Wall clock time and date at job start Tue Mar 31 2020 18:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46935 * 299.99873 * 3 2 1 6 6 H 1.48501 * 109.47175 * 59.99578 * 3 2 1 7 7 C 1.38810 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99903 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00075 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.30182 * 32.83108 * 10 9 7 12 12 C 1.54389 * 110.43386 * 270.59248 * 10 9 7 13 13 N 1.48148 * 104.61687 * 264.95124 * 12 10 9 14 14 C 1.34774 * 127.83856 * 140.39741 * 13 12 10 15 15 O 1.21631 * 120.00208 * 176.30011 * 14 13 12 16 16 C 1.47106 * 119.99840 * 356.30078 * 14 13 12 17 17 C 1.38385 * 127.99497 * 186.41526 * 16 14 13 18 18 C 1.37577 * 111.25772 * 179.88467 * 17 16 14 19 19 N 1.29555 * 117.95384 * 0.43494 * 18 17 16 20 20 S 1.56304 * 110.37831 * 359.74965 * 19 18 17 21 21 C 1.48150 * 104.32310 * 320.41295 * 13 12 10 22 22 C 1.54289 * 110.34152 * 155.00095 * 10 9 7 23 23 H 1.08998 * 110.33984 * 0.11106 * 22 10 9 24 24 C 1.52993 * 110.34346 * 237.85192 * 22 10 9 25 25 F 1.39904 * 109.47017 * 303.00475 * 24 22 10 26 26 F 1.39894 * 109.47485 * 63.00888 * 24 22 10 27 27 F 1.39907 * 109.47096 * 183.01105 * 24 22 10 28 28 H 0.96995 * 120.00107 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99854 * 0.02562 * 9 7 2 30 30 H 1.08997 * 110.40681 * 23.73553 * 12 10 9 31 31 H 1.08997 * 110.40574 * 146.05235 * 12 10 9 32 32 H 1.07996 * 124.36865 * 0.03148 * 17 16 14 33 33 H 1.08003 * 121.02222 * 180.18688 * 18 17 16 34 34 H 1.08994 * 110.40640 * 280.80003 * 21 13 12 35 35 H 1.09004 * 110.40119 * 158.36976 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9911 -3.5548 0.5548 12 6 2.3406 -4.1161 -1.4461 13 7 1.2311 -5.0439 -1.7672 14 6 0.5609 -5.1600 -2.9307 15 8 -0.2873 -6.0220 -3.0605 16 6 0.8554 -4.2442 -4.0436 17 6 0.1936 -4.1340 -5.2540 18 6 0.7581 -3.1594 -6.0441 19 7 1.7825 -2.5176 -5.5781 20 16 2.1431 -3.0334 -4.1474 21 6 1.0252 -5.8148 -0.5189 22 6 1.1908 -4.7768 0.6119 23 1 0.2191 -4.3834 0.9104 24 6 1.9025 -5.4059 1.8113 25 9 3.1533 -5.8882 1.4110 26 9 2.0724 -4.4421 2.8109 27 9 1.1325 -6.4629 2.3087 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.3310 -3.2630 -2.1245 31 1 3.2986 -4.6332 -1.5005 32 1 -0.6576 -4.7338 -5.5402 33 1 0.3619 -2.9390 -7.0244 34 1 1.7768 -6.5990 -0.4282 35 1 0.0231 -6.2433 -0.4978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099260089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:27 Heat of formation + Delta-G solvation = -114.399852 kcal Electronic energy + Delta-G solvation = -27475.439148 eV Core-core repulsion = 22993.254605 eV Total energy + Delta-G solvation = -4482.184542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.97001 -47.48122 -47.38148 -40.01963 -39.01122 -37.53628 -34.19688 -32.43941 -31.34768 -30.57686 -27.83788 -26.82167 -25.04995 -24.30011 -22.59924 -21.49462 -20.50979 -19.28179 -18.60025 -18.38399 -18.08035 -17.65937 -16.80917 -16.53261 -16.07246 -15.44357 -14.98813 -14.68396 -14.41334 -14.32286 -14.21517 -13.88392 -13.80498 -13.69775 -13.56226 -13.47501 -13.39081 -13.24970 -13.17714 -12.34733 -12.17100 -11.81855 -11.57900 -11.20831 -11.01400 -10.98249 -10.94879 -10.26253 -10.20245 -10.01867 -9.93509 -9.62221 -9.29852 -8.74078 -8.67299 -7.27209 -5.98367 -3.31690 0.41423 1.41848 2.00288 2.31107 2.64206 3.00839 3.15900 3.32393 3.38646 3.41050 3.89470 3.97859 4.13058 4.42459 4.48606 4.75199 4.86969 5.05569 5.12678 5.15832 5.20165 5.32554 5.44753 5.57801 5.65034 5.77634 5.87443 5.89612 5.96974 6.03619 6.33999 6.61096 7.44898 7.51501 8.06726 8.15871 9.29564 9.76577 10.11791 11.22715 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.007967 B = 0.006682 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.434384 B = 4189.090987 C = 6947.584982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.000 4.000 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.077 0.923 9 N -0.708 5.708 10 C 0.181 3.819 11 H 0.084 0.916 12 C 0.064 3.936 13 N -0.608 5.608 14 C 0.624 3.376 15 O -0.534 6.534 16 C -0.271 4.271 17 C -0.114 4.114 18 C 0.051 3.949 19 N -0.541 5.541 20 S 0.469 5.531 21 C 0.122 3.878 22 C -0.168 4.168 23 H 0.132 0.868 24 C 0.465 3.535 25 F -0.183 7.183 26 F -0.172 7.172 27 F -0.186 7.186 28 H 0.258 0.742 29 H 0.388 0.612 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.084 0.916 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -11.384 -3.974 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.198 4.198 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.067 3.933 11 H 0.102 0.898 12 C -0.065 4.065 13 N -0.341 5.341 14 C 0.412 3.588 15 O -0.412 6.412 16 C -0.405 4.405 17 C -0.150 4.150 18 C -0.140 4.140 19 N -0.371 5.371 20 S 0.625 5.375 21 C -0.001 4.001 22 C -0.189 4.189 23 H 0.150 0.850 24 C 0.411 3.589 25 F -0.165 7.165 26 F -0.153 7.153 27 F -0.168 7.168 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.189 0.811 33 H 0.194 0.806 34 H 0.102 0.898 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.325 -10.360 -3.737 12.233 hybrid contribution -1.393 0.102 -0.483 1.478 sum 3.932 -10.258 -4.220 11.768 Atomic orbital electron populations 1.69663 1.05216 1.26115 1.55905 1.24775 0.95478 0.97900 1.01648 0.86153 0.79033 0.83834 0.77360 1.20162 1.21674 1.21609 1.19240 0.91223 0.83402 1.44848 0.90473 1.42452 1.05844 0.98967 1.87486 1.21004 0.94894 0.85628 0.91757 0.89800 1.23975 0.88846 0.92598 1.01032 1.48568 1.35922 1.38716 1.10934 1.16212 0.80316 0.82480 0.79813 1.90799 1.33439 1.35402 1.81512 1.26647 1.07117 1.06712 1.00035 1.22016 1.01829 0.99351 0.91831 1.22132 0.93940 0.95003 1.02937 1.72080 1.20427 1.29942 1.14614 1.82254 1.26482 1.21083 1.07661 1.22144 1.04036 0.92683 0.81266 1.23919 1.03441 0.98988 0.92570 0.85026 1.20239 0.77323 0.76329 0.85057 1.93160 1.43949 1.88782 1.90566 1.93240 1.95467 1.63131 1.63468 1.93177 1.75289 1.59076 1.89248 0.93185 0.77692 0.89114 0.90216 0.81125 0.80647 0.89825 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.79 13.06 55.49 0.72 -25.06 16 2 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 3 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.26 -6.25 9.96 -15.06 -0.15 -6.40 16 8 H 0.08 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.71 -15.19 5.12 -52.07 -0.27 -15.46 16 10 C 0.18 2.97 3.01 -66.53 -0.20 2.77 16 11 H 0.08 1.37 7.33 -51.93 -0.38 0.98 16 12 C 0.06 0.94 6.22 -2.41 -0.01 0.93 16 13 N -0.61 -9.15 3.32 -170.69 -0.57 -9.72 16 14 C 0.62 10.35 7.89 -12.66 -0.10 10.25 16 15 O -0.53 -9.93 17.26 5.25 0.09 -9.84 16 16 C -0.27 -4.19 6.65 -35.93 -0.24 -4.43 16 17 C -0.11 -1.53 10.40 -39.77 -0.41 -1.94 16 18 C 0.05 0.66 11.14 -18.75 -0.21 0.45 16 19 N -0.54 -8.33 11.29 21.62 0.24 -8.08 16 20 S 0.47 7.05 19.45 -107.50 -2.09 4.96 16 21 C 0.12 1.60 6.32 -2.41 -0.02 1.58 16 22 C -0.17 -2.36 2.84 -89.22 -0.25 -2.62 16 23 H 0.13 1.95 7.67 -51.93 -0.40 1.55 16 24 C 0.47 6.28 2.51 37.15 0.09 6.37 16 25 F -0.18 -2.35 16.04 2.25 0.04 -2.31 16 26 F -0.17 -2.68 17.07 2.25 0.04 -2.64 16 27 F -0.19 -2.42 17.11 2.25 0.04 -2.38 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 9.14 7.56 -40.82 -0.31 8.84 16 30 H 0.09 1.47 4.09 -26.63 -0.11 1.36 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.08 0.95 7.32 -51.93 -0.38 0.57 16 35 H 0.10 1.27 7.91 -51.93 -0.41 0.86 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -29.61 325.31 -6.27 -35.88 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -2.80 Total: 7.02 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -1.60 Total: 6.86 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.14 Total: -58.32 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -2.09 Total: 4.96 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.61 -6.27 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099260089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.522 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds