Wall clock time and date at job start Tue Mar 31 2020 18:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48496 * 109.46804 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47079 * 299.99673 * 3 2 1 6 6 H 1.48499 * 109.47092 * 59.99709 * 3 2 1 7 7 C 1.38806 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99751 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00454 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00405 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.38629 * 35.77761 * 10 9 7 12 12 C 1.54389 * 110.33902 * 273.54957 * 10 9 7 13 13 N 1.48147 * 104.61370 * 264.98972 * 12 10 9 14 14 C 1.34783 * 127.83474 * 140.41777 * 13 12 10 15 15 O 1.21623 * 120.00030 * 180.02562 * 14 13 12 16 16 C 1.47273 * 119.99935 * 0.02653 * 14 13 12 17 17 C 1.35198 * 123.13897 * 179.97438 * 16 14 13 18 18 S 1.70948 * 108.82605 * 180.02562 * 17 16 14 19 19 C 1.70772 * 91.12550 * 0.02562 * 18 17 16 20 20 N 1.28639 * 110.56515 * 0.02562 * 19 18 17 21 21 C 1.48139 * 104.32566 * 320.68053 * 13 12 10 22 22 C 1.53982 * 104.82191 * 39.27417 * 21 13 12 23 23 H 1.09004 * 110.24988 * 95.27532 * 22 21 13 24 24 C 1.52992 * 110.49168 * 217.46653 * 22 21 13 25 25 F 1.39900 * 109.47663 * 175.66860 * 24 22 21 26 26 F 1.39899 * 109.47381 * 295.67165 * 24 22 21 27 27 F 1.39900 * 109.47048 * 55.66651 * 24 22 21 28 28 H 0.97007 * 120.00119 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99855 * 0.02562 * 9 7 2 30 30 H 1.09005 * 110.40714 * 146.21311 * 12 10 9 31 31 H 1.08992 * 110.50812 * 23.82820 * 12 10 9 32 32 H 1.07999 * 125.59256 * 359.97438 * 17 16 14 33 33 H 1.07999 * 124.71511 * 179.97438 * 19 18 17 34 34 H 1.08999 * 110.40555 * 158.11182 * 21 13 12 35 35 H 1.09002 * 110.40775 * 280.53293 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9657 -3.5712 0.5979 12 6 2.4039 -4.0768 -1.4443 13 7 1.3096 -4.9941 -1.8391 14 6 0.6915 -5.0777 -3.0339 15 8 -0.1977 -5.8901 -3.2031 16 6 1.0928 -4.1854 -4.1347 17 6 0.5170 -4.2150 -5.3575 18 16 1.2591 -3.0336 -6.3455 19 6 2.2951 -2.5691 -5.0699 20 7 2.0610 -3.2726 -4.0186 21 6 1.0444 -5.7940 -0.6208 22 6 1.1645 -4.7920 0.5422 23 1 0.1812 -4.4052 0.8100 24 6 1.8225 -5.4545 1.7542 25 9 2.0108 -4.5021 2.7614 26 9 0.9981 -6.4797 2.2301 27 9 3.0604 -5.9877 1.3792 28 1 -0.4851 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 3.3623 -4.5953 -1.4703 31 1 2.4255 -3.2065 -2.1001 32 1 -0.2804 -4.8772 -5.6609 33 1 3.0433 -1.7932 -5.1367 34 1 0.0403 -6.2167 -0.6548 35 1 1.7872 -6.5848 -0.5162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099224320.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:25 Heat of formation + Delta-G solvation = -129.686200 kcal Electronic energy + Delta-G solvation = -27543.508696 eV Core-core repulsion = 23060.661288 eV Total energy + Delta-G solvation = -4482.847408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.14129 -48.61017 -48.59261 -41.66441 -40.06686 -38.81926 -35.82177 -33.58699 -32.31514 -31.57530 -29.12391 -27.92729 -26.09663 -25.94218 -24.11718 -22.68712 -21.73218 -20.47469 -19.84440 -19.56006 -19.34693 -18.99060 -18.23469 -17.55865 -17.14169 -16.70219 -16.58332 -15.90628 -15.73729 -15.52828 -15.40357 -15.20178 -15.11816 -15.01659 -14.86769 -14.73712 -14.61389 -14.34544 -14.28897 -13.58785 -13.38445 -13.15431 -12.94181 -12.79181 -12.64060 -12.48297 -12.25883 -12.02410 -11.74562 -11.37993 -11.08241 -10.70082 -10.51700 -10.06913 -9.79559 -9.01758 -7.92359 -5.22518 -0.44891 0.36731 0.64468 0.94971 1.49531 1.51243 1.57194 1.60745 1.95412 2.27221 2.55119 2.74454 2.81466 2.96776 3.14056 3.39660 3.58948 3.68948 3.90386 3.93069 4.00682 4.16560 4.23273 4.35268 4.47213 4.52077 4.68577 4.77688 4.87327 5.06365 5.50773 5.59028 6.25527 6.33000 6.48029 6.97277 7.34026 8.00278 8.26089 9.30643 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.006072 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.251793 B = 4610.085673 C = 7401.880139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.300 1.300 7 C -0.232 4.232 8 H 0.083 0.917 9 N -0.719 5.719 10 C 0.174 3.826 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.597 5.597 14 C 0.608 3.392 15 O -0.575 6.575 16 C -0.018 4.018 17 C -0.237 4.237 18 S 0.299 5.701 19 C -0.013 4.013 20 N -0.460 5.460 21 C 0.119 3.881 22 C -0.157 4.157 23 H 0.119 0.881 24 C 0.475 3.525 25 F -0.184 7.184 26 F -0.180 7.180 27 F -0.176 7.176 28 H 0.248 0.752 29 H 0.372 0.628 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.195 0.805 33 H 0.231 0.769 34 H 0.096 0.904 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -9.709 -9.965 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.228 1.228 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.358 5.358 10 C 0.063 3.937 11 H 0.095 0.905 12 C -0.053 4.053 13 N -0.327 5.327 14 C 0.396 3.604 15 O -0.456 6.456 16 C -0.154 4.154 17 C -0.380 4.380 18 S 0.555 5.445 19 C -0.311 4.311 20 N -0.174 5.174 21 C -0.004 4.004 22 C -0.179 4.179 23 H 0.137 0.863 24 C 0.420 3.580 25 F -0.165 7.165 26 F -0.161 7.161 27 F -0.157 7.157 28 H 0.057 0.943 29 H 0.205 0.795 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.212 0.788 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.901 -9.581 -10.628 15.478 hybrid contribution -0.473 0.388 1.390 1.519 sum 5.428 -9.193 -9.237 14.117 Atomic orbital electron populations 1.69833 1.06665 1.25790 1.59494 1.25473 0.96165 1.00845 1.03613 0.85149 0.78605 0.80146 0.76312 1.18580 1.22271 1.22752 1.19583 0.91554 0.84429 1.40750 0.89946 1.42493 1.05110 1.00169 1.88021 1.21239 0.93868 0.84282 0.94335 0.90466 1.23835 0.88367 0.95153 0.97901 1.48574 1.36645 1.37585 1.09931 1.17027 0.80427 0.81994 0.80970 1.90745 1.32341 1.39745 1.82745 1.20230 0.99329 1.00620 0.95174 1.26884 1.07004 1.06541 0.97578 1.82413 1.24881 1.23477 1.13703 1.29130 1.05532 1.04393 0.92061 1.66999 1.15895 1.05884 1.28647 1.22186 1.04339 0.92626 0.81262 1.23623 1.02920 0.98474 0.92870 0.86306 1.19993 0.76900 0.76499 0.84591 1.93216 1.95298 1.64526 1.63469 1.93186 1.72153 1.60951 1.89812 1.93170 1.44471 1.86914 1.91173 0.94264 0.79540 0.89984 0.86380 0.78819 0.75239 0.88597 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.46 13.06 21.65 0.28 -57.17 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 7 C -0.23 -12.02 9.97 84.03 0.84 -11.18 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.72 -33.99 5.14 -318.65 -1.64 -35.63 16 10 C 0.17 6.40 2.99 45.90 0.14 6.53 16 11 H 0.08 2.82 7.37 -2.39 -0.02 2.80 16 12 C 0.07 2.49 6.33 86.53 0.55 3.04 16 13 N -0.60 -20.48 3.32 -812.79 -2.70 -23.18 16 14 C 0.61 22.36 7.89 86.62 0.68 23.04 16 15 O -0.57 -23.04 16.98 -4.10 -0.07 -23.11 16 16 C -0.02 -0.60 6.64 40.56 0.27 -0.33 16 17 C -0.24 -5.94 10.62 67.12 0.71 -5.23 16 18 S 0.30 5.01 22.97 -56.49 -1.30 3.72 16 19 C -0.01 -0.28 12.17 130.71 1.59 1.31 16 20 N -0.46 -14.24 7.32 -193.03 -1.41 -15.65 16 21 C 0.12 3.50 6.37 86.40 0.55 4.05 16 22 C -0.16 -4.96 2.82 -10.03 -0.03 -4.99 16 23 H 0.12 4.01 7.64 -2.39 -0.02 4.00 16 24 C 0.47 13.75 2.53 71.98 0.18 13.93 16 25 F -0.18 -6.10 16.93 44.97 0.76 -5.34 16 26 F -0.18 -4.89 17.17 44.97 0.77 -4.12 16 27 F -0.18 -4.75 16.05 44.97 0.72 -4.03 16 28 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 29 H 0.37 19.52 7.50 -92.71 -0.70 18.82 16 30 H 0.08 2.44 8.14 -2.38 -0.02 2.43 16 31 H 0.12 4.60 5.22 -2.39 -0.01 4.59 16 32 H 0.19 4.38 8.03 -2.91 -0.02 4.36 16 33 H 0.23 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.10 2.81 7.88 -2.39 -0.02 2.79 16 35 H 0.10 2.56 7.21 -2.39 -0.02 2.55 16 Total: -1.00 -68.21 326.82 3.88 -64.33 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.48 Total: 26.95 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 5.95 Total: 26.89 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -5.47 Total: -131.64 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.07 Total: -23.11 kcal Atomic # 9 Polarization: -15.75 SS G_CDS: 2.26 Total: -13.49 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.30 Total: 3.72 kcal Total: -68.21 3.88 -64.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099224320.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.361 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds