Wall clock time and date at job start Tue Mar 31 2020 19:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38925 * 119.69774 * 2 1 4 4 C 1.37681 * 120.64268 * 179.72410 * 3 2 1 5 5 C 1.39231 * 119.80865 * 0.27841 * 4 3 2 6 6 N 1.37508 * 133.13157 * 180.02562 * 5 4 3 7 7 H 0.96993 * 125.60860 * 359.95864 * 6 5 4 8 8 C 1.38345 * 108.78888 * 180.02562 * 6 5 4 9 9 C 1.46872 * 125.46209 * 179.97438 * 8 6 5 10 10 O 1.21663 * 120.00314 * 180.02562 * 9 8 6 11 11 N 1.34780 * 119.99684 * 0.02562 * 9 8 6 12 12 C 1.46496 * 119.99924 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47472 * 179.97438 * 12 11 9 14 14 O 1.21300 * 119.99408 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00384 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00017 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99913 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99931 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00119 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00121 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47374 * 119.99593 * 20 18 16 23 23 H 1.48504 * 109.46934 * 239.99896 * 20 18 16 24 24 C 1.36029 * 109.08010 * 359.97438 * 8 6 5 25 25 Cl 1.73599 * 126.15114 * 180.02562 * 24 8 6 26 26 C 1.40825 * 119.42953 * 359.97438 * 5 4 3 27 27 C 1.36458 * 119.68945 * 180.30793 * 2 1 3 28 28 H 1.09001 * 109.47165 * 89.99604 * 1 2 3 29 29 H 1.08996 * 109.47638 * 209.99784 * 1 2 3 30 30 H 1.08998 * 109.46609 * 329.99733 * 1 2 3 31 31 H 1.08002 * 119.68189 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.09700 * 180.30156 * 4 3 2 33 33 H 0.97000 * 119.99847 * 359.97438 * 11 9 8 34 34 H 1.08994 * 109.47344 * 300.00034 * 12 11 9 35 35 H 1.09004 * 109.47382 * 59.99947 * 12 11 9 36 36 H 0.96995 * 120.00247 * 0.02562 * 15 13 12 37 37 H 0.96998 * 120.00132 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.08626 * 359.96944 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2068 0.0000 4 6 3.5719 1.2295 0.0057 5 6 4.2839 0.0330 0.0057 6 7 5.6270 -0.2618 0.0109 7 1 6.3476 0.3874 0.0153 8 6 5.7815 -1.6366 0.0073 9 6 7.0654 -2.3498 0.0104 10 8 7.0856 -3.5662 0.0063 11 7 8.2212 -1.6566 0.0178 12 6 9.5019 -2.3679 0.0204 13 6 10.6310 -1.3697 0.0283 14 8 10.3895 -0.1810 0.0310 15 7 11.9089 -1.7978 0.0323 16 6 12.9360 -0.8897 0.0389 17 1 12.7211 0.1686 0.0413 18 6 14.2536 -1.3310 0.0425 19 7 14.5151 -2.6189 0.0401 20 14 15.6530 -0.0938 0.0523 21 1 15.0965 1.2830 0.0543 22 1 16.4828 -0.2945 1.2674 23 1 16.4923 -0.2863 -1.1576 24 6 4.5536 -2.2220 0.0004 25 17 4.2325 -3.9280 -0.0056 26 6 3.5837 -1.1888 0.0003 27 6 2.1829 -1.1854 -0.0064 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6452 2.1362 0.0004 32 1 4.0980 2.1727 0.0106 33 1 8.2051 -0.6867 0.0208 34 1 9.5664 -2.9969 0.9081 35 1 9.5738 -2.9901 -0.8717 36 1 12.1020 -2.7483 0.0297 37 1 15.4349 -2.9270 0.0430 38 1 1.6392 -2.1186 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117321521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:05 Heat of formation + Delta-G solvation = -27.208595 kcal Electronic energy + Delta-G solvation = -24719.560001 eV Core-core repulsion = 20780.969390 eV Total energy + Delta-G solvation = -3938.590612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86914 -39.55774 -38.25360 -37.46389 -36.48044 -34.63083 -33.83894 -32.43298 -31.72997 -31.44923 -29.42066 -28.05580 -26.56760 -24.83567 -23.57415 -22.04409 -21.06758 -20.21574 -19.75190 -18.74859 -18.07767 -17.44002 -15.98978 -15.86747 -15.75142 -15.33293 -15.17773 -14.89489 -14.68461 -14.37887 -14.16427 -14.06255 -13.93662 -13.71055 -13.53178 -13.37302 -12.46678 -12.32820 -12.13890 -12.07542 -12.00676 -11.70611 -11.41957 -11.35313 -11.20149 -10.95858 -10.47026 -10.39549 -10.01058 -9.83884 -9.72766 -9.05709 -8.75007 -8.45242 -8.18632 -7.96299 -6.58916 -4.01358 0.44945 1.25466 1.79035 1.98513 2.78275 3.04593 3.05330 3.18310 3.19677 3.24806 3.51067 3.64203 4.04123 4.29614 4.53690 4.60336 4.74517 4.82445 4.94421 4.99725 5.09511 5.14446 5.25813 5.35431 5.39972 5.65379 5.71962 5.78203 5.83819 5.94678 5.99433 6.13132 6.17535 6.36969 6.41478 6.71218 7.01165 7.39068 7.52595 7.83217 8.12773 8.35822 8.96499 9.30186 9.77165 10.57723 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.002251 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.686962 B =12436.482321 C =13652.717114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.083 4.083 4 C -0.125 4.125 5 C 0.118 3.882 6 N -0.567 5.567 7 H 0.428 0.572 8 C 0.043 3.957 9 C 0.575 3.425 10 O -0.509 6.509 11 N -0.702 5.702 12 C 0.110 3.890 13 C 0.426 3.574 14 O -0.601 6.601 15 N -0.545 5.545 16 C -0.306 4.306 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.892 5.892 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.042 4.042 25 Cl -0.016 7.016 26 C -0.106 4.106 27 C -0.058 4.058 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.406 0.594 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.397 0.603 37 H 0.275 0.725 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.297 3.851 -0.098 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.115 4.115 3 C -0.103 4.103 4 C -0.146 4.146 5 C 0.008 3.992 6 N -0.173 5.173 7 H 0.268 0.732 8 C -0.069 4.069 9 C 0.359 3.641 10 O -0.384 6.384 11 N -0.356 5.356 12 C -0.018 4.018 13 C 0.211 3.789 14 O -0.488 6.488 15 N -0.179 5.179 16 C -0.436 4.436 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.532 5.532 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.078 4.078 25 Cl 0.013 6.987 26 C -0.111 4.111 27 C -0.077 4.077 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.243 0.757 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.231 0.769 37 H 0.085 0.915 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.044 3.541 -0.094 24.304 hybrid contribution 1.400 0.603 0.000 1.524 sum -22.644 4.144 -0.094 23.021 Atomic orbital electron populations 1.20734 0.90884 1.02721 1.02244 1.19386 0.96231 0.92612 1.03300 1.20802 0.92788 0.97753 0.98931 1.20101 0.93841 0.94892 1.05739 1.18207 0.82668 0.95122 1.03212 1.41950 1.06574 1.05613 1.63159 0.73220 1.19920 0.94374 0.82354 1.10281 1.16984 0.81894 0.86997 0.78213 1.90901 1.86419 1.11815 1.49313 1.45557 1.04861 1.11195 1.73975 1.21024 0.82240 0.94703 1.03786 1.19673 0.84104 0.89105 0.85992 1.90486 1.83578 1.16932 1.57811 1.41794 1.03900 1.10122 1.62132 1.19778 0.84196 0.91214 1.48382 0.87579 1.25353 0.98875 0.96844 0.96631 1.69620 1.21408 1.13196 1.48943 0.85744 0.80124 0.80238 0.77900 1.19127 1.20542 1.20547 1.19923 0.91461 0.86425 1.09967 1.98362 1.95262 1.08327 1.96738 1.17849 0.93589 0.90691 1.08923 1.20228 0.91048 0.98206 0.98186 0.91350 0.91589 0.91625 0.85296 0.85355 0.75669 0.89297 0.89307 0.76943 0.91522 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.99 36.01 0.36 -0.26 16 2 C -0.11 -0.96 5.84 -105.01 -0.61 -1.57 16 3 C -0.08 -0.65 9.66 -39.53 -0.38 -1.04 16 4 C -0.13 -1.11 10.08 -39.42 -0.40 -1.50 16 5 C 0.12 1.32 7.25 -83.97 -0.61 0.71 16 6 N -0.57 -6.43 6.08 -7.33 -0.04 -6.48 16 7 H 0.43 3.96 8.12 -40.82 -0.33 3.63 16 8 C 0.04 0.60 6.97 -82.23 -0.57 0.02 16 9 C 0.57 9.19 7.79 -12.77 -0.10 9.09 16 10 O -0.51 -9.34 15.39 5.22 0.08 -9.26 16 11 N -0.70 -11.21 5.52 -62.74 -0.35 -11.56 16 12 C 0.11 1.93 6.15 -5.20 -0.03 1.90 16 13 C 0.43 9.38 7.85 -10.99 -0.09 9.30 16 14 O -0.60 -14.71 15.24 5.54 0.08 -14.63 16 15 N -0.55 -13.12 5.29 -10.96 -0.06 -13.18 16 16 C -0.31 -8.13 9.68 -14.93 -0.14 -8.27 16 17 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.37 13.05 55.50 0.72 -22.64 16 20 Si 0.93 20.14 29.55 -169.99 -5.02 15.11 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 C -0.04 -0.58 6.72 -39.05 -0.26 -0.84 16 25 Cl -0.02 -0.22 27.67 -51.86 -1.44 -1.65 16 26 C -0.11 -1.28 6.16 -106.90 -0.66 -1.94 16 27 C -0.06 -0.58 9.68 -39.53 -0.38 -0.97 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.41 6.16 6.49 -40.82 -0.26 5.90 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.40 9.18 7.90 -40.82 -0.32 8.86 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -31.09 351.17 -8.51 -39.60 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -3.80 Total: 14.19 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -3.98 Total: 5.20 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.28 Total: -53.86 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.16 Total: -23.89 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.44 Total: -1.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.09 -8.51 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117321521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.387 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds