Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48506 * 109.46708 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47352 * 300.00164 * 3 2 1 6 6 H 1.48501 * 109.46893 * 60.00883 * 3 2 1 7 7 C 1.38814 * 119.99396 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00573 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00062 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.30507 * 32.83136 * 10 9 7 12 12 C 1.54783 * 110.52812 * 270.59319 * 10 9 7 13 13 N 1.48149 * 104.42102 * 265.22838 * 12 10 9 14 14 C 1.34778 * 127.83965 * 140.36816 * 13 12 10 15 15 O 1.21686 * 120.00000 * 185.71500 * 14 13 12 16 16 C 1.46685 * 119.99742 * 5.70892 * 14 13 12 17 17 C 1.35660 * 126.12785 * 186.79444 * 16 14 13 18 18 N 1.30941 * 114.19294 * 179.97438 * 17 16 14 19 19 C 1.29429 * 117.36242 * 0.02562 * 18 17 16 20 20 S 1.70950 * 110.39008 * 359.97438 * 19 18 17 21 21 C 1.48141 * 104.31994 * 320.10594 * 13 12 10 22 22 C 1.54289 * 110.34007 * 154.99712 * 10 9 7 23 23 H 1.08998 * 110.34076 * 0.02562 * 22 10 9 24 24 C 1.52999 * 110.43514 * 237.78919 * 22 10 9 25 25 F 1.39899 * 109.46794 * 302.95651 * 24 22 10 26 26 F 1.39901 * 109.47010 * 62.95774 * 24 22 10 27 27 F 1.39899 * 109.47142 * 182.95870 * 24 22 10 28 28 H 0.97009 * 119.99620 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99720 * 0.02562 * 9 7 2 30 30 H 1.08996 * 110.54259 * 146.48623 * 12 10 9 31 31 H 1.09009 * 110.46400 * 23.92742 * 12 10 9 32 32 H 1.08004 * 122.90648 * 359.95695 * 17 16 14 33 33 H 1.07999 * 124.80476 * 179.97438 * 19 18 17 34 34 H 1.09005 * 110.40674 * 158.63018 * 21 13 12 35 35 H 1.08997 * 110.41323 * 280.94345 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 2.9913 -3.5552 0.5519 12 6 2.3412 -4.1188 -1.4516 13 7 1.2260 -5.0408 -1.7696 14 6 0.5534 -5.1549 -2.9320 15 8 -0.4121 -5.8918 -3.0064 16 6 0.9853 -4.3908 -4.1072 17 6 0.3316 -4.3098 -5.2931 18 7 0.9283 -3.5591 -6.1847 19 6 2.0422 -2.9975 -5.8399 20 16 2.4460 -3.4131 -4.2316 21 6 1.0222 -5.8133 -0.5221 22 6 1.1911 -4.7771 0.6100 23 1 0.2202 -4.3834 0.9108 24 6 1.9025 -5.4093 1.8079 25 9 3.1518 -5.8937 1.4059 26 9 2.0754 -4.4470 2.8086 27 9 1.1308 -6.4652 2.3046 28 1 -0.4850 0.8402 0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 3.2952 -4.6430 -1.5065 31 1 2.3352 -3.2664 -2.1311 32 1 -0.6004 -4.8207 -5.4855 33 1 2.6330 -2.3569 -6.4779 34 1 0.0198 -6.2410 -0.4994 35 1 1.7721 -6.5995 -0.4350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099221136.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = -111.990966 kcal Electronic energy + Delta-G solvation = -27428.753834 eV Core-core repulsion = 22946.673749 eV Total energy + Delta-G solvation = -4482.080085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.97470 -47.48690 -47.38609 -40.17376 -39.32846 -37.53609 -34.20025 -32.37208 -30.97389 -30.22149 -27.82674 -26.63557 -25.22276 -24.33205 -22.59036 -21.32264 -20.49443 -19.53097 -18.62660 -18.38810 -18.09022 -17.65999 -16.79396 -16.46480 -16.19148 -15.43891 -14.99284 -14.57662 -14.41331 -14.33249 -14.18574 -13.96465 -13.87958 -13.77371 -13.69692 -13.56303 -13.43834 -13.39274 -13.22450 -12.31416 -12.17550 -11.82908 -11.57404 -11.36386 -11.03687 -10.99353 -10.96182 -10.23748 -10.13874 -9.95474 -9.63650 -9.42105 -9.30745 -9.02612 -8.67616 -7.27790 -5.99223 -3.32622 0.29409 1.25758 1.64961 2.50292 2.67282 3.02577 3.24491 3.30446 3.36267 3.39178 3.89414 3.97121 4.13345 4.26878 4.41289 4.59646 4.76398 4.92040 5.14722 5.15827 5.19486 5.31672 5.33380 5.44405 5.60087 5.78477 5.88406 5.93849 6.03362 6.08204 6.34967 7.44144 7.49551 7.62159 8.07582 8.14956 9.28335 9.75984 10.11234 11.21862 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.007859 B = 0.006495 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3561.726583 B = 4309.737055 C = 7005.508959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.001 4.001 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.077 0.923 9 N -0.707 5.707 10 C 0.183 3.817 11 H 0.083 0.917 12 C 0.061 3.939 13 N -0.610 5.610 14 C 0.622 3.378 15 O -0.534 6.534 16 C -0.286 4.286 17 C 0.112 3.888 18 N -0.482 5.482 19 C 0.002 3.998 20 S 0.215 5.785 21 C 0.121 3.879 22 C -0.167 4.167 23 H 0.131 0.869 24 C 0.465 3.535 25 F -0.183 7.183 26 F -0.172 7.172 27 F -0.186 7.186 28 H 0.258 0.742 29 H 0.388 0.612 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.200 0.800 34 H 0.098 0.902 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -10.398 -3.966 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.199 4.199 3 Si 0.738 3.262 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.069 3.931 11 H 0.100 0.900 12 C -0.066 4.066 13 N -0.342 5.342 14 C 0.410 3.590 15 O -0.413 6.413 16 C -0.410 4.410 17 C -0.047 4.047 18 N -0.195 5.195 19 C -0.292 4.292 20 S 0.471 5.529 21 C -0.002 4.002 22 C -0.189 4.189 23 H 0.149 0.851 24 C 0.410 3.590 25 F -0.165 7.165 26 F -0.153 7.153 27 F -0.168 7.168 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.202 0.798 33 H 0.217 0.783 34 H 0.116 0.884 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.998 -10.217 -3.992 13.011 hybrid contribution -0.558 0.648 0.019 0.856 sum 6.439 -9.569 -3.973 12.199 Atomic orbital electron populations 1.69673 1.05231 1.26123 1.55824 1.24792 0.95489 0.97931 1.01672 0.86129 0.78927 0.83765 0.77376 1.20227 1.21681 1.21601 1.19236 0.91179 0.83446 1.44909 0.90549 1.42446 1.05861 0.98981 1.87394 1.21045 0.94763 0.85591 0.91681 0.89963 1.24042 0.88523 0.92935 1.01146 1.48570 1.35840 1.38885 1.10949 1.16210 0.81687 0.80869 0.80185 1.90822 1.26440 1.40263 1.83743 1.25645 1.03160 1.11243 1.00982 1.22161 1.00401 0.95431 0.86698 1.66314 1.08419 1.10261 1.34511 1.29062 0.97453 1.02792 0.99857 1.84458 1.20368 1.39090 1.08995 1.22140 1.04017 0.92651 0.81412 1.23908 1.03399 0.98999 0.92563 0.85080 1.20250 0.77307 0.76363 0.85046 1.93156 1.44092 1.88725 1.90517 1.93240 1.95437 1.63243 1.63409 1.93175 1.75187 1.59148 1.89261 0.93161 0.77683 0.90654 0.88459 0.79781 0.78319 0.88399 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.90 13.06 55.49 0.72 -25.18 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 3 Si 0.91 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.30 9.96 -15.06 -0.15 -6.45 16 8 H 0.08 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.71 -15.43 5.13 -51.87 -0.27 -15.69 16 10 C 0.18 3.06 3.02 -66.32 -0.20 2.86 16 11 H 0.08 1.37 7.35 -51.93 -0.38 0.98 16 12 C 0.06 0.91 5.76 -2.20 -0.01 0.89 16 13 N -0.61 -9.36 3.31 -170.59 -0.56 -9.92 16 14 C 0.62 10.51 7.87 -12.85 -0.10 10.41 16 15 O -0.53 -10.18 17.13 5.20 0.09 -10.09 16 16 C -0.29 -4.39 6.38 -37.10 -0.24 -4.63 16 17 C 0.11 1.66 11.10 -18.85 -0.21 1.45 16 18 N -0.48 -6.91 10.51 -15.38 -0.16 -7.07 16 19 C 0.00 0.02 12.22 51.75 0.63 0.65 16 20 S 0.22 2.74 19.05 -107.50 -2.05 0.69 16 21 C 0.12 1.63 6.34 -2.41 -0.02 1.61 16 22 C -0.17 -2.42 2.83 -89.22 -0.25 -2.67 16 23 H 0.13 2.00 7.67 -51.93 -0.40 1.61 16 24 C 0.47 6.40 2.51 37.16 0.09 6.49 16 25 F -0.18 -2.39 16.05 2.25 0.04 -2.35 16 26 F -0.17 -2.72 17.07 2.25 0.04 -2.68 16 27 F -0.19 -2.46 17.11 2.25 0.04 -2.42 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 9.33 7.56 -40.82 -0.31 9.02 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.59 4.72 -30.06 -0.14 1.44 16 32 H 0.19 2.51 8.06 -52.48 -0.42 2.09 16 33 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.10 1.32 7.84 -51.93 -0.41 0.91 16 35 H 0.08 0.96 7.33 -51.93 -0.38 0.58 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -29.85 325.63 -5.61 -35.46 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.83 Total: 8.17 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -0.55 Total: 10.50 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.27 Total: -57.87 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.11 Total: -7.46 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.05 Total: 0.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.85 -5.61 -35.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099221136.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.526 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds