Wall clock time and date at job start Tue Mar 31 2020 18:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99779 * 2 1 4 4 O 1.21631 * 120.00332 * 5.50088 * 3 2 1 5 5 C 1.47269 * 119.99712 * 185.50105 * 3 2 1 6 6 N 1.33560 * 123.14463 * 284.50351 * 5 3 2 7 7 C 1.28652 * 115.76851 * 180.02562 * 6 5 3 8 8 S 1.70774 * 110.55826 * 0.02562 * 7 6 5 9 9 C 1.35215 * 123.13926 * 104.21226 * 5 3 2 10 10 C 1.50699 * 125.58473 * 359.97438 * 9 5 3 11 11 F 1.39903 * 109.46609 * 90.26705 * 10 9 5 12 12 F 1.39897 * 109.47074 * 210.26703 * 10 9 5 13 13 F 1.39893 * 109.47366 * 330.26837 * 10 9 5 14 14 C 1.46504 * 120.00000 * 179.97438 * 2 1 3 15 15 C 1.53496 * 114.20347 * 299.99909 * 14 2 1 16 16 N 1.47066 * 87.98328 * 87.52268 * 15 14 2 17 17 C 1.36942 * 136.05630 * 207.08609 * 16 15 14 18 18 H 1.08001 * 119.99591 * 6.57282 * 17 16 15 19 19 C 1.38814 * 119.99985 * 186.57550 * 17 16 15 20 20 N 1.31619 * 119.99967 * 6.25485 * 19 17 16 21 21 Si 1.86795 * 119.99985 * 186.25608 * 19 17 16 22 22 H 1.48498 * 109.47191 * 265.01439 * 21 19 17 23 23 H 1.48504 * 109.47197 * 25.01140 * 21 19 17 24 24 H 1.48505 * 109.47176 * 145.01088 * 21 19 17 25 25 C 1.47064 * 87.88713 * 27.33890 * 16 15 14 26 26 H 1.08996 * 109.47315 * 264.36968 * 1 2 3 27 27 H 1.08998 * 109.46746 * 24.37434 * 1 2 3 28 28 H 1.09004 * 109.46938 * 144.37163 * 1 2 3 29 29 H 1.07995 * 124.71907 * 179.97438 * 7 6 5 30 30 H 1.09001 * 113.27863 * 166.93320 * 14 2 1 31 31 H 1.08996 * 113.47108 * 332.74090 * 15 14 2 32 32 H 1.09003 * 113.46512 * 202.30005 * 15 14 2 33 33 H 0.96997 * 119.99819 * 179.97438 * 20 19 17 34 34 H 1.08999 * 113.46705 * 87.44052 * 25 16 15 35 35 H 1.09008 * 113.46989 * 217.87848 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5349 2.2182 0.1010 5 6 3.6064 1.1702 -0.1223 6 7 4.4235 0.8400 0.8813 7 6 5.6818 0.8920 0.6184 8 16 5.9371 1.3870 -0.9959 9 6 4.2525 1.5019 -1.2628 10 6 3.5952 1.9099 -2.5561 11 9 3.4263 3.2986 -2.5754 12 9 4.4021 1.5232 -3.6315 13 9 2.3472 1.2868 -2.6618 14 6 2.1975 -1.2688 0.0006 15 6 1.9059 -2.1632 1.2134 16 7 0.7742 -2.7255 0.4612 17 6 -0.4281 -3.3019 0.7733 18 1 -0.7650 -3.3267 1.7991 19 6 -1.2139 -3.8544 -0.2289 20 7 -0.7514 -3.9354 -1.4584 21 14 -2.9277 -4.4829 0.1677 22 1 -2.8696 -5.9420 0.4378 23 1 -3.4484 -3.7779 1.3665 24 1 -3.8275 -4.2284 -0.9860 25 6 1.5048 -2.4023 -0.7735 26 1 -0.3634 -0.1008 1.0227 27 1 -0.3633 0.9361 -0.4241 28 1 -0.3633 -0.8353 -0.5987 29 1 6.4672 0.6562 1.3211 30 1 3.2576 -1.1543 -0.2259 31 1 1.6038 -1.6067 2.1006 32 1 2.6942 -2.8878 1.4179 33 1 -1.3003 -4.3218 -2.1586 34 1 2.1872 -3.1899 -1.0929 35 1 0.8609 -2.0494 -1.5792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043335330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:03 Heat of formation + Delta-G solvation = -75.076684 kcal Electronic energy + Delta-G solvation = -27911.785222 eV Core-core repulsion = 23431.305860 eV Total energy + Delta-G solvation = -4480.479362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.40857 -48.94393 -48.88499 -42.08546 -40.51085 -39.38941 -35.58104 -33.98002 -33.15217 -30.00295 -29.32703 -27.35991 -26.42043 -25.53951 -25.27681 -23.42485 -21.86239 -20.92292 -20.07826 -19.78730 -19.22690 -18.51061 -18.38252 -18.02979 -17.17621 -16.74736 -16.46304 -15.98838 -15.86286 -15.69883 -15.63006 -15.48441 -15.42808 -15.30090 -15.03256 -15.01769 -14.61266 -14.30588 -14.04536 -13.69152 -13.33327 -13.23613 -13.21979 -12.79116 -12.73088 -12.51283 -12.07123 -11.85285 -11.51003 -11.39580 -11.19457 -11.03835 -10.86532 -10.17814 -9.73460 -8.93471 -7.91899 -5.22985 -0.97118 -0.18855 0.26226 0.99123 1.28348 1.36007 1.47045 1.48432 1.56963 1.79125 2.38867 2.47249 2.77481 2.93736 3.05762 3.30609 3.39715 3.62103 3.64895 3.77232 4.19738 4.31756 4.44459 4.58311 4.64399 4.78230 4.87724 4.96856 5.15002 5.20559 5.30661 5.48491 5.87857 6.15758 6.24198 6.74913 6.90557 7.59808 8.58055 9.26436 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.003995 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.781049 B = 7006.281546 C = 7405.298974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.558 5.558 3 C 0.582 3.418 4 O -0.562 6.562 5 C 0.092 3.908 6 N -0.468 5.468 7 C 0.038 3.962 8 S 0.380 5.620 9 C -0.383 4.383 10 C 0.546 3.454 11 F -0.169 7.169 12 F -0.160 7.160 13 F -0.177 7.177 14 C 0.103 3.897 15 C 0.115 3.885 16 N -0.627 5.627 17 C -0.219 4.219 18 H 0.082 0.918 19 C -0.056 4.056 20 N -0.949 5.949 21 Si 0.970 3.030 22 H -0.289 1.289 23 H -0.269 1.269 24 H -0.296 1.296 25 C 0.155 3.845 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.267 0.733 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.248 0.752 34 H 0.042 0.958 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.865 10.939 0.009 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.287 5.287 3 C 0.367 3.633 4 O -0.441 6.441 5 C -0.051 4.051 6 N -0.183 5.183 7 C -0.258 4.258 8 S 0.640 5.360 9 C -0.508 4.508 10 C 0.490 3.510 11 F -0.151 7.151 12 F -0.141 7.141 13 F -0.158 7.158 14 C -0.002 4.002 15 C -0.012 4.012 16 N -0.354 5.354 17 C -0.347 4.347 18 H 0.100 0.900 19 C -0.250 4.250 20 N -0.598 5.598 21 Si 0.799 3.201 22 H -0.216 1.216 23 H -0.194 1.194 24 H -0.223 1.223 25 C 0.028 3.972 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.283 0.717 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.968 11.319 -0.045 22.953 hybrid contribution -2.506 -0.688 -0.111 2.601 sum 17.462 10.632 -0.156 20.445 Atomic orbital electron populations 1.21469 0.77847 1.01942 1.02038 1.47289 1.07484 1.04882 1.69028 1.17518 0.85742 0.83572 0.76454 1.90802 1.69519 1.31941 1.51804 1.19985 0.95378 1.00397 0.89304 1.67263 1.03552 1.18033 1.29420 1.29700 0.96566 0.98492 1.01009 1.82543 0.92413 1.54198 1.06879 1.25820 1.05597 1.20662 0.98721 1.17007 0.76308 0.75076 0.82612 1.93248 1.95440 1.29703 1.96665 1.93243 1.72493 1.90802 1.57572 1.93268 1.43709 1.82587 1.96258 1.22649 0.94913 0.82899 0.99728 1.22890 0.90138 0.93409 0.94727 1.45958 1.14692 1.71182 1.03547 1.19171 0.92237 1.29592 0.93715 0.89979 1.25473 1.02199 1.01526 0.95781 1.69984 1.37515 1.51071 1.01183 0.85194 0.80051 0.77922 0.76975 1.21585 1.19405 1.22324 1.22323 0.92081 0.91543 0.91233 0.92945 0.91717 0.90804 0.71728 0.86929 0.93606 0.91597 0.94254 0.94051 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.60 9.44 127.77 1.21 5.81 16 2 N -0.56 -21.83 3.12 -825.45 -2.57 -24.40 16 3 C 0.58 22.10 5.48 86.62 0.48 22.58 16 4 O -0.56 -24.53 16.66 -4.13 -0.07 -24.59 16 5 C 0.09 2.72 4.57 40.56 0.19 2.90 16 6 N -0.47 -11.05 10.43 -193.02 -2.01 -13.07 16 7 C 0.04 0.45 12.17 130.71 1.59 2.04 16 8 S 0.38 4.46 22.65 -56.49 -1.28 3.18 16 9 C -0.38 -9.35 5.85 24.99 0.15 -9.20 16 10 C 0.55 15.02 3.41 71.24 0.24 15.27 16 11 F -0.17 -4.81 17.30 44.97 0.78 -4.03 16 12 F -0.16 -3.71 17.04 44.97 0.77 -2.95 16 13 F -0.18 -6.04 15.43 44.97 0.69 -5.35 16 14 C 0.10 3.79 4.58 45.55 0.21 4.00 16 15 C 0.11 4.44 8.31 83.18 0.69 5.13 16 16 N -0.63 -30.35 2.50 -738.01 -1.84 -32.20 16 17 C -0.22 -11.73 10.55 84.03 0.89 -10.84 16 18 H 0.08 4.27 7.84 -2.91 -0.02 4.25 16 19 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 20 N -0.95 -55.37 11.80 21.65 0.26 -55.12 16 21 Si 0.97 44.89 29.56 68.60 2.03 46.91 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 25 C 0.15 6.96 6.27 83.27 0.52 7.49 16 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 2.64 7.34 -2.39 -0.02 2.62 16 28 H 0.07 3.53 5.77 -2.39 -0.01 3.52 16 29 H 0.27 0.18 8.06 -2.91 -0.02 0.16 16 30 H 0.11 3.50 6.45 -2.39 -0.02 3.48 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.98 6.63 -2.38 -0.02 1.96 16 Total: -1.00 -72.97 326.89 4.53 -68.44 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 1.16 Total: 0.62 kcal Atomic # 6 Polarization: 35.93 SS G_CDS: 6.62 Total: 42.55 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -6.17 Total: -124.78 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.07 Total: -24.59 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 2.24 Total: -12.32 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.28 Total: 3.18 kcal Total: -72.97 4.53 -68.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043335330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.640 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds