.34 6.84 16 35 H 0.22 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -33.51 335.70 -6.78 -40.29 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.20 Total: 1.43 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: -0.95 Total: 14.60 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.47 Total: -60.16 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.11 Total: -7.84 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.41 Total: 0.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.51 -6.78 -40.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038511621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.194 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds