Wall clock time and date at job start Tue Mar 31 2020 18:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48506 * 109.46708 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47352 * 300.00164 * 3 2 1 6 6 H 1.48501 * 109.46893 * 60.00883 * 3 2 1 7 7 C 1.38814 * 119.99396 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00573 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00062 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.30507 * 32.83136 * 10 9 7 12 12 C 1.54783 * 110.52812 * 270.59319 * 10 9 7 13 13 N 1.48149 * 104.42102 * 265.22838 * 12 10 9 14 14 C 1.34778 * 127.83965 * 140.36816 * 13 12 10 15 15 O 1.21686 * 120.00000 * 185.71500 * 14 13 12 16 16 C 1.46685 * 119.99742 * 5.70892 * 14 13 12 17 17 C 1.35660 * 126.12785 * 186.79444 * 16 14 13 18 18 N 1.30941 * 114.19294 * 179.97438 * 17 16 14 19 19 C 1.29429 * 117.36242 * 0.02562 * 18 17 16 20 20 S 1.70950 * 110.39008 * 359.97438 * 19 18 17 21 21 C 1.48141 * 104.31994 * 320.10594 * 13 12 10 22 22 C 1.54289 * 110.34007 * 154.99712 * 10 9 7 23 23 H 1.08998 * 110.34076 * 0.02562 * 22 10 9 24 24 C 1.52999 * 110.43514 * 237.78919 * 22 10 9 25 25 F 1.39899 * 109.46794 * 302.95651 * 24 22 10 26 26 F 1.39901 * 109.47010 * 62.95774 * 24 22 10 27 27 F 1.39899 * 109.47142 * 182.95870 * 24 22 10 28 28 H 0.97009 * 119.99620 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99720 * 0.02562 * 9 7 2 30 30 H 1.08996 * 110.54259 * 146.48623 * 12 10 9 31 31 H 1.09009 * 110.46400 * 23.92742 * 12 10 9 32 32 H 1.08004 * 122.90648 * 359.95695 * 17 16 14 33 33 H 1.07999 * 124.80476 * 179.97438 * 19 18 17 34 34 H 1.09005 * 110.40674 * 158.63018 * 21 13 12 35 35 H 1.08997 * 110.41323 * 280.94345 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 2.9913 -3.5552 0.5519 12 6 2.3412 -4.1188 -1.4516 13 7 1.2260 -5.0408 -1.7696 14 6 0.5534 -5.1549 -2.9320 15 8 -0.4121 -5.8918 -3.0064 16 6 0.9853 -4.3908 -4.1072 17 6 0.3316 -4.3098 -5.2931 18 7 0.9283 -3.5591 -6.1847 19 6 2.0422 -2.9975 -5.8399 20 16 2.4460 -3.4131 -4.2316 21 6 1.0222 -5.8133 -0.5221 22 6 1.1911 -4.7771 0.6100 23 1 0.2202 -4.3834 0.9108 24 6 1.9025 -5.4093 1.8079 25 9 3.1518 -5.8937 1.4059 26 9 2.0754 -4.4470 2.8086 27 9 1.1308 -6.4652 2.3046 28 1 -0.4850 0.8402 0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 3.2952 -4.6430 -1.5065 31 1 2.3352 -3.2664 -2.1311 32 1 -0.6004 -4.8207 -5.4855 33 1 2.6330 -2.3569 -6.4779 34 1 0.0198 -6.2410 -0.4994 35 1 1.7721 -6.5995 -0.4350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099221136.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:01 Heat of formation + Delta-G solvation = -131.970891 kcal Electronic energy + Delta-G solvation = -27429.620229 eV Core-core repulsion = 22946.673749 eV Total energy + Delta-G solvation = -4482.946480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.11140 -48.58426 -48.56308 -41.38631 -40.46182 -38.86372 -35.86810 -33.76974 -32.52058 -31.40938 -29.26640 -27.75464 -26.36901 -25.96699 -23.95245 -22.51755 -21.76449 -20.62037 -19.89347 -19.55807 -19.33904 -19.02589 -18.22015 -17.67650 -17.40743 -16.73477 -16.53814 -15.76548 -15.61169 -15.48977 -15.38931 -15.21737 -15.19580 -14.99068 -14.94545 -14.80495 -14.71922 -14.59248 -14.51258 -13.66745 -13.41580 -13.25398 -12.94084 -12.74453 -12.58164 -12.47820 -12.28364 -12.03015 -11.76824 -11.46052 -11.10230 -10.70066 -10.50786 -10.18253 -9.87672 -9.07889 -7.95005 -5.26377 -0.77619 0.21395 0.60994 1.35637 1.49728 1.50469 1.52867 1.61067 1.85126 2.05573 2.53846 2.75094 2.78758 2.97268 3.25599 3.36157 3.47680 3.64682 3.74614 3.82238 3.96062 4.14936 4.15693 4.31611 4.42744 4.49841 4.64525 4.68694 4.78621 5.00559 5.07705 5.55881 6.20435 6.23032 6.56182 6.81408 7.31855 7.97199 8.21744 9.27514 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.007859 B = 0.006495 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3561.726583 B = 4309.737055 C = 7005.508959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.065 4.065 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.298 1.298 6 H -0.301 1.301 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.720 5.720 10 C 0.177 3.823 11 H 0.091 0.909 12 C 0.067 3.933 13 N -0.611 5.611 14 C 0.618 3.382 15 O -0.566 6.566 16 C -0.318 4.318 17 C 0.110 3.890 18 N -0.504 5.504 19 C 0.016 3.984 20 S 0.241 5.759 21 C 0.122 3.878 22 C -0.159 4.159 23 H 0.119 0.881 24 C 0.475 3.525 25 F -0.174 7.174 26 F -0.184 7.184 27 F -0.180 7.180 28 H 0.249 0.751 29 H 0.374 0.626 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.186 0.814 33 H 0.240 0.760 34 H 0.096 0.904 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.169 -10.923 -4.468 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.258 4.258 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.226 1.226 6 H -0.229 1.229 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.359 5.359 10 C 0.066 3.934 11 H 0.108 0.892 12 C -0.059 4.059 13 N -0.342 5.342 14 C 0.407 3.593 15 O -0.448 6.448 16 C -0.443 4.443 17 C -0.049 4.049 18 N -0.218 5.218 19 C -0.277 4.277 20 S 0.498 5.502 21 C 0.000 4.000 22 C -0.181 4.181 23 H 0.138 0.862 24 C 0.420 3.580 25 F -0.156 7.156 26 F -0.166 7.166 27 F -0.162 7.162 28 H 0.058 0.942 29 H 0.206 0.794 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.203 0.797 33 H 0.256 0.744 34 H 0.115 0.885 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.487 -10.786 -4.478 15.047 hybrid contribution -1.231 0.734 0.159 1.442 sum 8.256 -10.052 -4.319 13.706 Atomic orbital electron populations 1.69825 1.06750 1.25930 1.58996 1.25486 0.96077 1.00927 1.03343 0.85220 0.78949 0.80292 0.76195 1.18037 1.22569 1.22905 1.19648 0.91827 0.84187 1.41278 0.89185 1.42572 1.05345 1.00216 1.87768 1.21255 0.94821 0.84291 0.93070 0.89151 1.23944 0.89835 0.93133 0.99035 1.48612 1.35669 1.38892 1.11069 1.16452 0.81303 0.80644 0.80891 1.90791 1.27778 1.41789 1.84415 1.25621 1.05094 1.12828 1.00743 1.22298 1.00565 0.95272 0.86803 1.66372 1.09562 1.11214 1.34678 1.29753 0.96583 1.01531 0.99810 1.84241 1.18606 1.38098 1.09276 1.22281 1.05010 0.92612 0.80131 1.23731 1.02522 0.98613 0.93202 0.86246 1.19994 0.77494 0.76203 0.84311 1.93176 1.43478 1.88540 1.90360 1.93222 1.95519 1.63905 1.63934 1.93191 1.75116 1.58734 1.89139 0.94208 0.79368 0.87012 0.89512 0.79739 0.74430 0.88518 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.38 13.06 21.65 0.28 -55.09 16 2 C -0.07 -3.41 5.50 84.86 0.47 -2.95 16 3 Si 0.96 42.39 29.55 68.60 2.03 44.42 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.24 -11.40 9.96 84.03 0.84 -10.57 16 8 H 0.09 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -31.01 5.13 -318.00 -1.63 -32.64 16 10 C 0.18 5.61 3.02 46.04 0.14 5.75 16 11 H 0.09 2.75 7.35 -2.39 -0.02 2.74 16 12 C 0.07 1.83 5.76 86.67 0.50 2.33 16 13 N -0.61 -17.87 3.31 -811.85 -2.69 -20.56 16 14 C 0.62 20.62 7.87 86.45 0.68 21.30 16 15 O -0.57 -21.80 17.13 -4.30 -0.07 -21.87 16 16 C -0.32 -9.56 6.38 23.88 0.15 -9.40 16 17 C 0.11 3.22 11.10 84.23 0.93 4.15 16 18 N -0.50 -13.75 10.51 -202.57 -2.13 -15.87 16 19 C 0.02 0.34 12.22 130.60 1.60 1.93 16 20 S 0.24 5.62 19.05 -56.49 -1.08 4.54 16 21 C 0.12 3.08 6.34 86.54 0.55 3.62 16 22 C -0.16 -4.38 2.83 -9.88 -0.03 -4.41 16 23 H 0.12 3.64 7.67 -2.39 -0.02 3.62 16 24 C 0.47 12.09 2.51 71.98 0.18 12.27 16 25 F -0.17 -4.01 16.05 44.97 0.72 -3.28 16 26 F -0.18 -5.56 17.07 44.97 0.77 -4.80 16 27 F -0.18 -4.41 17.11 44.97 0.77 -3.64 16 28 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 29 H 0.37 18.22 7.56 -92.71 -0.70 17.52 16 30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 2.64 4.72 -16.28 -0.08 2.57 16 32 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 33 H 0.24 2.93 8.06 -2.91 -0.02 2.90 16 34 H 0.10 2.51 7.84 -2.38 -0.02 2.49 16 35 H 0.11 2.20 7.33 -2.39 -0.02 2.18 16 Total: -1.00 -64.62 325.63 3.39 -61.23 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.41 Total: 23.53 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 6.01 Total: 24.04 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -6.17 Total: -124.17 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.07 Total: -21.87 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 2.26 Total: -11.72 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.08 Total: 4.54 kcal Total: -64.62 3.39 -61.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099221136.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.739 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds