Wall clock time and date at job start Tue Mar 31 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47039 * 90.00307 * 3 2 1 5 5 H 1.48503 * 109.47228 * 209.99868 * 3 2 1 6 6 H 1.48501 * 109.47391 * 330.00310 * 3 2 1 7 7 C 1.38815 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00111 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05820 * 359.62736 * 9 7 2 11 11 C 1.53238 * 88.08275 * 207.20380 * 10 9 7 12 12 C 1.47065 * 136.05587 * 179.97438 * 9 7 2 13 13 H 1.09003 * 113.46478 * 267.62156 * 12 9 7 14 14 C 1.52999 * 113.46911 * 38.06011 * 12 9 7 15 15 N 1.46499 * 109.47096 * 285.49530 * 14 12 9 16 16 C 1.34774 * 119.99588 * 179.97438 * 15 14 12 17 17 O 1.21633 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.47266 * 119.99891 * 179.97438 * 16 15 14 19 19 N 1.33564 * 123.14420 * 284.82676 * 18 16 15 20 20 C 1.28641 * 115.76490 * 179.97438 * 19 18 16 21 21 S 1.70772 * 110.56316 * 359.97438 * 20 19 18 22 22 C 1.35215 * 123.14079 * 104.52930 * 18 16 15 23 23 C 1.50695 * 125.58334 * 0.02562 * 22 18 16 24 24 F 1.39900 * 109.47568 * 64.74049 * 23 22 18 25 25 F 1.39904 * 109.47184 * 184.74074 * 23 22 18 26 26 F 1.39905 * 109.47278 * 304.73805 * 23 22 18 27 27 H 0.97002 * 119.99618 * 359.97438 * 1 2 3 28 28 H 1.09004 * 113.46733 * 321.93238 * 10 9 7 29 29 H 1.09000 * 113.47363 * 92.37191 * 10 9 7 30 30 H 1.09002 * 114.32493 * 220.47232 * 11 10 9 31 31 H 1.09002 * 114.19862 * 87.72704 * 11 10 9 32 32 H 1.09000 * 109.46532 * 45.49831 * 14 12 9 33 33 H 1.09000 * 109.47105 * 165.49421 * 14 12 9 34 34 H 0.96998 * 120.00021 * 359.97438 * 15 14 12 35 35 H 1.08000 * 124.72114 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0067 11 6 0.3419 -4.0917 0.7007 12 6 1.6798 -3.8154 0.0005 13 1 1.7441 -4.2467 -0.9985 14 6 2.8991 -4.1406 0.8657 15 7 4.1154 -3.6903 0.1845 16 6 5.3187 -3.8727 0.7634 17 8 5.3949 -4.4115 1.8512 18 6 6.5414 -3.4206 0.0784 19 7 7.0759 -4.0646 -0.9625 20 6 8.1455 -3.5443 -1.4527 21 16 8.5750 -2.1332 -0.5921 22 6 7.2247 -2.3114 0.4408 23 6 6.8571 -1.3854 1.5714 24 9 6.9565 -2.0710 2.7869 25 9 7.7290 -0.2914 1.5804 26 9 5.5444 -0.9341 1.3966 27 1 -0.4850 0.8401 0.0004 28 1 -0.7194 -2.1603 0.6285 29 1 -0.4988 -2.9516 -0.9906 30 1 -0.1732 -4.9837 0.3440 31 1 0.3837 -4.0241 1.7878 32 1 2.8100 -3.6309 1.8251 33 1 2.9517 -5.2169 1.0296 34 1 4.0546 -3.2609 -0.6832 35 1 8.6954 -3.9443 -2.2917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038511621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:36 Heat of formation + Delta-G solvation = -96.016947 kcal Electronic energy + Delta-G solvation = -27566.877775 eV Core-core repulsion = 23085.490375 eV Total energy + Delta-G solvation = -4481.387400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.45670 -49.00053 -48.92544 -41.84846 -40.34373 -39.50999 -35.71009 -34.25886 -33.20507 -30.15542 -29.76721 -28.04600 -25.61182 -25.40069 -24.44626 -23.06476 -21.49914 -21.04540 -20.60657 -19.80679 -19.75634 -18.57115 -18.47117 -17.71337 -17.42692 -17.10691 -16.32470 -15.98230 -15.91413 -15.76754 -15.64909 -15.50699 -15.42682 -15.35312 -15.07869 -15.06512 -14.81930 -14.66802 -13.75121 -13.67574 -13.39999 -13.26449 -12.98635 -12.75714 -12.63238 -12.32519 -11.91716 -11.67952 -11.54628 -11.26074 -11.13561 -11.00424 -10.84977 -10.28945 -10.20371 -8.89656 -7.88721 -5.19499 -1.03574 -0.25967 0.20240 0.96724 1.27422 1.30176 1.39138 1.42361 1.48456 1.90907 2.33860 2.44804 2.78870 2.97825 3.08524 3.33796 3.43908 3.64953 3.76370 3.92993 4.08395 4.31687 4.49802 4.58344 4.67626 4.85398 5.05631 5.06742 5.22178 5.33012 5.59084 5.73716 5.96906 6.06886 6.22272 6.83456 6.94394 7.63505 8.62601 9.28898 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.005183 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.248859 B = 5400.510907 C = 6580.694596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.294 1.294 5 H -0.266 1.266 6 H -0.292 1.292 7 C -0.202 4.202 8 H 0.083 0.917 9 N -0.629 5.629 10 C 0.144 3.856 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.127 3.873 15 N -0.687 5.687 16 C 0.578 3.422 17 O -0.555 6.555 18 C 0.087 3.913 19 N -0.466 5.466 20 C 0.036 3.964 21 S 0.378 5.622 22 C -0.384 4.384 23 C 0.540 3.460 24 F -0.170 7.170 25 F -0.162 7.162 26 F -0.175 7.175 27 H 0.245 0.755 28 H 0.036 0.964 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.409 0.591 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.193 -7.362 -4.859 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.222 1.222 5 H -0.191 1.191 6 H -0.219 1.219 7 C -0.331 4.331 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.018 3.982 11 C -0.171 4.171 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.003 3.997 15 N -0.336 5.336 16 C 0.360 3.640 17 O -0.434 6.434 18 C -0.057 4.057 19 N -0.181 5.181 20 C -0.259 4.259 21 S 0.638 5.362 22 C -0.509 4.509 23 C 0.484 3.516 24 F -0.151 7.151 25 F -0.143 7.143 26 F -0.156 7.156 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.244 0.756 35 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 19.912 -7.152 -4.454 21.621 hybrid contribution -1.016 1.276 0.417 1.684 sum 18.896 -5.875 -4.037 20.196 Atomic orbital electron populations 1.69993 1.06094 1.25129 1.58906 1.25422 0.96343 1.00158 1.03985 0.85423 0.78203 0.80690 0.77338 1.22157 1.19071 1.21884 1.19129 0.90360 0.82498 1.41075 0.89947 1.45980 1.03753 0.99928 1.85882 1.21990 0.87637 0.92071 0.96475 1.23439 0.95390 0.98213 1.00027 1.22601 0.92785 0.84903 0.97059 0.91063 1.21816 0.82489 0.99533 0.95838 1.45855 1.05380 1.59227 1.23101 1.17448 0.83063 0.78875 0.84647 1.90826 1.87029 1.44137 1.21378 1.20151 0.97971 0.92347 0.95188 1.67232 1.11686 1.30755 1.08402 1.29718 0.95377 0.96521 1.04313 1.82583 1.15294 1.22395 1.15976 1.25848 1.10801 1.04724 1.09516 1.17157 0.74961 0.78527 0.81002 1.93268 1.95759 1.79481 1.46583 1.93220 1.68865 1.55605 1.96636 1.93327 1.37299 1.89722 1.95296 0.94555 0.94581 0.95761 0.87934 0.90206 0.93384 0.89357 0.75562 0.71506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.74 11.51 21.65 0.25 -57.49 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.95 46.70 29.55 68.60 2.03 48.73 16 4 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 7 C -0.20 -11.01 10.55 84.03 0.89 -10.13 16 8 H 0.08 4.35 7.50 -2.91 -0.02 4.33 16 9 N -0.63 -30.68 3.65 -714.39 -2.61 -33.29 16 10 C 0.14 6.57 7.37 83.09 0.61 7.18 16 11 C -0.13 -4.52 8.02 30.85 0.25 -4.27 16 12 C 0.13 4.91 4.11 41.80 0.17 5.08 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.13 4.58 5.52 86.38 0.48 5.06 16 15 N -0.69 -24.57 5.33 -466.52 -2.49 -27.06 16 16 C 0.58 21.31 6.69 86.62 0.58 21.89 16 17 O -0.56 -23.71 16.99 -4.14 -0.07 -23.78 16 18 C 0.09 2.62 6.46 40.56 0.26 2.88 16 19 N -0.47 -11.11 10.68 -193.02 -2.06 -13.17 16 20 C 0.04 0.46 12.17 130.71 1.59 2.05 16 21 S 0.38 5.30 22.38 -56.49 -1.26 4.03 16 22 C -0.38 -10.39 5.81 24.99 0.15 -10.25 16 23 C 0.54 17.15 3.07 71.23 0.22 17.37 16 24 F -0.17 -5.89 17.18 44.97 0.77 -5.12 16 25 F -0.16 -4.36 16.81 44.97 0.76 -3.61 16 26 F -0.18 -6.78 16.81 44.97 0.76 -6.03 16 27 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.04 1.89 7.14 -2.39 -0.02 1.88 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.41 14.22 8.36 -92.71 -0.77 13.45 16 35 H 0.27 0.30 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -76.85 335.70 2.12 -74.73 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.40 Total: 8.52 kcal Atomic # 6 Polarization: 27.88 SS G_CDS: 5.66 Total: 33.54 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -6.91 Total: -131.01 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.07 Total: -23.78 kcal Atomic # 9 Polarization: -17.04 SS G_CDS: 2.28 Total: -14.75 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.26 Total: 4.03 kcal Total: -76.85 2.12 -74.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038511621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.289 kcal (2) G-P(sol) polarization free energy of solvation -76.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds