Wall clock time and date at job start Tue Mar 31 2020 18:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99779 * 2 1 4 4 O 1.21631 * 120.00332 * 5.50088 * 3 2 1 5 5 C 1.47269 * 119.99712 * 185.50105 * 3 2 1 6 6 N 1.33560 * 123.14463 * 284.50351 * 5 3 2 7 7 C 1.28652 * 115.76851 * 180.02562 * 6 5 3 8 8 S 1.70774 * 110.55826 * 0.02562 * 7 6 5 9 9 C 1.35215 * 123.13926 * 104.21226 * 5 3 2 10 10 C 1.50699 * 125.58473 * 359.97438 * 9 5 3 11 11 F 1.39903 * 109.46609 * 90.26705 * 10 9 5 12 12 F 1.39897 * 109.47074 * 210.26703 * 10 9 5 13 13 F 1.39893 * 109.47366 * 330.26837 * 10 9 5 14 14 C 1.46504 * 120.00000 * 179.97438 * 2 1 3 15 15 C 1.53496 * 114.20347 * 299.99909 * 14 2 1 16 16 N 1.47066 * 87.98328 * 87.52268 * 15 14 2 17 17 C 1.36942 * 136.05630 * 207.08609 * 16 15 14 18 18 H 1.08001 * 119.99591 * 6.57282 * 17 16 15 19 19 C 1.38814 * 119.99985 * 186.57550 * 17 16 15 20 20 N 1.31619 * 119.99967 * 6.25485 * 19 17 16 21 21 Si 1.86795 * 119.99985 * 186.25608 * 19 17 16 22 22 H 1.48498 * 109.47191 * 265.01439 * 21 19 17 23 23 H 1.48504 * 109.47197 * 25.01140 * 21 19 17 24 24 H 1.48505 * 109.47176 * 145.01088 * 21 19 17 25 25 C 1.47064 * 87.88713 * 27.33890 * 16 15 14 26 26 H 1.08996 * 109.47315 * 264.36968 * 1 2 3 27 27 H 1.08998 * 109.46746 * 24.37434 * 1 2 3 28 28 H 1.09004 * 109.46938 * 144.37163 * 1 2 3 29 29 H 1.07995 * 124.71907 * 179.97438 * 7 6 5 30 30 H 1.09001 * 113.27863 * 166.93320 * 14 2 1 31 31 H 1.08996 * 113.47108 * 332.74090 * 15 14 2 32 32 H 1.09003 * 113.46512 * 202.30005 * 15 14 2 33 33 H 0.96997 * 119.99819 * 179.97438 * 20 19 17 34 34 H 1.08999 * 113.46705 * 87.44052 * 25 16 15 35 35 H 1.09008 * 113.46989 * 217.87848 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5349 2.2182 0.1010 5 6 3.6064 1.1702 -0.1223 6 7 4.4235 0.8400 0.8813 7 6 5.6818 0.8920 0.6184 8 16 5.9371 1.3870 -0.9959 9 6 4.2525 1.5019 -1.2628 10 6 3.5952 1.9099 -2.5561 11 9 3.4263 3.2986 -2.5754 12 9 4.4021 1.5232 -3.6315 13 9 2.3472 1.2868 -2.6618 14 6 2.1975 -1.2688 0.0006 15 6 1.9059 -2.1632 1.2134 16 7 0.7742 -2.7255 0.4612 17 6 -0.4281 -3.3019 0.7733 18 1 -0.7650 -3.3267 1.7991 19 6 -1.2139 -3.8544 -0.2289 20 7 -0.7514 -3.9354 -1.4584 21 14 -2.9277 -4.4829 0.1677 22 1 -2.8696 -5.9420 0.4378 23 1 -3.4484 -3.7779 1.3665 24 1 -3.8275 -4.2284 -0.9860 25 6 1.5048 -2.4023 -0.7735 26 1 -0.3634 -0.1008 1.0227 27 1 -0.3633 0.9361 -0.4241 28 1 -0.3633 -0.8353 -0.5987 29 1 6.4672 0.6562 1.3211 30 1 3.2576 -1.1543 -0.2259 31 1 1.6038 -1.6067 2.1006 32 1 2.6942 -2.8878 1.4179 33 1 -1.3003 -4.3218 -2.1586 34 1 2.1872 -3.1899 -1.0929 35 1 0.8609 -2.0494 -1.5792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043335330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:04 Heat of formation + Delta-G solvation = -53.583007 kcal Electronic energy + Delta-G solvation = -27910.853186 eV Core-core repulsion = 23431.305860 eV Total energy + Delta-G solvation = -4479.547326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.30117 -47.84856 -47.74169 -40.88699 -39.15652 -37.84124 -33.90511 -32.18933 -32.02671 -28.44644 -27.73182 -26.02193 -24.71248 -24.57870 -23.54917 -22.13256 -20.39293 -19.83168 -18.87500 -18.67452 -17.71428 -17.43581 -16.94502 -16.50931 -15.73424 -15.31122 -14.95623 -14.78064 -14.61010 -14.53577 -14.42782 -14.17969 -14.09214 -13.89078 -13.88204 -13.81505 -12.88715 -12.70832 -12.65269 -12.42450 -12.22074 -11.56871 -11.42138 -11.04155 -10.89233 -10.74050 -10.35152 -10.27740 -10.22767 -10.07732 -9.95425 -9.52329 -9.37589 -8.87804 -8.12647 -6.98773 -5.86691 -3.18342 -0.10334 0.59547 1.04277 1.98909 2.39232 2.56346 3.15166 3.35316 3.41723 3.43223 3.43781 3.91944 3.99811 4.14959 4.39082 4.54985 4.73311 5.07843 5.24386 5.28792 5.37244 5.78380 5.99733 6.09773 6.33123 6.41033 6.50117 6.66678 6.86014 6.95302 6.97920 7.04972 7.39787 7.75297 7.87519 8.22507 8.94999 9.61329 10.53104 11.31494 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.003995 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.781049 B = 7006.281546 C = 7405.298974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.550 5.550 3 C 0.581 3.419 4 O -0.528 6.528 5 C 0.117 3.883 6 N -0.433 5.433 7 C 0.025 3.975 8 S 0.278 5.722 9 C -0.358 4.358 10 C 0.551 3.449 11 F -0.164 7.164 12 F -0.170 7.170 13 F -0.155 7.155 14 C 0.075 3.925 15 C 0.110 3.890 16 N -0.603 5.603 17 C -0.218 4.218 18 H 0.082 0.918 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.279 1.279 24 H -0.289 1.289 25 C 0.154 3.846 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.218 0.782 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.255 0.745 34 H 0.043 0.957 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.735 10.646 -0.958 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.279 5.279 3 C 0.364 3.636 4 O -0.405 6.405 5 C -0.025 4.025 6 N -0.147 5.147 7 C -0.272 4.272 8 S 0.536 5.464 9 C -0.482 4.482 10 C 0.494 3.506 11 F -0.145 7.145 12 F -0.151 7.151 13 F -0.136 7.136 14 C -0.031 4.031 15 C -0.018 4.018 16 N -0.329 5.329 17 C -0.345 4.345 18 H 0.100 0.900 19 C -0.201 4.201 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.204 1.204 24 H -0.216 1.216 25 C 0.028 3.972 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.234 0.766 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.775 11.015 -1.033 20.095 hybrid contribution -1.719 -0.681 0.209 1.861 sum 15.056 10.334 -0.824 18.280 Atomic orbital electron populations 1.21785 0.76524 1.03143 1.03140 1.47234 1.07952 1.04122 1.68571 1.17025 0.83853 0.84640 0.78119 1.90842 1.67971 1.30995 1.50652 1.20506 0.97207 0.97196 0.87552 1.67266 1.01886 1.15883 1.29645 1.28874 0.97242 1.01395 0.99711 1.82819 0.97724 1.57262 1.08605 1.25638 1.02156 1.20362 1.00019 1.16816 0.76796 0.75376 0.81565 1.93264 1.95413 1.29307 1.96556 1.93229 1.73065 1.90940 1.57911 1.93313 1.42005 1.82202 1.96058 1.22900 0.94031 0.84248 1.01917 1.22771 0.91094 0.93217 0.94673 1.45759 1.14040 1.71321 1.01818 1.18908 0.91016 1.30845 0.93751 0.90033 1.24800 0.99038 1.00451 0.95815 1.69830 1.36562 1.49594 1.00494 0.86134 0.83890 0.78630 0.77324 1.21649 1.20434 1.21550 1.22381 0.92494 0.90203 0.92167 0.92328 0.91884 0.88021 0.76594 0.89943 0.93541 0.93955 0.93490 0.93969 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 9.44 59.85 0.56 2.49 16 2 N -0.55 -10.62 3.12 -174.88 -0.54 -11.17 16 3 C 0.58 11.00 5.48 -12.59 -0.07 10.93 16 4 O -0.53 -11.27 16.66 5.25 0.09 -11.19 16 5 C 0.12 1.81 4.57 -84.52 -0.39 1.43 16 6 N -0.43 -5.78 10.43 -12.36 -0.13 -5.91 16 7 C 0.03 0.21 12.17 51.43 0.63 0.84 16 8 S 0.28 2.26 22.65 -107.50 -2.43 -0.18 16 9 C -0.36 -4.74 5.85 -35.39 -0.21 -4.95 16 10 C 0.55 7.80 3.41 36.01 0.12 7.92 16 11 F -0.16 -2.37 17.30 2.25 0.04 -2.33 16 12 F -0.17 -2.11 17.04 2.25 0.04 -2.07 16 13 F -0.15 -2.58 15.43 2.25 0.03 -2.55 16 14 C 0.07 1.39 4.58 -67.68 -0.31 1.08 16 15 C 0.11 2.19 8.31 -8.51 -0.07 2.12 16 16 N -0.60 -14.48 2.50 -184.62 -0.46 -14.94 16 17 C -0.22 -5.76 10.55 -15.06 -0.16 -5.92 16 18 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 19 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 20 N -0.92 -26.02 11.80 55.49 0.66 -25.36 16 21 Si 0.91 21.43 29.56 -169.99 -5.02 16.41 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.15 3.42 6.27 -8.37 -0.05 3.36 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.22 7.34 -51.93 -0.38 0.83 16 28 H 0.10 2.30 5.77 -51.93 -0.30 2.00 16 29 H 0.22 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.08 1.37 6.45 -51.93 -0.33 1.04 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.72 6.63 -51.92 -0.34 1.38 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -32.11 326.89 -5.87 -37.98 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -3.02 Total: -2.72 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: -0.04 Total: 19.10 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.48 Total: -57.38 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.43 Total: -0.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.11 -5.87 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043335330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.600 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds