Wall clock time and date at job start Tue Mar 31 2020 18:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46935 * 299.99873 * 3 2 1 6 6 H 1.48501 * 109.47175 * 59.99578 * 3 2 1 7 7 C 1.38810 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99903 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00075 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.30182 * 32.83108 * 10 9 7 12 12 C 1.54389 * 110.43386 * 270.59248 * 10 9 7 13 13 N 1.48148 * 104.61687 * 264.95124 * 12 10 9 14 14 C 1.34774 * 127.83856 * 140.39741 * 13 12 10 15 15 O 1.21631 * 120.00208 * 176.30011 * 14 13 12 16 16 C 1.47106 * 119.99840 * 356.30078 * 14 13 12 17 17 C 1.38385 * 127.99497 * 186.41526 * 16 14 13 18 18 C 1.37577 * 111.25772 * 179.88467 * 17 16 14 19 19 N 1.29555 * 117.95384 * 0.43494 * 18 17 16 20 20 S 1.56304 * 110.37831 * 359.74965 * 19 18 17 21 21 C 1.48150 * 104.32310 * 320.41295 * 13 12 10 22 22 C 1.54289 * 110.34152 * 155.00095 * 10 9 7 23 23 H 1.08998 * 110.33984 * 0.11106 * 22 10 9 24 24 C 1.52993 * 110.34346 * 237.85192 * 22 10 9 25 25 F 1.39904 * 109.47017 * 303.00475 * 24 22 10 26 26 F 1.39894 * 109.47485 * 63.00888 * 24 22 10 27 27 F 1.39907 * 109.47096 * 183.01105 * 24 22 10 28 28 H 0.96995 * 120.00107 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99854 * 0.02562 * 9 7 2 30 30 H 1.08997 * 110.40681 * 23.73553 * 12 10 9 31 31 H 1.08997 * 110.40574 * 146.05235 * 12 10 9 32 32 H 1.07996 * 124.36865 * 0.03148 * 17 16 14 33 33 H 1.08003 * 121.02222 * 180.18688 * 18 17 16 34 34 H 1.08994 * 110.40640 * 280.80003 * 21 13 12 35 35 H 1.09004 * 110.40119 * 158.36976 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9911 -3.5548 0.5548 12 6 2.3406 -4.1161 -1.4461 13 7 1.2311 -5.0439 -1.7672 14 6 0.5609 -5.1600 -2.9307 15 8 -0.2873 -6.0220 -3.0605 16 6 0.8554 -4.2442 -4.0436 17 6 0.1936 -4.1340 -5.2540 18 6 0.7581 -3.1594 -6.0441 19 7 1.7825 -2.5176 -5.5781 20 16 2.1431 -3.0334 -4.1474 21 6 1.0252 -5.8148 -0.5189 22 6 1.1908 -4.7768 0.6119 23 1 0.2191 -4.3834 0.9104 24 6 1.9025 -5.4059 1.8113 25 9 3.1533 -5.8882 1.4110 26 9 2.0724 -4.4421 2.8109 27 9 1.1325 -6.4629 2.3087 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.3310 -3.2630 -2.1245 31 1 3.2986 -4.6332 -1.5005 32 1 -0.6576 -4.7338 -5.5402 33 1 0.3619 -2.9390 -7.0244 34 1 1.7768 -6.5990 -0.4282 35 1 0.0231 -6.2433 -0.4978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099260089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:26 Heat of formation + Delta-G solvation = -133.550592 kcal Electronic energy + Delta-G solvation = -27476.269586 eV Core-core repulsion = 22993.254605 eV Total energy + Delta-G solvation = -4483.014981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.08633 -48.55815 -48.53916 -41.25312 -40.13101 -38.84098 -35.85627 -33.79245 -32.74242 -31.95265 -29.26491 -27.96564 -26.25078 -25.88752 -23.93340 -22.67150 -21.76492 -20.43632 -19.87331 -19.53278 -19.30874 -19.02560 -18.22018 -17.66504 -17.37102 -16.66736 -16.58033 -15.81861 -15.62691 -15.49359 -15.40305 -15.25726 -15.18520 -14.96564 -14.79063 -14.70109 -14.62064 -14.48337 -14.28668 -13.65863 -13.40724 -13.23545 -12.95173 -12.73258 -12.59060 -12.34890 -12.23685 -12.02315 -11.77712 -11.40956 -11.33002 -11.03793 -10.78593 -10.02539 -9.78055 -9.06525 -7.94786 -5.25019 -0.72582 0.28629 0.89593 1.23499 1.47949 1.49063 1.51906 1.59228 1.85631 1.95669 2.53820 2.77197 2.81529 2.99183 3.32115 3.37227 3.65311 3.72121 3.83529 3.98109 4.03041 4.10429 4.18338 4.45047 4.51597 4.59824 4.67203 4.76009 4.81247 4.91923 5.08183 5.55252 5.57445 6.21462 6.24064 6.81736 7.33434 7.98711 8.22937 9.27655 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.007967 B = 0.006682 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.434384 B = 4189.090987 C = 6947.584982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.063 4.063 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.301 1.301 6 H -0.299 1.299 7 C -0.235 4.235 8 H 0.089 0.911 9 N -0.719 5.719 10 C 0.175 3.825 11 H 0.092 0.908 12 C 0.068 3.932 13 N -0.608 5.608 14 C 0.621 3.379 15 O -0.560 6.560 16 C -0.293 4.293 17 C -0.105 4.105 18 C 0.059 3.941 19 N -0.564 5.564 20 S 0.452 5.548 21 C 0.123 3.877 22 C -0.159 4.159 23 H 0.123 0.877 24 C 0.474 3.526 25 F -0.175 7.175 26 F -0.185 7.185 27 F -0.180 7.180 28 H 0.249 0.751 29 H 0.375 0.625 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.192 0.808 33 H 0.214 0.786 34 H 0.110 0.890 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -12.620 -4.640 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.229 1.229 6 H -0.227 1.227 7 C -0.366 4.366 8 H 0.107 0.893 9 N -0.358 5.358 10 C 0.064 3.936 11 H 0.109 0.891 12 C -0.059 4.059 13 N -0.340 5.340 14 C 0.410 3.590 15 O -0.440 6.440 16 C -0.426 4.426 17 C -0.142 4.142 18 C -0.133 4.133 19 N -0.393 5.393 20 S 0.610 5.390 21 C 0.001 3.999 22 C -0.180 4.180 23 H 0.141 0.859 24 C 0.420 3.580 25 F -0.156 7.156 26 F -0.166 7.166 27 F -0.162 7.162 28 H 0.058 0.942 29 H 0.208 0.792 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.209 0.791 33 H 0.230 0.770 34 H 0.127 0.873 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.544 -11.636 -4.381 14.050 hybrid contribution -1.728 0.369 -0.311 1.794 sum 4.816 -11.266 -4.692 13.120 Atomic orbital electron populations 1.69798 1.06544 1.25824 1.59121 1.25403 0.96046 1.00634 1.03511 0.85316 0.79037 0.80772 0.76158 1.18223 1.22891 1.22673 1.19622 0.91800 0.84220 1.41005 0.89312 1.42553 1.05379 1.00102 1.87779 1.21207 0.94980 0.84375 0.93066 0.89075 1.23902 0.90232 0.92846 0.98969 1.48607 1.35660 1.38661 1.11111 1.16381 0.79963 0.82334 0.80353 1.90777 1.34570 1.36565 1.82134 1.26730 1.08073 1.07172 1.00643 1.22390 1.01788 0.99034 0.90966 1.22689 0.92775 0.93757 1.04040 1.72166 1.21636 1.30744 1.14737 1.82173 1.26999 1.21614 1.08235 1.22294 1.05173 0.92570 0.79877 1.23741 1.02607 0.98522 0.93163 0.85929 1.20005 0.77499 0.76174 0.84357 1.93179 1.43406 1.88610 1.90417 1.93221 1.95551 1.63810 1.64018 1.93194 1.75197 1.58648 1.89127 0.94235 0.79209 0.90212 0.86664 0.79096 0.76995 0.87253 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.07 13.06 21.65 0.28 -54.79 16 2 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 3 Si 0.96 43.17 29.55 68.60 2.03 45.20 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.24 -11.29 9.96 84.03 0.84 -10.45 16 8 H 0.09 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -30.59 5.12 -318.65 -1.63 -32.22 16 10 C 0.18 5.48 3.01 45.90 0.14 5.62 16 11 H 0.09 2.75 7.33 -2.39 -0.02 2.74 16 12 C 0.07 1.87 6.22 86.53 0.54 2.41 16 13 N -0.61 -17.31 3.32 -812.18 -2.69 -20.00 16 14 C 0.62 19.91 7.89 86.57 0.68 20.59 16 15 O -0.56 -20.30 17.26 -4.13 -0.07 -20.37 16 16 C -0.29 -8.69 6.65 24.63 0.16 -8.53 16 17 C -0.11 -2.62 10.40 22.15 0.23 -2.39 16 18 C 0.06 1.39 11.14 84.87 0.95 2.34 16 19 N -0.56 -16.56 11.29 -85.50 -0.97 -17.53 16 20 S 0.45 13.21 19.45 -56.49 -1.10 12.12 16 21 C 0.12 2.97 6.32 86.53 0.55 3.52 16 22 C -0.16 -4.23 2.84 -9.89 -0.03 -4.26 16 23 H 0.12 3.56 7.67 -2.39 -0.02 3.54 16 24 C 0.47 11.82 2.51 71.98 0.18 12.00 16 25 F -0.17 -3.97 16.04 44.97 0.72 -3.25 16 26 F -0.18 -5.49 17.07 44.97 0.77 -4.73 16 27 F -0.18 -4.29 17.11 44.97 0.77 -3.52 16 28 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.38 17.89 7.56 -92.70 -0.70 17.19 16 30 H 0.08 2.48 4.09 -18.48 -0.08 2.41 16 31 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.11 2.12 7.32 -2.39 -0.02 2.10 16 35 H 0.10 2.42 7.91 -2.39 -0.02 2.40 16 Total: -1.00 -63.55 325.31 3.22 -60.32 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.41 Total: 20.76 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 4.70 Total: 18.01 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -5.01 Total: -124.53 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.07 Total: -20.37 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 2.26 Total: -11.50 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 13.21 SS G_CDS: -1.10 Total: 12.12 kcal Total: -63.55 3.22 -60.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099260089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.230 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds