Wall clock time and date at job start Tue Mar 31 2020 18:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99364 * 2 1 4 4 O 1.21693 * 119.99621 * 185.08394 * 3 2 1 5 5 C 1.46680 * 120.00260 * 5.08135 * 3 2 1 6 6 S 1.76218 * 126.12606 * 90.01213 * 5 3 2 7 7 C 1.70956 * 90.31257 * 179.97438 * 6 5 3 8 8 N 1.29432 * 110.39251 * 0.34674 * 7 6 5 9 9 C 1.30946 * 117.36261 * 359.72517 * 8 7 6 10 10 C 1.50697 * 122.90772 * 180.02562 * 9 8 7 11 11 F 1.39898 * 109.47258 * 270.77193 * 10 9 8 12 12 F 1.39904 * 109.46544 * 30.77107 * 10 9 8 13 13 F 1.39900 * 109.47502 * 150.76769 * 10 9 8 14 14 C 1.46492 * 120.00574 * 180.02562 * 2 1 3 15 15 C 1.53497 * 114.21078 * 59.99088 * 14 2 1 16 16 N 1.47063 * 87.99289 * 220.15441 * 15 14 2 17 17 C 1.36929 * 136.05850 * 207.08889 * 16 15 14 18 18 H 1.08001 * 120.00264 * 6.24976 * 17 16 15 19 19 C 1.38814 * 120.00240 * 186.24640 * 17 16 15 20 20 N 1.31619 * 120.00451 * 194.23462 * 19 17 16 21 21 Si 1.86806 * 119.99526 * 14.23422 * 19 17 16 22 22 H 1.48497 * 109.47475 * 269.99801 * 21 19 17 23 23 H 1.48498 * 109.47326 * 30.00134 * 21 19 17 24 24 H 1.48508 * 109.46889 * 149.99924 * 21 19 17 25 25 C 1.47067 * 87.88244 * 27.33965 * 16 15 14 26 26 H 1.09000 * 109.46803 * 266.07442 * 1 2 3 27 27 H 1.08994 * 109.47607 * 26.08111 * 1 2 3 28 28 H 1.09003 * 109.46807 * 146.08624 * 1 2 3 29 29 H 1.07997 * 124.80425 * 180.10157 * 7 6 5 30 30 H 1.08995 * 113.28789 * 193.06436 * 14 2 1 31 31 H 1.09005 * 113.46546 * 105.36490 * 15 14 2 32 32 H 1.09008 * 113.46680 * 334.93313 * 15 14 2 33 33 H 0.96993 * 119.99741 * 354.95205 * 20 19 17 34 34 H 1.09004 * 113.46768 * 87.44163 * 25 16 15 35 35 H 1.08998 * 113.47230 * 217.88075 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3521 1.1694 -0.0934 5 6 1.4096 2.4350 0.1125 6 16 1.0026 3.2701 1.6099 7 6 0.2372 4.5128 0.7198 8 7 0.3062 4.2669 -0.5490 9 6 0.9216 3.1713 -0.9172 10 6 1.0751 2.7637 -2.3598 11 9 -0.0251 1.9904 -2.7455 12 9 1.1455 3.9075 -3.1624 13 9 2.2473 2.0152 -2.5109 14 6 2.1976 -1.2686 -0.0006 15 6 1.9061 -2.1633 -1.2133 16 7 1.9170 -3.3161 -0.3002 17 6 2.1886 -4.6541 -0.4047 18 1 2.5749 -5.0561 -1.3297 19 6 1.9675 -5.4939 0.6783 20 7 2.4790 -6.7066 0.6859 21 14 0.9440 -4.9027 2.1248 22 1 1.8292 -4.2545 3.1255 23 1 -0.0660 -3.9235 1.6493 24 1 0.2550 -6.0605 2.7497 25 6 1.5017 -2.4005 0.7732 26 1 -0.3633 -0.0704 1.0253 27 1 -0.3634 0.9229 -0.4518 28 1 -0.3633 -0.8529 -0.5734 29 1 -0.2401 5.3784 1.1549 30 1 3.2576 -1.1541 0.2258 31 1 2.7146 -2.1807 -1.9442 32 1 0.9320 -1.9773 -1.6658 33 1 2.9481 -7.0400 -0.0949 34 1 0.4210 -2.2770 0.8444 35 1 1.9656 -2.6200 1.7348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042953939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:00 Heat of formation + Delta-G solvation = -50.881326 kcal Electronic energy + Delta-G solvation = -27507.945463 eV Core-core repulsion = 23028.515291 eV Total energy + Delta-G solvation = -4479.430172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.38834 -47.89198 -47.86658 -40.89046 -39.85210 -38.15821 -34.94361 -32.46720 -31.80203 -28.58419 -27.74812 -26.92427 -25.42888 -25.26758 -23.48106 -21.49608 -20.60299 -19.44732 -19.06516 -18.80627 -18.37293 -17.61721 -17.41829 -17.08868 -16.62528 -15.69739 -15.23233 -15.17046 -14.93429 -14.63897 -14.57200 -14.26976 -14.10546 -13.98995 -13.98148 -13.75380 -13.37389 -13.33133 -13.08127 -12.50108 -12.18761 -12.11777 -11.99941 -11.76490 -11.31468 -10.73329 -10.65401 -10.34120 -10.29127 -10.03401 -9.85705 -9.73336 -9.31571 -8.81789 -8.56402 -7.28576 -6.38469 -3.31121 -0.32004 0.29570 0.86137 1.71316 2.09183 2.43346 2.77785 3.17954 3.33891 3.39812 3.55423 3.65079 3.95504 4.06526 4.22017 4.50506 4.52351 4.71360 4.92430 4.95964 5.00259 5.29277 5.34898 5.50418 5.68250 5.70871 6.06684 6.16200 6.23352 6.31901 6.73942 6.77685 6.98014 7.18364 7.81405 8.17317 8.89804 9.41558 10.24964 11.12133 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.003797 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.277310 B = 7372.824105 C = 8111.559028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.582 5.582 3 C 0.581 3.419 4 O -0.502 6.502 5 C -0.214 4.214 6 S 0.260 5.740 7 C 0.016 3.984 8 N -0.437 5.437 9 C 0.009 3.991 10 C 0.542 3.458 11 F -0.165 7.165 12 F -0.162 7.162 13 F -0.156 7.156 14 C 0.100 3.900 15 C 0.109 3.891 16 N -0.615 5.615 17 C -0.306 4.306 18 H 0.085 0.915 19 C -0.021 4.021 20 N -0.928 5.928 21 Si 1.062 2.938 22 H -0.292 1.292 23 H -0.282 1.282 24 H -0.294 1.294 25 C 0.095 3.905 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.218 0.782 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.052 0.948 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 25.323 1.470 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.315 5.315 3 C 0.363 3.637 4 O -0.377 6.377 5 C -0.341 4.341 6 S 0.517 5.483 7 C -0.280 4.280 8 N -0.149 5.149 9 C -0.130 4.130 10 C 0.484 3.516 11 F -0.147 7.147 12 F -0.143 7.143 13 F -0.137 7.137 14 C -0.003 4.003 15 C -0.019 4.019 16 N -0.342 5.342 17 C -0.432 4.432 18 H 0.103 0.897 19 C -0.221 4.221 20 N -0.570 5.570 21 Si 0.893 3.107 22 H -0.220 1.220 23 H -0.208 1.208 24 H -0.221 1.221 25 C -0.031 4.031 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.147 0.853 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.764 24.814 3.603 26.249 hybrid contribution 0.337 0.293 -2.689 2.726 sum -7.427 25.107 0.914 26.199 Atomic orbital electron populations 1.21960 0.79181 1.03609 1.02768 1.47864 1.07284 1.05406 1.70932 1.16776 0.86775 0.81758 0.78384 1.90900 1.12366 1.86124 1.48292 1.25833 1.06847 1.03471 0.97980 1.84288 1.45440 1.12807 1.05778 1.28721 1.03473 1.04861 0.90991 1.65670 1.16274 1.16100 1.16838 1.20188 1.04380 0.94377 0.94084 1.17201 0.74721 0.75335 0.84302 1.93253 1.53805 1.75633 1.91977 1.93236 1.95967 1.49926 1.75211 1.93329 1.47818 1.76668 1.95891 1.23804 0.97800 0.78690 1.00022 1.22770 0.99007 0.86334 0.93757 1.45872 1.79489 1.03868 1.05021 1.20128 1.41169 0.79576 1.02351 0.89708 1.25780 1.00557 0.94796 1.00934 1.70889 1.37483 1.18032 1.30599 0.83803 0.76675 0.74694 0.75513 1.22006 1.20795 1.22116 1.23121 0.97732 0.87732 0.94539 0.91604 0.91658 0.89333 0.76585 0.85324 0.92849 0.94249 0.92671 0.93087 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.85 59.85 0.53 1.31 16 2 N -0.58 -8.58 3.12 -175.10 -0.55 -9.13 16 3 C 0.58 8.70 5.65 -12.85 -0.07 8.62 16 4 O -0.50 -9.16 16.31 5.20 0.08 -9.08 16 5 C -0.21 -2.54 4.53 -37.10 -0.17 -2.70 16 6 S 0.26 1.89 23.21 -107.50 -2.50 -0.61 16 7 C 0.02 0.10 12.22 51.75 0.63 0.73 16 8 N -0.44 -4.48 10.32 -11.53 -0.12 -4.60 16 9 C 0.01 0.11 5.69 -83.89 -0.48 -0.37 16 10 C 0.54 7.09 3.42 36.00 0.12 7.21 16 11 F -0.17 -2.10 16.82 2.25 0.04 -2.06 16 12 F -0.16 -2.10 17.16 2.25 0.04 -2.06 16 13 F -0.16 -2.34 15.07 2.25 0.03 -2.30 16 14 C 0.10 1.78 4.55 -67.67 -0.31 1.48 16 15 C 0.11 2.14 8.25 -8.52 -0.07 2.07 16 16 N -0.61 -14.77 3.64 -184.63 -0.67 -15.44 16 17 C -0.31 -8.67 11.04 -15.06 -0.17 -8.84 16 18 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 19 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 20 N -0.93 -28.89 13.70 55.49 0.76 -28.13 16 21 Si 1.06 25.66 25.46 -169.99 -4.33 21.33 16 22 H -0.29 -6.79 6.98 56.52 0.39 -6.40 16 23 H -0.28 -6.13 5.55 56.52 0.31 -5.82 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C 0.10 1.91 5.04 -8.38 -0.04 1.87 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.67 5.94 -51.93 -0.31 0.36 16 28 H 0.09 1.07 6.35 -51.93 -0.33 0.74 16 29 H 0.22 0.41 8.06 -52.49 -0.42 -0.01 16 30 H 0.13 2.44 7.33 -51.93 -0.38 2.06 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.73 6.92 -51.92 -0.36 0.37 16 33 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 34 H 0.05 0.95 5.58 -51.93 -0.29 0.66 16 35 H 0.06 1.20 6.03 -51.93 -0.31 0.88 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -34.39 318.47 -5.44 -39.83 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -2.92 Total: -3.24 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -0.12 Total: 10.68 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.58 Total: -57.29 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -4.33 Total: 21.33 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.50 Total: -0.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.39 -5.44 -39.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042953939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.049 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds