Wall clock time and date at job start Tue Mar 31 2020 18:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47044 * 239.99918 * 3 2 1 5 5 H 1.48500 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46964 * 119.99784 * 3 2 1 7 7 C 1.38817 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99544 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99877 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.39044 * 35.77684 * 10 9 7 12 12 C 1.54387 * 110.34449 * 273.54680 * 10 9 7 13 13 N 1.48145 * 104.61458 * 264.99740 * 12 10 9 14 14 C 1.34777 * 127.83792 * 140.41761 * 13 12 10 15 15 O 1.21623 * 119.99973 * 180.02562 * 14 13 12 16 16 C 1.47255 * 119.99800 * 0.29416 * 14 13 12 17 17 N 1.30550 * 125.54480 * 359.42149 * 16 14 13 18 18 C 1.30705 * 115.90793 * 179.77814 * 17 16 14 19 19 C 1.34233 * 115.78278 * 0.52395 * 18 17 16 20 20 S 1.71068 * 109.08949 * 359.71764 * 19 18 17 21 21 C 1.48140 * 104.32326 * 320.67085 * 13 12 10 22 22 C 1.53988 * 104.82024 * 39.28170 * 21 13 12 23 23 H 1.08997 * 110.25368 * 95.27346 * 22 21 13 24 24 C 1.52994 * 110.48916 * 217.46873 * 22 21 13 25 25 F 1.39903 * 109.47421 * 175.66861 * 24 22 21 26 26 F 1.39904 * 109.46749 * 295.66554 * 24 22 21 27 27 F 1.39903 * 109.47391 * 55.66213 * 24 22 21 28 28 H 0.97005 * 120.00165 * 0.02562 * 1 2 3 29 29 H 0.96991 * 119.99957 * 359.97438 * 9 7 2 30 30 H 1.08998 * 110.40905 * 146.21217 * 12 10 9 31 31 H 1.09000 * 110.50674 * 23.82816 * 12 10 9 32 32 H 1.08002 * 122.11263 * 180.26225 * 18 17 16 33 33 H 1.08005 * 125.45375 * 179.72607 * 19 18 17 34 34 H 1.09007 * 110.40813 * 158.11519 * 21 13 12 35 35 H 1.09005 * 110.41115 * 280.54140 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9656 -3.5713 0.5979 12 6 2.4038 -4.0769 -1.4443 13 7 1.3094 -4.9941 -1.8390 14 6 0.6914 -5.0778 -3.0338 15 8 -0.1978 -5.8901 -3.2029 16 6 1.0968 -4.1897 -4.1362 17 7 2.0298 -3.2788 -4.0730 18 6 2.2386 -2.5981 -5.1692 19 6 1.4577 -2.9184 -6.2130 20 16 0.3967 -4.1787 -5.7520 21 6 1.0443 -5.7940 -0.6207 22 6 1.1644 -4.7920 0.5423 23 1 0.1812 -4.4052 0.8102 24 6 1.8225 -5.4545 1.7542 25 9 2.0108 -4.5020 2.7615 26 9 0.9980 -6.4797 2.2302 27 9 3.0604 -5.9877 1.3793 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 3.3622 -4.5954 -1.4702 31 1 2.4255 -3.2066 -2.1001 32 1 2.9889 -1.8237 -5.2300 33 1 1.4937 -2.4548 -7.1878 34 1 0.0401 -6.2168 -0.6547 35 1 1.7871 -6.5849 -0.5160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099326779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:05 Heat of formation + Delta-G solvation = -125.987817 kcal Electronic energy + Delta-G solvation = -27465.965256 eV Core-core repulsion = 22983.278221 eV Total energy + Delta-G solvation = -4482.687034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.12050 -48.58844 -48.57403 -41.45557 -40.24144 -38.96233 -35.83196 -33.70212 -32.44581 -31.33108 -29.15179 -27.95829 -26.35518 -25.92189 -23.90730 -22.47004 -21.78818 -20.72299 -19.60668 -19.48687 -19.27559 -18.94353 -18.26419 -17.79702 -17.12719 -16.73867 -16.53264 -15.94473 -15.68918 -15.50825 -15.40086 -15.19000 -15.11718 -14.99812 -14.85830 -14.71798 -14.62952 -14.37855 -14.27863 -13.59717 -13.35367 -13.09807 -12.86074 -12.64038 -12.58353 -12.45968 -12.23070 -12.11890 -11.76667 -11.61525 -11.08474 -10.71658 -10.62683 -10.10385 -9.81499 -9.02704 -7.92862 -5.22791 -0.78894 0.09289 0.71451 1.28031 1.49876 1.51897 1.57084 1.58991 1.93433 2.12807 2.54983 2.74556 2.80361 2.97506 3.03789 3.38978 3.61140 3.68908 3.90963 3.92391 4.01765 4.22876 4.29031 4.39211 4.49133 4.51423 4.68833 4.78526 4.98671 5.05235 5.46261 5.56365 6.23385 6.26044 6.46513 6.86016 7.33898 8.00376 8.25610 9.29606 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.007944 B = 0.006180 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.956528 B = 4529.792324 C = 7342.825337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.719 5.719 10 C 0.174 3.826 11 H 0.079 0.921 12 C 0.072 3.928 13 N -0.590 5.590 14 C 0.616 3.384 15 O -0.564 6.564 16 C -0.058 4.058 17 N -0.427 5.427 18 C 0.005 3.995 19 C -0.251 4.251 20 S 0.270 5.730 21 C 0.120 3.880 22 C -0.158 4.158 23 H 0.121 0.879 24 C 0.475 3.525 25 F -0.184 7.184 26 F -0.179 7.179 27 F -0.176 7.176 28 H 0.249 0.751 29 H 0.373 0.627 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.196 0.804 33 H 0.224 0.776 34 H 0.101 0.899 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 -11.088 -8.956 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.100 0.900 9 N -0.358 5.358 10 C 0.063 3.937 11 H 0.097 0.903 12 C -0.053 4.053 13 N -0.321 5.321 14 C 0.402 3.598 15 O -0.444 6.444 16 C -0.330 4.330 17 N -0.145 5.145 18 C -0.151 4.151 19 C -0.392 4.392 20 S 0.523 5.477 21 C -0.003 4.003 22 C -0.179 4.179 23 H 0.139 0.861 24 C 0.420 3.580 25 F -0.166 7.166 26 F -0.160 7.160 27 F -0.157 7.157 28 H 0.058 0.942 29 H 0.206 0.794 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.213 0.787 33 H 0.241 0.759 34 H 0.120 0.880 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.138 -11.924 -9.084 15.551 hybrid contribution 0.632 1.882 0.442 2.033 sum 4.770 -10.043 -8.643 14.082 Atomic orbital electron populations 1.69808 1.06594 1.25953 1.59264 1.25462 0.96164 1.00813 1.03523 0.85308 0.77226 0.79537 0.78260 1.20198 1.22793 1.20484 1.19504 0.91540 0.84512 1.41134 0.90032 1.42474 1.05152 1.00131 1.88016 1.21230 0.94020 0.84313 0.94144 0.90315 1.23823 0.88604 0.94876 0.98047 1.48484 1.36358 1.37509 1.09739 1.16496 0.80775 0.81795 0.80731 1.90797 1.31911 1.39189 1.82515 1.27347 1.02528 1.03302 0.99854 1.66831 1.14988 1.04240 1.28483 1.22197 1.03552 1.02580 0.86805 1.27382 1.00879 1.03745 1.07151 1.83732 1.32318 1.28426 1.03189 1.22260 1.04838 0.92509 0.80650 1.23634 1.03003 0.98384 0.92908 0.86066 1.19987 0.76908 0.76500 0.84575 1.93218 1.95299 1.64551 1.63490 1.93190 1.72124 1.60918 1.89808 1.93173 1.44469 1.86906 1.91161 0.94230 0.79428 0.89407 0.87098 0.78747 0.75930 0.88046 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.32 13.06 21.65 0.28 -57.04 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 3 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -12.22 9.97 84.03 0.84 -11.38 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.72 -33.63 5.14 -318.64 -1.64 -35.27 16 10 C 0.17 6.26 2.99 45.90 0.14 6.39 16 11 H 0.08 2.81 7.37 -2.39 -0.02 2.79 16 12 C 0.07 2.40 6.38 86.53 0.55 2.95 16 13 N -0.59 -19.39 3.32 -812.80 -2.70 -22.09 16 14 C 0.62 21.73 7.90 86.61 0.68 22.41 16 15 O -0.56 -21.45 17.21 -4.10 -0.07 -21.52 16 16 C -0.06 -1.86 7.36 87.26 0.64 -1.21 16 17 N -0.43 -13.66 7.58 -190.32 -1.44 -15.10 16 18 C 0.00 0.12 11.24 83.95 0.94 1.07 16 19 C -0.25 -4.71 11.09 66.91 0.74 -3.97 16 20 S 0.27 6.23 23.03 -56.49 -1.30 4.93 16 21 C 0.12 3.33 6.37 86.40 0.55 3.88 16 22 C -0.16 -4.77 2.82 -10.02 -0.03 -4.80 16 23 H 0.12 3.92 7.64 -2.39 -0.02 3.90 16 24 C 0.48 13.24 2.53 71.98 0.18 13.42 16 25 F -0.18 -5.98 16.93 44.97 0.76 -5.22 16 26 F -0.18 -4.67 17.17 44.97 0.77 -3.90 16 27 F -0.18 -4.56 16.05 44.97 0.72 -3.83 16 28 H 0.25 14.55 8.31 -92.70 -0.77 13.77 16 29 H 0.37 19.29 7.50 -92.71 -0.70 18.60 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.11 4.31 5.40 -2.39 -0.01 4.29 16 32 H 0.20 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.22 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.10 2.74 7.88 -2.38 -0.02 2.72 16 35 H 0.11 2.46 7.21 -2.38 -0.02 2.45 16 Total: -1.00 -66.17 327.90 3.61 -62.57 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.48 Total: 24.31 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 5.71 Total: 25.54 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -5.50 Total: -129.50 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 9 Polarization: -15.21 SS G_CDS: 2.26 Total: -12.95 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.30 Total: 4.93 kcal Total: -66.17 3.61 -62.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099326779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.422 kcal (2) G-P(sol) polarization free energy of solvation -66.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds