Wall clock time and date at job start Tue Mar 31 2020 18:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47044 * 239.99918 * 3 2 1 5 5 H 1.48500 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46964 * 119.99784 * 3 2 1 7 7 C 1.38817 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99544 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99877 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.39044 * 35.77684 * 10 9 7 12 12 C 1.54387 * 110.34449 * 273.54680 * 10 9 7 13 13 N 1.48145 * 104.61458 * 264.99740 * 12 10 9 14 14 C 1.34777 * 127.83792 * 140.41761 * 13 12 10 15 15 O 1.21623 * 119.99973 * 180.02562 * 14 13 12 16 16 C 1.47255 * 119.99800 * 0.29416 * 14 13 12 17 17 N 1.30550 * 125.54480 * 359.42149 * 16 14 13 18 18 C 1.30705 * 115.90793 * 179.77814 * 17 16 14 19 19 C 1.34233 * 115.78278 * 0.52395 * 18 17 16 20 20 S 1.71068 * 109.08949 * 359.71764 * 19 18 17 21 21 C 1.48140 * 104.32326 * 320.67085 * 13 12 10 22 22 C 1.53988 * 104.82024 * 39.28170 * 21 13 12 23 23 H 1.08997 * 110.25368 * 95.27346 * 22 21 13 24 24 C 1.52994 * 110.48916 * 217.46873 * 22 21 13 25 25 F 1.39903 * 109.47421 * 175.66861 * 24 22 21 26 26 F 1.39904 * 109.46749 * 295.66554 * 24 22 21 27 27 F 1.39903 * 109.47391 * 55.66213 * 24 22 21 28 28 H 0.97005 * 120.00165 * 0.02562 * 1 2 3 29 29 H 0.96991 * 119.99957 * 359.97438 * 9 7 2 30 30 H 1.08998 * 110.40905 * 146.21217 * 12 10 9 31 31 H 1.09000 * 110.50674 * 23.82816 * 12 10 9 32 32 H 1.08002 * 122.11263 * 180.26225 * 18 17 16 33 33 H 1.08005 * 125.45375 * 179.72607 * 19 18 17 34 34 H 1.09007 * 110.40813 * 158.11519 * 21 13 12 35 35 H 1.09005 * 110.41115 * 280.54140 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9656 -3.5713 0.5979 12 6 2.4038 -4.0769 -1.4443 13 7 1.3094 -4.9941 -1.8390 14 6 0.6914 -5.0778 -3.0338 15 8 -0.1978 -5.8901 -3.2029 16 6 1.0968 -4.1897 -4.1362 17 7 2.0298 -3.2788 -4.0730 18 6 2.2386 -2.5981 -5.1692 19 6 1.4577 -2.9184 -6.2130 20 16 0.3967 -4.1787 -5.7520 21 6 1.0443 -5.7940 -0.6207 22 6 1.1644 -4.7920 0.5423 23 1 0.1812 -4.4052 0.8102 24 6 1.8225 -5.4545 1.7542 25 9 2.0108 -4.5020 2.7615 26 9 0.9980 -6.4797 2.2302 27 9 3.0604 -5.9877 1.3793 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 3.3622 -4.5954 -1.4702 31 1 2.4255 -3.2066 -2.1001 32 1 2.9889 -1.8237 -5.2300 33 1 1.4937 -2.4548 -7.1878 34 1 0.0401 -6.2168 -0.6547 35 1 1.7871 -6.5849 -0.5160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099326779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:05 Heat of formation + Delta-G solvation = -106.256417 kcal Electronic energy + Delta-G solvation = -27465.109638 eV Core-core repulsion = 22983.278221 eV Total energy + Delta-G solvation = -4481.831416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90463 -47.41570 -47.31604 -40.23346 -39.08877 -37.57088 -34.06640 -32.24779 -30.83647 -30.16394 -27.59497 -26.80536 -25.15589 -24.17237 -22.49567 -21.31078 -20.39252 -19.53955 -18.31420 -18.21906 -17.98754 -17.59750 -16.71931 -16.57640 -15.79604 -15.47130 -14.88341 -14.87054 -14.34051 -14.28809 -14.10642 -13.80699 -13.70340 -13.63570 -13.48479 -13.46193 -13.28416 -13.23471 -13.02918 -12.20971 -11.87462 -11.69543 -11.51609 -11.27282 -10.91921 -10.87197 -10.83144 -10.32907 -10.17923 -9.82560 -9.69782 -9.57396 -9.13870 -8.94718 -8.55428 -7.12331 -5.87014 -3.18291 0.26906 1.12038 1.68913 2.41237 2.81939 3.15902 3.31086 3.38538 3.43490 3.44050 3.95915 4.06749 4.17992 4.22300 4.52122 4.81861 4.91798 5.02695 5.08352 5.25197 5.34426 5.40197 5.54465 5.59234 5.68376 5.91484 6.00106 6.09865 6.16128 6.43677 6.86288 7.49842 7.58325 7.61427 8.11831 8.27983 9.40852 9.90171 10.25632 11.34609 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.007944 B = 0.006180 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.956528 B = 4529.792324 C = 7342.825337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.707 5.707 10 C 0.178 3.822 11 H 0.076 0.924 12 C 0.061 3.939 13 N -0.586 5.586 14 C 0.621 3.379 15 O -0.541 6.541 16 C -0.005 4.005 17 N -0.405 5.405 18 C 0.034 3.966 19 C -0.282 4.282 20 S 0.231 5.769 21 C 0.119 3.881 22 C -0.167 4.167 23 H 0.130 0.870 24 C 0.465 3.535 25 F -0.172 7.172 26 F -0.187 7.187 27 F -0.183 7.183 28 H 0.257 0.743 29 H 0.386 0.614 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.178 0.822 33 H 0.182 0.818 34 H 0.096 0.904 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.802 -10.627 -7.629 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.348 5.348 10 C 0.065 3.935 11 H 0.094 0.906 12 C -0.065 4.065 13 N -0.317 5.317 14 C 0.406 3.594 15 O -0.418 6.418 16 C -0.280 4.280 17 N -0.123 5.123 18 C -0.123 4.123 19 C -0.423 4.423 20 S 0.485 5.515 21 C -0.004 4.004 22 C -0.188 4.188 23 H 0.148 0.852 24 C 0.410 3.590 25 F -0.153 7.153 26 F -0.169 7.169 27 F -0.165 7.165 28 H 0.067 0.933 29 H 0.221 0.779 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.195 0.805 33 H 0.200 0.800 34 H 0.115 0.885 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.865 -11.414 -7.775 14.105 hybrid contribution 0.982 1.806 0.140 2.060 sum 3.847 -9.608 -7.635 12.862 Atomic orbital electron populations 1.69651 1.05168 1.26030 1.56612 1.24744 0.95468 0.97758 1.02197 0.86261 0.78558 0.83340 0.77954 1.21139 1.21733 1.21077 1.19134 0.91073 0.83549 1.43929 0.90820 1.42377 1.05661 0.99000 1.87748 1.21084 0.93942 0.85323 0.93125 0.90582 1.24094 0.87470 0.94982 0.99915 1.48421 1.36544 1.37460 1.09281 1.16192 0.81167 0.81823 0.80179 1.90834 1.30978 1.38076 1.81948 1.27505 1.00332 1.01891 0.98287 1.66890 1.14647 1.03983 1.26745 1.21832 1.02045 1.01677 0.86771 1.26862 1.03498 1.05739 1.06234 1.83883 1.33120 1.28645 1.05846 1.22122 1.03664 0.92654 0.82008 1.23815 1.03972 0.98979 0.92081 0.85245 1.20262 0.76735 0.76618 0.85354 1.93237 1.95214 1.63893 1.62987 1.93171 1.72299 1.61427 1.89966 1.93156 1.44947 1.87094 1.91286 0.93309 0.77897 0.91743 0.85097 0.80494 0.80038 0.88542 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.38 9.97 -15.06 -0.15 -6.53 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.39 5.14 -52.07 -0.27 -16.66 16 10 C 0.18 3.25 2.99 -66.53 -0.20 3.05 16 11 H 0.08 1.39 7.37 -51.93 -0.38 1.01 16 12 C 0.06 1.03 6.38 -2.41 -0.02 1.02 16 13 N -0.59 -9.75 3.32 -170.88 -0.57 -10.32 16 14 C 0.62 10.96 7.90 -12.60 -0.10 10.86 16 15 O -0.54 -10.25 17.21 5.26 0.09 -10.16 16 16 C -0.01 -0.09 7.36 -14.43 -0.11 -0.19 16 17 N -0.41 -6.60 7.58 -11.51 -0.09 -6.68 16 18 C 0.03 0.44 11.24 -19.44 -0.22 0.22 16 19 C -0.28 -3.08 11.09 29.32 0.33 -2.75 16 20 S 0.23 2.87 23.03 -107.50 -2.48 0.39 16 21 C 0.12 1.71 6.37 -2.62 -0.02 1.70 16 22 C -0.17 -2.58 2.82 -89.43 -0.25 -2.83 16 23 H 0.13 2.08 7.64 -51.93 -0.40 1.68 16 24 C 0.46 6.80 2.53 37.15 0.09 6.90 16 25 F -0.17 -2.87 16.93 2.25 0.04 -2.83 16 26 F -0.19 -2.60 17.17 2.25 0.04 -2.56 16 27 F -0.18 -2.57 16.05 2.25 0.04 -2.54 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.39 9.72 7.50 -40.82 -0.31 9.42 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.13 2.54 5.40 -51.93 -0.28 2.26 16 32 H 0.18 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.10 1.34 7.88 -51.93 -0.41 0.93 16 35 H 0.08 1.05 7.21 -51.93 -0.37 0.68 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -30.36 327.90 -6.25 -36.61 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -2.96 Total: 8.21 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -0.74 Total: 11.21 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.20 Total: -59.83 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.11 Total: -7.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.48 Total: 0.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.36 -6.25 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099326779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.650 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds